Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Forward (+)

48379707 .. 48380579

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGATAGGGAAGTCTCCAGTTATCAGCAGGAATTATCTTGATCTGTTATGGTTCCAAGATTCAGTTACAGAGAAGAAGATGAAGAACAGTGGAAATGGGAAGAGTCACAAAGGAAATGTGAGAGAGGATCAGGTGAAGAAGGACAGTAAATCAGGATCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACCTGGGCCGATGATCTGGGCTACTCTATAGCCGAGATGGGTTTTCAAAAGGTAGTCATCGATGATGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

7.92

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	6 cut(s)	138, 166, 181, 275, 288, 301
AcoI	YGGCCR	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	254, 293
AjnI	CCWGG	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	6 cut(s)	138, 166, 181, 275, 288, 301
AoxI	GGCC	2 cut(s)	190, 213
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	16, 148, 199
BalI	TGGCCA	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	300
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	56, 282
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	193, 210, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	193, 210, 276
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	192, 215
BshVI	ATCGAT	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	192, 215
Bsp143I	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	2 cut(s)	192, 215
BspDI	ATCGAT	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	56, 282
BspPI	GGATC	6 cut(s)	138, 166, 181, 275, 288, 301
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	193, 210, 276
BssMI	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
BssT1I	CCWWGG	2 cut(s)	193, 276
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	92, 149, 301
Bst6I	CTCTTC	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	193
BstKTI	GATC	7 cut(s)	46, 133, 161, 176, 223, 283, 309
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	280, 306
BstYI	RGATCY	2 cut(s)	280, 306
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	192, 215
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	2 cut(s)	166, 194
CviJI	RGCY	4 cut(s)	192, 215, 228, 239
CviKI_1	RGCY	4 cut(s)	192, 215, 228, 239
DpnI	GATC	7 cut(s)	45, 132, 160, 175, 222, 282, 308
DpnII	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	193, 276
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	2 cut(s)	193, 276
ErhI	CCWWGG	2 cut(s)	193, 276
FaeI	CATG	2 cut(s)	169, 197
FaiI	YATR	4 cut(s)	52, 167, 195, 236
FatI	CATG	2 cut(s)	165, 193
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	192, 215
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	169, 197
HinfI	GANTC	2 cut(s)	62, 106
HphI	GGTGA	3 cut(s)	16, 148, 199
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	41, 156, 304
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	92, 149, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	169, 197
Kzo9I	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
LpnPI	CCDG	7 cut(s)	16, 33, 119, 141, 196, 209, 223
LweI	GCATC	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	67, 107
MalI	GATC	7 cut(s)	45, 132, 160, 175, 222, 282, 308
MboI	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
MboII	GAAGA	6 cut(s)	88, 91, 97, 115, 151, 305
MflI	RGATCY	2 cut(s)	280, 306
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	121
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
NlaIII	CATG	2 cut(s)	169, 197
NlaIV	GGNNCC	2 cut(s)	56, 282
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	56, 282
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	280, 306
PsyI	GACNNNGTC	1 cut(s)	299
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	7 cut(s)	43, 130, 158, 173, 220, 280, 306
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	4 cut(s)	138, 190, 212, 261
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	193, 276
TaaI	ACNGT	3 cut(s)	92, 149, 301
TaqI	TCGA	2 cut(s)	267, 303
TasI	AATT	1 cut(s)	34
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	98, 182
TspRI	CASTG	1 cut(s)	97
Tth111I	GACNNNGTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.