Prupe.1G287500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009428
Physical Location & Seq
Forward (+)
28754288 .. 28757924
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G287500.1

Sequence Viewer

Length: 1056 bp
ATGGACTTGGAACCTGGCAGCAGAAACAGTAAGCATTCAGAAATAGTTGTTGATGGAAGTGGAGGCAGTAAGCACTCAGAAACATCAAAGGCTCCTGATGCGAGTGATAGAAATAGCCATTCAACAATACGTCCAGAGGCTGATGCTAATGAAGGTGATCTGCGTGTCCCGTCCAGAAAGCTAATCTCTTTGTCCTCTTTGTCTTCAGTGGCATCAGACTCGTCATTGGAAGATCTCTTCCAAGTGGACACAAATAGAATTTCCACTTCACCACATATTGCTTCCCTCCCTAAACATCATGACCACAGCTCTCTGGGCCCCGCATCAACATCCCGAGTTTCGGATGTTGGGCATGGTATGTCACCGACAGAATCCCCCACAGTCCAAATGATGGAACGGAGTGGAGGATATGATCCTTGCAGGATCCCGTCTTCTGTGTTTGCAAGAAGTAAATCCAACAAAGAAATGGAATGGAGTGTTGCTTCCAATGAGTCATTGTTTAGCATTCATTTAGGCAACAATAGCTTTTCCAGAGACCATATATTTTTGCTGGGTGATTTGACTAAGTCTGGGGAACTATATAAATCAGGCGAGTTGTTTGGGCTCAGTCCACACCCTCCTCCAATTCCTGAGCTAGAAATTGAAAGCAATGGGATTGAAGAGGTGAGGGAATCTGGAGCTGAAGGAATGGCAGATGAGACCGTCAAGGCCACTGCAAGAACAAATGCCGAAGATCATAGTGAGGGAAGAGTACCACCTCGAAATGTATCCTTCAAATCCCATAGCCTCTCCCGCCGTTCCGATGGGAGTGGAGCTAGCACACGCTCTTTTGCCTTCCCAATATTGACAGATGGGATGAAAAATTCTATGAAGGTTACACAGTATACCGAAGAGAAGTGTCTGGAGCCACCAGCAGCGGCCAAAGTATCGACTAAAAAAGTAACCAAATCAAAACCCACCTATTGGTGTCGTTGCTTTTCTTGGTGCAAGTGGGGTTGTTCTTGTCATCGTCACTGTTCTAGTCCTTCTTGTTCTTGTTGTGGTGGTTGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

37.94

Weight (kDa)

6.43

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 391, 963
AccI GTMKAC 1 cut(s) 884
AciI CCGC 3 cut(s) 321, 793, 917
AclWI GGATC 3 cut(s) 407, 418, 431
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 2 cut(s) 258, 862
AcuI CTGAAG 2 cut(s) 189, 702
AfaI GTAC 1 cut(s) 753
AfiI CCNNNNNNNGG 3 cut(s) 340, 391, 963
AgsI TTSAA 4 cut(s) 123, 644, 659, 775
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 6 cut(s) 181, 309, 525, 634, 680, 815
AluI AGCT 6 cut(s) 181, 309, 525, 634, 680, 815
Alw26I GTCTC 2 cut(s) 528, 692
AlwI GGATC 3 cut(s) 407, 418, 431
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 3 cut(s) 316, 708, 918
ApaI GGGCCC 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 18, 914
ApoI RAATTY 2 cut(s) 258, 862
AspS9I GGNCC 2 cut(s) 316, 317
AsuHPI GGTGA 5 cut(s) 167, 261, 354, 566, 676
AsuNHI GCTAGC 1 cut(s) 815
AvaI CYCGRG 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 320
BamHI GGATCC 1 cut(s) 423
BanII GRGCYC 2 cut(s) 320, 606
BbsI GAAGAC 2 cut(s) 195, 423
BbvI GCAGC 2 cut(s) 30, 926
BccI CCATC 4 cut(s) 47, 385, 797, 845
BceAI ACGGC 1 cut(s) 780
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 1 cut(s) 15
BciVI GTATCC 1 cut(s) 778
BcoDI GTCTC 2 cut(s) 528, 692
BfaI CTAG 3 cut(s) 635, 816, 1020
BfuI GTATCC 1 cut(s) 778
BglII AGATCT 1 cut(s) 232
BisI GCNGC 3 cut(s) 19, 915, 918
BlsI GCNGC 3 cut(s) 20, 916, 919
Bme1390I CCNGG 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 316, 317
BmiI GGNNCC 6 cut(s) 12, 93, 318, 319, 425, 906
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 4 cut(s) 88, 133, 221, 332
BmtI GCTAGC 1 cut(s) 819
BpiI GAAGAC 2 cut(s) 195, 423
BpmI CTGGAG 2 cut(s) 696, 923
Bpu10I CCTNAGC 1 cut(s) 630
BsaI GGTCTC 2 cut(s) 528, 692
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 391, 963
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 329, 349, 861
BseLI CCNNNNNNNGG 3 cut(s) 340, 391, 963
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 90, 619, 621
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 30, 926
BseYI CCCAGC 1 cut(s) 550
BshFI GGCC 3 cut(s) 318, 710, 920
BsiHKCI CYCGRG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 340, 391, 963
BsmAI GTCTC 2 cut(s) 528, 692
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 2 cut(s) 34, 504
BsnI GGCC 3 cut(s) 318, 710, 920
Bso31I GGTCTC 2 cut(s) 528, 692
BsoBI CYCGRG 1 cut(s) 333
Bsp120I GGGCCC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 320, 606
Bsp143I GATC 5 cut(s) 157, 232, 412, 423, 733
BspACI CCGC 3 cut(s) 321, 793, 917
BspANI GGCC 3 cut(s) 318, 710, 920
BspCNI CTCAG 3 cut(s) 89, 618, 622
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 6 cut(s) 12, 93, 318, 319, 425, 906
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 3 cut(s) 407, 418, 431
BspTNI GGTCTC 2 cut(s) 528, 692
BsrDI GCAATG 1 cut(s) 655
BssMI GATC 5 cut(s) 157, 232, 412, 423, 733
BssNAI GTATAC 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 885
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 5 cut(s) 29, 382, 703, 882, 1016
Bst6I CTCTTC 4 cut(s) 242, 654, 742, 885
BstC8I GCNNGC 1 cut(s) 817
BstDEI CTNAG 4 cut(s) 76, 564, 605, 630
BstF5I GGATG 3 cut(s) 329, 349, 861
BstKTI GATC 5 cut(s) 160, 235, 415, 426, 736
BstMAI GTCTC 2 cut(s) 528, 692
BstMBI GATC 5 cut(s) 157, 232, 412, 423, 733
BstMWI GCNNNNNNNGC 4 cut(s) 98, 315, 522, 792
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 30, 926
BstV2I GAAGAC 2 cut(s) 195, 423
BstX2I RGATCY 2 cut(s) 232, 423
BstYI RGATCY 2 cut(s) 232, 423
BstZ17I GTATAC 1 cut(s) 885
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 3 cut(s) 318, 710, 920
BtsCI GGATG 3 cut(s) 329, 349, 861
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 3 cut(s) 213, 711, 1012
Cac8I GCNNGC 1 cut(s) 817
CaiI CAGNNNCTG 1 cut(s) 140
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 316, 317
Csp6I GTAC 1 cut(s) 752
CviAII CATG 2 cut(s) 299, 353
CviQI GTAC 1 cut(s) 752
DdeI CTNAG 4 cut(s) 76, 564, 605, 630
DpnI GATC 5 cut(s) 159, 234, 414, 425, 735
DpnII GATC 5 cut(s) 157, 232, 412, 423, 733
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 4 cut(s) 242, 654, 742, 885
EarI CTCTTC 4 cut(s) 242, 654, 742, 885
Eco24I GRGCYC 2 cut(s) 320, 606
Eco31I GGTCTC 2 cut(s) 528, 692
Eco57I CTGAAG 2 cut(s) 189, 702
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 320, 606
FaeI CATG 2 cut(s) 302, 356
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 298, 352
FauI CCCGC 2 cut(s) 328, 800
FblI GTMKAC 1 cut(s) 884
Fnu4HI GCNGC 3 cut(s) 19, 915, 918
FokI GGATG 3 cut(s) 316, 356, 868
FriOI GRGCYC 2 cut(s) 320, 606
Fsp4HI GCNGC 3 cut(s) 19, 915, 918
FspBI CTAG 3 cut(s) 635, 816, 1020
GluI GCNGC 3 cut(s) 19, 915, 918
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 2 cut(s) 696, 923
HaeIII GGCC 3 cut(s) 318, 710, 920
Hin1II CATG 2 cut(s) 302, 356
HinfI GANTC 4 cut(s) 218, 371, 491, 671
HphI GGTGA 5 cut(s) 167, 261, 354, 566, 676
Hpy166II GTNNAC 3 cut(s) 247, 611, 885
Hpy188I TCNGA 5 cut(s) 40, 79, 217, 343, 802
Hpy188III TCNNGA 9 cut(s) 95, 134, 174, 299, 333, 531, 629, 675, 902
Hpy8I GTNNAC 3 cut(s) 247, 611, 885
HpyAV CCTTC 6 cut(s) 146, 677, 781, 844, 865, 1035
HpyCH4III ACNGT 5 cut(s) 29, 382, 703, 882, 1016
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 420, 443, 716, 987
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 315, 522, 792
HpyF3I CTNAG 4 cut(s) 76, 564, 605, 630
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 2 cut(s) 302, 356
Kzo9I GATC 5 cut(s) 157, 232, 412, 423, 733
LmnI GCTCC 4 cut(s) 97, 677, 812, 904
Lsp1109I GCAGC 2 cut(s) 30, 926
LweI GCATC 4 cut(s) 88, 133, 221, 332
MaeI CTAG 3 cut(s) 635, 816, 1020
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 4 cut(s) 360, 874, 940, 1010
MalI GATC 5 cut(s) 159, 234, 414, 425, 735
MboI GATC 5 cut(s) 157, 232, 412, 423, 733
MboII GAAGA 8 cut(s) 195, 229, 242, 423, 671, 743, 759, 902
MflI RGATCY 2 cut(s) 232, 423
MhlI GDGCHC 2 cut(s) 320, 606
MluCI AATT 4 cut(s) 258, 624, 639, 862
MlyI GAGTC 2 cut(s) 212, 500
MmeI TCCRAC 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 917
MspR9I CCNGG 1 cut(s) 15
Mva1269I GAATGC 2 cut(s) 34, 504
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 98, 315, 522, 792
NdeII GATC 5 cut(s) 157, 232, 412, 423, 733
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 2 cut(s) 302, 356
NlaIV GGNNCC 6 cut(s) 12, 93, 318, 319, 425, 906
NmuCI GTSAC 2 cut(s) 360, 1010
PagI TCATGA 1 cut(s) 298
PctI GAATGC 2 cut(s) 34, 504
PfeI GAWTC 2 cut(s) 371, 671
PflFI GACNNNGTC 1 cut(s) 565
PflMI CCANNNNNTGG 2 cut(s) 391, 963
PkrI GCNGC 3 cut(s) 20, 916, 919
PleI GAGTC 2 cut(s) 212, 499
PpsI GAGTC 2 cut(s) 212, 499
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 6 cut(s) 12, 93, 318, 319, 425, 906
PspOMI GGGCCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 316, 317
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 2 cut(s) 232, 423
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 1 cut(s) 753
RsaNI GTAC 1 cut(s) 752
SatI GCNGC 3 cut(s) 19, 915, 918
Sau3AI GATC 5 cut(s) 157, 232, 412, 423, 733
Sau96I GGNCC 2 cut(s) 316, 317
SchI GAGTC 2 cut(s) 212, 500
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 2 cut(s) 320, 606
SfaNI GCATC 4 cut(s) 88, 133, 221, 332
Sse9I AATT 4 cut(s) 258, 624, 639, 862
SsiI CCGC 3 cut(s) 321, 793, 917
SspI AATATT 1 cut(s) 843
SspMI CTAG 3 cut(s) 635, 816, 1020
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 5 cut(s) 29, 382, 703, 882, 1016
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 760, 929
TasI AATT 4 cut(s) 258, 624, 639, 862
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 2 cut(s) 371, 671
TscAI CASTG 3 cut(s) 213, 718, 1019
TseFI GTSAC 2 cut(s) 360, 1010
TseI GCWGC 2 cut(s) 18, 914
Tsp45I GTSAC 2 cut(s) 360, 1010
TspDTI ATGAA 4 cut(s) 165, 497, 872, 884
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 3 cut(s) 213, 718, 1019
Tth111I GACNNNGTC 1 cut(s) 565
Van91I CCANNNNNTGG 2 cut(s) 391, 963
XapI RAATTY 2 cut(s) 258, 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 884
XspI CTAG 3 cut(s) 635, 816, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.