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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G03630 |
| fragaria_vesca | FvH4_4g29990 FvH4_4g29990 |
| malus_domestica | MD13G1062500.v1.1 MD16G1060800.v1.1 |
| prunus_persica | Prupe.1G287500_v2.0.a1 |
| pyrus_communis | pycom16g05300 |
| rosa_chinensis | RchiOBHm_Chr4g0438271 |
| rosa_laevigata | RLG00000006375 |
| rosa_multiflora | Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00379360 |
| rosa_rugosa | Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400 |
| rosa_samantha | Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400 |
| rosa_wichuraiana | Rw0G006420 Rw0G016360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1273 |
| AccB1I | GGYRCC | 1 cut(s) | 1273 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 925 |
| AccBSI | CCGCTC | 1 cut(s) | 312 |
| AccIII | TCCGGA | 2 cut(s) | 340, 1441 |
| AclWI | GGATC | 5 cut(s) | 757, 936, 941, 952, 965 |
| AcsI | RAATTY | 1 cut(s) | 1402 |
| AcuI | CTGAAG | 3 cut(s) | 1224, 1430, 1449 |
| AfaI | GTAC | 2 cut(s) | 1174, 1275 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 925, 1527, 1528, 1533, 1559 |
| AgsI | TTSAA | 1 cut(s) | 807 |
| AjnI | CCWGG | 2 cut(s) | 1417, 1537 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 758, 790 |
| AluBI | AGCT | 4 cut(s) | 31, 718, 1414, 1629 |
| AluI | AGCT | 4 cut(s) | 31, 718, 1414, 1629 |
| Alw21I | GWGCWC | 1 cut(s) | 472 |
| Alw26I | GTCTC | 1 cut(s) | 1065 |
| AlwI | GGATC | 5 cut(s) | 757, 936, 941, 952, 965 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1202 |
| Ama87I | CYCGRG | 2 cut(s) | 1124, 1527 |
| Aor13HI | TCCGGA | 2 cut(s) | 340, 1441 |
| AoxI | GGCC | 5 cut(s) | 407, 586, 838, 1535, 1566 |
| ApeKI | GCWGC | 2 cut(s) | 1292, 1435 |
| ApoI | RAATTY | 1 cut(s) | 1402 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 249, 297, 384, 483 |
| Asp718I | GGTACC | 1 cut(s) | 1273 |
| AspS9I | GGNCC | 5 cut(s) | 587, 839, 1100, 1535, 1567 |
| AsuC2I | CCSGG | 2 cut(s) | 1528, 1529 |
| AsuHPI | GGTGA | 3 cut(s) | 528, 721, 877 |
| AvaI | CYCGRG | 2 cut(s) | 1124, 1527 |
| AvaII | GGWCC | 1 cut(s) | 1100 |
| BaeGI | GKGCMC | 1 cut(s) | 706 |
| BamHI | GGATCC | 1 cut(s) | 957 |
| BanI | GGYRCC | 1 cut(s) | 1273 |
| BauI | CACGAG | 1 cut(s) | 870 |
| BbsI | GAAGAC | 1 cut(s) | 1034 |
| Bbv12I | GWGCWC | 1 cut(s) | 472 |
| BbvI | GCAGC | 2 cut(s) | 1304, 1447 |
| BceAI | ACGGC | 2 cut(s) | 409, 1592 |
| BciT130I | CCWGG | 2 cut(s) | 1419, 1539 |
| BciVI | GTATCC | 1 cut(s) | 1000 |
| BcnI | CCSGG | 2 cut(s) | 1528, 1529 |
| BcoDI | GTCTC | 1 cut(s) | 1065 |
| BfaI | CTAG | 3 cut(s) | 24, 1308, 1356 |
| BfmI | CTRYAG | 3 cut(s) | 417, 912, 1287 |
| BfuI | GTATCC | 1 cut(s) | 1000 |
| BisI | GCNGC | 6 cut(s) | 1200, 1293, 1436, 1448, 1451, 1615 |
| BlsI | GCNGC | 6 cut(s) | 1201, 1294, 1437, 1449, 1452, 1616 |
| Bme1390I | CCNGG | 4 cut(s) | 1419, 1528, 1529, 1539 |
| Bme18I | GGWCC | 1 cut(s) | 1100 |
| BmeT110I | CYCGRG | 2 cut(s) | 1124, 1527 |
| BmgT120I | GGNCC | 5 cut(s) | 587, 839, 1100, 1535, 1567 |
| BmiI | GGNNCC | 3 cut(s) | 959, 1275, 1446 |
| BmrFI | CCNGG | 4 cut(s) | 1419, 1528, 1529, 1539 |
| BmsI | GCATC | 1 cut(s) | 1207 |
| BpiI | GAAGAC | 1 cut(s) | 1034 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 397, 429 |
| Bpu10I | CCTNAGC | 3 cut(s) | 450, 567, 684 |
| BpuEI | CTTGAG | 1 cut(s) | 1490 |
| BpuMI | CCSGG | 2 cut(s) | 1528, 1529 |
| BsaI | GGTCTC | 1 cut(s) | 1065 |
| BsaJI | CCNNGG | 1 cut(s) | 1527 |
| BsaWI | WCCGGW | 3 cut(s) | 340, 1150, 1441 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1132, 1162 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 925, 1527, 1528, 1533, 1559 |
| BseAI | TCCGGA | 2 cut(s) | 340, 1441 |
| BseBI | CCWGG | 2 cut(s) | 1419, 1539 |
| BseDI | CCNNGG | 1 cut(s) | 1527 |
| BseGI | GGATG | 4 cut(s) | 542, 659, 707, 772 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 925, 1527, 1528, 1533, 1559 |
| BseMII | CTCAG | 2 cut(s) | 1614, 1643 |
| BseRI | GAGGAG | 4 cut(s) | 65, 639, 1585, 1588 |
| BseSI | GKGCMC | 1 cut(s) | 706 |
| BseXI | GCAGC | 2 cut(s) | 1304, 1447 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1179 |
| BshFI | GGCC | 5 cut(s) | 409, 588, 840, 1537, 1568 |
| BshNI | GGYRCC | 1 cut(s) | 1273 |
| BsiEI | CGRYCG | 1 cut(s) | 1179 |
| BsiHKAI | GWGCWC | 1 cut(s) | 472 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1124, 1527 |
| BsiSI | CCGG | 5 cut(s) | 65, 341, 1151, 1442, 1528 |
| BslFI | GGGAC | 1 cut(s) | 1408 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 925, 1527, 1528, 1533, 1559 |
| BsmAI | GTCTC | 1 cut(s) | 1065 |
| BsmFI | GGGAC | 1 cut(s) | 1408 |
| BsnI | GGCC | 5 cut(s) | 409, 588, 840, 1537, 1568 |
| Bso31I | GGTCTC | 1 cut(s) | 1065 |
| BsoBI | CYCGRG | 2 cut(s) | 1124, 1527 |
| Bsp1286I | GDGCHC | 2 cut(s) | 472, 706 |
| Bsp13I | TCCGGA | 2 cut(s) | 340, 1441 |
| Bsp143I | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| BspANI | GGCC | 5 cut(s) | 409, 588, 840, 1537, 1568 |
| BspCNI | CTCAG | 2 cut(s) | 1615, 1644 |
| BspEI | TCCGGA | 2 cut(s) | 340, 1441 |
| BspLI | GGNNCC | 3 cut(s) | 959, 1275, 1446 |
| BspMAI | CTGCAG | 2 cut(s) | 421, 916 |
| BspPI | GGATC | 5 cut(s) | 757, 936, 941, 952, 965 |
| BspQI | GCTCTTC | 1 cut(s) | 1425 |
| BspT107I | GGYRCC | 1 cut(s) | 1273 |
| BspTNI | GGTCTC | 1 cut(s) | 1065 |
| BsrBI | CCGCTC | 1 cut(s) | 312 |
| BssECI | CCNNGG | 1 cut(s) | 1527 |
| BssMI | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| BssSI | CACGAG | 1 cut(s) | 870 |
| Bst2BI | CACGAG | 1 cut(s) | 870 |
| Bst2UI | CCWGG | 2 cut(s) | 1419, 1539 |
| Bst4CI | ACNGT | 3 cut(s) | 111, 1061, 1288 |
| Bst6I | CTCTTC | 2 cut(s) | 1176, 1425 |
| BstC8I | GCNNGC | 4 cut(s) | 29, 468, 702, 1471 |
| BstDEI | CTNAG | 6 cut(s) | 173, 450, 567, 684, 1623, 1652 |
| BstEII | GGTNACC | 1 cut(s) | 894 |
| BstF5I | GGATG | 4 cut(s) | 542, 659, 707, 772 |
| BstKTI | GATC | 9 cut(s) | 91, 139, 259, 752, 772, 931, 949, 960, 1179 |
| BstMAI | GTCTC | 1 cut(s) | 1065 |
| BstMBI | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| BstMCI | CGRYCG | 1 cut(s) | 1179 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 24, 1444 |
| BstNI | CCWGG | 2 cut(s) | 1419, 1539 |
| BstPI | GGTNACC | 1 cut(s) | 894 |
| BstSCI | CCNGG | 4 cut(s) | 1417, 1526, 1527, 1537 |
| BstSFI | CTRYAG | 3 cut(s) | 417, 912, 1287 |
| BstSLI | GKGCMC | 1 cut(s) | 706 |
| BstV1I | GCAGC | 2 cut(s) | 1304, 1447 |
| BstV2I | GAAGAC | 1 cut(s) | 1034 |
| BstX2I | RGATCY | 1 cut(s) | 957 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1334 |
| BstYI | RGATCY | 1 cut(s) | 957 |
| BsuI | GTATCC | 1 cut(s) | 1000 |
| BsuRI | GGCC | 5 cut(s) | 409, 588, 840, 1537, 1568 |
| BtgZI | GCGATG | 1 cut(s) | 1588 |
| BtsCI | GGATG | 4 cut(s) | 542, 659, 707, 772 |
| BtsI | GCAGTG | 1 cut(s) | 426 |
| BtsIMutI | CAGTG | 2 cut(s) | 426, 1233 |
| Cac8I | GCNNGC | 4 cut(s) | 29, 468, 702, 1471 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1202 |
| Cfr13I | GGNCC | 5 cut(s) | 587, 839, 1100, 1535, 1567 |
| Cfr9I | CCCGGG | 1 cut(s) | 1527 |
| CseI | GACGC | 2 cut(s) | 864, 1427 |
| Csp6I | GTAC | 2 cut(s) | 1173, 1274 |
| CviAII | CATG | 1 cut(s) | 14 |
| CviQI | GTAC | 2 cut(s) | 1173, 1274 |
| DdeI | CTNAG | 6 cut(s) | 173, 450, 567, 684, 1623, 1652 |
| DpnI | GATC | 9 cut(s) | 90, 138, 258, 751, 771, 930, 948, 959, 1178 |
| DpnII | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| Eam1104I | CTCTTC | 2 cut(s) | 1176, 1425 |
| EarI | CTCTTC | 2 cut(s) | 1176, 1425 |
| EciI | GGCGGA | 1 cut(s) | 1571 |
| Eco31I | GGTCTC | 1 cut(s) | 1065 |
| Eco47I | GGWCC | 1 cut(s) | 1100 |
| Eco57I | CTGAAG | 3 cut(s) | 1224, 1430, 1449 |
| Eco88I | CYCGRG | 2 cut(s) | 1124, 1527 |
| Eco91I | GGTNACC | 1 cut(s) | 894 |
| EcoO65I | GGTNACC | 1 cut(s) | 894 |
| EcoRII | CCWGG | 2 cut(s) | 1417, 1537 |
| FaeI | CATG | 1 cut(s) | 17 |
| FaqI | GGGAC | 1 cut(s) | 1408 |
| FatI | CATG | 1 cut(s) | 13 |
| FauI | CCCGC | 4 cut(s) | 226, 305, 353, 1331 |
| Fnu4HI | GCNGC | 6 cut(s) | 1200, 1293, 1436, 1448, 1451, 1615 |
| FokI | GGATG | 4 cut(s) | 529, 646, 694, 779 |
| Fsp4HI | GCNGC | 6 cut(s) | 1200, 1293, 1436, 1448, 1451, 1615 |
| FspBI | CTAG | 3 cut(s) | 24, 1308, 1356 |
| GluI | GCNGC | 6 cut(s) | 1200, 1293, 1436, 1448, 1451, 1615 |
| HaeIII | GGCC | 5 cut(s) | 409, 588, 840, 1537, 1568 |
| HapII | CCGG | 5 cut(s) | 65, 341, 1151, 1442, 1528 |
| HgaI | GACGC | 2 cut(s) | 864, 1427 |
| Hin1II | CATG | 1 cut(s) | 17 |
| HindIII | AAGCTT | 2 cut(s) | 29, 1412 |
| HinfI | GANTC | 5 cut(s) | 785, 905, 1028, 1193, 1424 |
| HpaII | CCGG | 5 cut(s) | 65, 341, 1151, 1442, 1528 |
| HphI | GGTGA | 3 cut(s) | 528, 721, 877 |
| Hpy166II | GTNNAC | 2 cut(s) | 784, 1136 |
| Hpy8I | GTNNAC | 2 cut(s) | 784, 1136 |
| HpyAV | CCTTC | 1 cut(s) | 543 |
| HpyCH4III | ACNGT | 3 cut(s) | 111, 1061, 1288 |
| HpyCH4IV | ACGT | 1 cut(s) | 492 |
| HpyCH4V | TGCA | 3 cut(s) | 125, 419, 914 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 24, 1444 |
| HpyF3I | CTNAG | 6 cut(s) | 173, 450, 567, 684, 1623, 1652 |
| HpySE526I | ACGT | 1 cut(s) | 492 |
| Hsp92II | CATG | 1 cut(s) | 17 |
| Kpn2I | TCCGGA | 2 cut(s) | 340, 1441 |
| KpnI | GGTACC | 1 cut(s) | 1277 |
| Kzo9I | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| LguI | GCTCTTC | 1 cut(s) | 1425 |
| LmnI | GCTCC | 5 cut(s) | 309, 475, 1011, 1370, 1444 |
| Lsp1109I | GCAGC | 2 cut(s) | 1304, 1447 |
| LweI | GCATC | 1 cut(s) | 1207 |
| MaeI | CTAG | 3 cut(s) | 24, 1308, 1356 |
| MaeII | ACGT | 1 cut(s) | 492 |
| MaeIII | GTNAC | 2 cut(s) | 883, 894 |
| MalI | GATC | 9 cut(s) | 90, 138, 258, 751, 771, 930, 948, 959, 1178 |
| MbiI | CCGCTC | 1 cut(s) | 312 |
| MboI | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| MboII | GAAGA | 7 cut(s) | 257, 732, 957, 1034, 1193, 1217, 1442 |
| MflI | RGATCY | 1 cut(s) | 957 |
| MhlI | GDGCHC | 2 cut(s) | 472, 706 |
| MluCI | AATT | 4 cut(s) | 1118, 1380, 1402, 1556 |
| MlyI | GAGTC | 2 cut(s) | 779, 1037 |
| MmeI | TCCRAC | 8 cut(s) | 93, 141, 189, 261, 357, 1017, 1127, 1307 |
| MroI | TCCGGA | 2 cut(s) | 340, 1441 |
| MroXI | GAANNNNTTC | 4 cut(s) | 249, 297, 384, 483 |
| MseI | TTAA | 7 cut(s) | 105, 153, 201, 273, 396, 612, 1346 |
| MslI | CAYNNNNRTG | 6 cut(s) | 465, 582, 699, 761, 1245, 1332 |
| MspA1I | CMGCKG | 2 cut(s) | 1202, 1617 |
| MspI | CCGG | 5 cut(s) | 65, 341, 1151, 1442, 1528 |
| MspR9I | CCNGG | 4 cut(s) | 1419, 1528, 1529, 1539 |
| MvaI | CCWGG | 2 cut(s) | 1419, 1539 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 24, 1444 |
| NciI | CCSGG | 2 cut(s) | 1528, 1529 |
| NdeII | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| NlaIII | CATG | 1 cut(s) | 17 |
| NlaIV | GGNNCC | 3 cut(s) | 959, 1275, 1446 |
| NmuCI | GTSAC | 1 cut(s) | 883 |
| PaeR7I | CTCGAG | 1 cut(s) | 1124 |
| PciSI | GCTCTTC | 1 cut(s) | 1425 |
| PdmI | GAANNNNTTC | 4 cut(s) | 249, 297, 384, 483 |
| PfeI | GAWTC | 3 cut(s) | 905, 1193, 1424 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 925 |
| PfoI | TCCNGGA | 1 cut(s) | 1417 |
| PkrI | GCNGC | 6 cut(s) | 1201, 1294, 1437, 1449, 1452, 1616 |
| Ple19I | CGATCG | 1 cut(s) | 1179 |
| PleI | GAGTC | 2 cut(s) | 779, 1036 |
| PpsI | GAGTC | 2 cut(s) | 779, 1036 |
| Psp6I | CCWGG | 2 cut(s) | 1417, 1537 |
| PspEI | GGTNACC | 1 cut(s) | 894 |
| PspGI | CCWGG | 2 cut(s) | 1417, 1537 |
| PspN4I | GGNNCC | 3 cut(s) | 959, 1275, 1446 |
| PspPI | GGNCC | 5 cut(s) | 587, 839, 1100, 1535, 1567 |
| PstI | CTGCAG | 2 cut(s) | 421, 916 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1202 |
| PsuI | RGATCY | 1 cut(s) | 957 |
| PvuI | CGATCG | 1 cut(s) | 1179 |
| RsaI | GTAC | 2 cut(s) | 1174, 1275 |
| RsaNI | GTAC | 2 cut(s) | 1173, 1274 |
| RseI | CAYNNNNRTG | 6 cut(s) | 465, 582, 699, 761, 1245, 1332 |
| SapI | GCTCTTC | 1 cut(s) | 1425 |
| SaqAI | TTAA | 7 cut(s) | 105, 153, 201, 273, 396, 612, 1346 |
| SatI | GCNGC | 6 cut(s) | 1200, 1293, 1436, 1448, 1451, 1615 |
| Sau3AI | GATC | 9 cut(s) | 88, 136, 256, 749, 769, 928, 946, 957, 1176 |
| Sau96I | GGNCC | 5 cut(s) | 587, 839, 1100, 1535, 1567 |
| SchI | GAGTC | 2 cut(s) | 779, 1037 |
| ScrFI | CCNGG | 4 cut(s) | 1419, 1528, 1529, 1539 |
| SduI | GDGCHC | 2 cut(s) | 472, 706 |
| SfaNI | GCATC | 1 cut(s) | 1207 |
| SfcI | CTRYAG | 3 cut(s) | 417, 912, 1287 |
| Sfr274I | CTCGAG | 1 cut(s) | 1124 |
| SinI | GGWCC | 1 cut(s) | 1100 |
| SlaI | CTCGAG | 1 cut(s) | 1124 |
| SmaI | CCCGGG | 1 cut(s) | 1529 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 465, 582, 699, 761, 1245, 1332 |
| SmlI | CTYRAG | 2 cut(s) | 1124, 1505 |
| SmoI | CTYRAG | 2 cut(s) | 1124, 1505 |
| Sse9I | AATT | 4 cut(s) | 1118, 1380, 1402, 1556 |
| SspMI | CTAG | 3 cut(s) | 24, 1308, 1356 |
| StyD4I | CCNGG | 4 cut(s) | 1417, 1526, 1527, 1537 |
| TaaI | ACNGT | 3 cut(s) | 111, 1061, 1288 |
| TaiI | ACGT | 1 cut(s) | 495 |
| TaqI | TCGA | 2 cut(s) | 1125, 1179 |
| TaqII | GACCGA | 1 cut(s) | 1088 |
| TasI | AATT | 4 cut(s) | 1118, 1380, 1402, 1556 |
| TauI | GCSGC | 4 cut(s) | 1202, 1450, 1453, 1617 |
| TfiI | GAWTC | 3 cut(s) | 905, 1193, 1424 |
| Tru1I | TTAA | 7 cut(s) | 105, 153, 201, 273, 396, 612, 1346 |
| Tru9I | TTAA | 7 cut(s) | 105, 153, 201, 273, 396, 612, 1346 |
| TscAI | CASTG | 2 cut(s) | 426, 1240 |
| TseFI | GTSAC | 1 cut(s) | 883 |
| TseI | GCWGC | 2 cut(s) | 1292, 1435 |
| Tsp45I | GTSAC | 1 cut(s) | 883 |
| TspDTI | ATGAA | 2 cut(s) | 732, 1034 |
| TspGWI | ACGGA | 3 cut(s) | 815, 917, 958 |
| TspMI | CCCGGG | 1 cut(s) | 1527 |
| TspRI | CASTG | 2 cut(s) | 426, 1240 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 925 |
| VpaK11BI | GGWCC | 1 cut(s) | 1100 |
| XapI | RAATTY | 1 cut(s) | 1402 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1000 |
| XhoI | CTCGAG | 1 cut(s) | 1124 |
| XmaI | CCCGGG | 1 cut(s) | 1527 |
| XmnI | GAANNNNTTC | 4 cut(s) | 249, 297, 384, 483 |
| XspI | CTAG | 3 cut(s) | 24, 1308, 1356 |