Rroxscaffold_5G00379360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
59775758 .. 59778854
3097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379360.1

Sequence Viewer

Length: 1674 bp
ATGGACTTGGAACATGGCAGGACTAGCAAGCTTCCAGACATTGTTATTGAGGAGATTACACAGCCGGAAACACCTGTAAGAGTTCCTGATCGGAGTGCGGAGATTAAACAGTCGGAAACAACTGCAAAAGTTCCTGATCGGAGTGGGGAGATTAAGCAGTCGGAAACACCTCTAAGAGTTCCTGATGGGAGTGGAGAGATTAAGCAGTCGGAAACTCCCGCAAAAGTTCCTGATGGGAGTGGGGAAGAAGTTCCTGATCGGAGTGGGGAGATTAAGAAGTCGGAAACTCCTGAAAAAGTTCCTGATGGGAGCGGGGAGAGTAAGCAGTCAAAAACACCTCCGGAAGTTCCTGATGGAAGCGGGGAGAGTAAGCAGTCGGAAACACTTCCAAAAGTTAATGATGGGAGGCCATCTCCTGCAGTGCCGTCCAAAGTTGTAGGGGCTACTGCTAAGGGAGGTCATCGGCGTGCTCCATCGGAAACACTTCCAGACGTATTTGATGGGAATGGAGGCAGTAAGCACCCGTCCTCTCCTTCACCCTCATCCAAAGTTGTAGAGGCTACTGCTAAGGGAGGTCATCGGCGTGGCCCATCAGGAACACTTCCAAAAGTTAATGATGGGAGTGGAGGCAGTAAGCACTCGTCCTCTCCTCCAATCTCATCCAAAGTTAGAGAGGCTACTGCTAAGGGAGGTCATCAGCGTGCCCCATCCGATAAGCTATTGTCTTTCACCTCTACATCTTCATCGGGATCAGACACATCAATGGATGATCTGTTCCAAGTGGACTCAAATATATTCTCTACTTCAACACATATTCCTCCCCTCCGTAAAGATTATGGCCCAAACTCTCCTTATCGCCCATCAACATCTCGTGCGTCAAATGTCACCAATGGGTTACCAACGGAATCCCCTGCAGTCCAAATGATGGATCGGTATGGAGGATATGATCCTTACAGGATCCCATCTTCCGTGTTTGATACAAGTAATGTATCCAACAAAGAAATGGAATGGAGCGTTGCTTCCAATGAGTCATTATTTAGTCTTCATTTAGGCAACAACAGTTTTTCCAGAGACCATATACTTATGTTGAGTGATTTCGGTCCAACCAAATCAAGTGAATTGCTCGAGATTAGTCCACGCACTCCACCTCCGGTGGTAGAAACAGAAATAAGTACGATCGAAGAGGGGAGAGAATCAGCCGCTGAAGAAGTGGCAGATGCGAACATCAAGGACACTGAACATACAAGTGCTGAAAATCATAGCGAGGGGAGGGTACCACCTCCAACTGTAGCAGCCCCTAAATCCCCTAGCCTTGCCCACTCCCGCCATTCCGATGGGAGTGGATTAAGTGGAACTAGCACACGCTCCTTTGCCTTTCCAATTTTGACAGATGGGACGAAAAATTCTCTGAAGCTTCCAGGAGATTCTGAAGAGCAGCGTCCGGAGCCGCCGCCACCACCACCACCAGCCAGCAGGACAAAAAAATCAAAGAAAAAAAAGACCCTCAAGAGTATTCAGACCCCAACCCGGGTTGGGCCAGGTGTTATCAAACCTGAATTGGGCTTGGCCCGAAACCAAATCCGCCATATTCCCTCCTCCTCCATCGCCGTTCGCCGCTGTGCTGAGAGCTTCGCCATTAGCAAACTTGGTCTGAGAAAACCAAAAAACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

557

Amino Acids

59.23

Weight (kDa)

7.28

Isoelectric Point (pI)

64.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1273
AccB1I GGYRCC 1 cut(s) 1273
AccB7I CCANNNNNTGG 1 cut(s) 925
AccBSI CCGCTC 1 cut(s) 312
AccIII TCCGGA 2 cut(s) 340, 1441
AclWI GGATC 5 cut(s) 757, 936, 941, 952, 965
AcsI RAATTY 1 cut(s) 1402
AcuI CTGAAG 3 cut(s) 1224, 1430, 1449
AfaI GTAC 2 cut(s) 1174, 1275
AfiI CCNNNNNNNGG 5 cut(s) 925, 1527, 1528, 1533, 1559
AgsI TTSAA 1 cut(s) 807
AjnI CCWGG 2 cut(s) 1417, 1537
AloI GAACNNNNNNTCC 2 cut(s) 758, 790
AluBI AGCT 4 cut(s) 31, 718, 1414, 1629
AluI AGCT 4 cut(s) 31, 718, 1414, 1629
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 1 cut(s) 1065
AlwI GGATC 5 cut(s) 757, 936, 941, 952, 965
AlwNI CAGNNNCTG 1 cut(s) 1202
Ama87I CYCGRG 2 cut(s) 1124, 1527
Aor13HI TCCGGA 2 cut(s) 340, 1441
AoxI GGCC 5 cut(s) 407, 586, 838, 1535, 1566
ApeKI GCWGC 2 cut(s) 1292, 1435
ApoI RAATTY 1 cut(s) 1402
Asp700I GAANNNNTTC 4 cut(s) 249, 297, 384, 483
Asp718I GGTACC 1 cut(s) 1273
AspS9I GGNCC 5 cut(s) 587, 839, 1100, 1535, 1567
AsuC2I CCSGG 2 cut(s) 1528, 1529
AsuHPI GGTGA 3 cut(s) 528, 721, 877
AvaI CYCGRG 2 cut(s) 1124, 1527
AvaII GGWCC 1 cut(s) 1100
BaeGI GKGCMC 1 cut(s) 706
BamHI GGATCC 1 cut(s) 957
BanI GGYRCC 1 cut(s) 1273
BauI CACGAG 1 cut(s) 870
BbsI GAAGAC 1 cut(s) 1034
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 1304, 1447
BceAI ACGGC 2 cut(s) 409, 1592
BciT130I CCWGG 2 cut(s) 1419, 1539
BciVI GTATCC 1 cut(s) 1000
BcnI CCSGG 2 cut(s) 1528, 1529
BcoDI GTCTC 1 cut(s) 1065
BfaI CTAG 3 cut(s) 24, 1308, 1356
BfmI CTRYAG 3 cut(s) 417, 912, 1287
BfuI GTATCC 1 cut(s) 1000
BisI GCNGC 6 cut(s) 1200, 1293, 1436, 1448, 1451, 1615
BlsI GCNGC 6 cut(s) 1201, 1294, 1437, 1449, 1452, 1616
Bme1390I CCNGG 4 cut(s) 1419, 1528, 1529, 1539
Bme18I GGWCC 1 cut(s) 1100
BmeT110I CYCGRG 2 cut(s) 1124, 1527
BmgT120I GGNCC 5 cut(s) 587, 839, 1100, 1535, 1567
BmiI GGNNCC 3 cut(s) 959, 1275, 1446
BmrFI CCNGG 4 cut(s) 1419, 1528, 1529, 1539
BmsI GCATC 1 cut(s) 1207
BpiI GAAGAC 1 cut(s) 1034
BplI GAGNNNNNCTC 2 cut(s) 397, 429
Bpu10I CCTNAGC 3 cut(s) 450, 567, 684
BpuEI CTTGAG 1 cut(s) 1490
BpuMI CCSGG 2 cut(s) 1528, 1529
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 1 cut(s) 1527
BsaWI WCCGGW 3 cut(s) 340, 1150, 1441
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bsc4I CCNNNNNNNGG 5 cut(s) 925, 1527, 1528, 1533, 1559
BseAI TCCGGA 2 cut(s) 340, 1441
BseBI CCWGG 2 cut(s) 1419, 1539
BseDI CCNNGG 1 cut(s) 1527
BseGI GGATG 4 cut(s) 542, 659, 707, 772
BseLI CCNNNNNNNGG 5 cut(s) 925, 1527, 1528, 1533, 1559
BseMII CTCAG 2 cut(s) 1614, 1643
BseRI GAGGAG 4 cut(s) 65, 639, 1585, 1588
BseSI GKGCMC 1 cut(s) 706
BseXI GCAGC 2 cut(s) 1304, 1447
Bsh1285I CGRYCG 1 cut(s) 1179
BshFI GGCC 5 cut(s) 409, 588, 840, 1537, 1568
BshNI GGYRCC 1 cut(s) 1273
BsiEI CGRYCG 1 cut(s) 1179
BsiHKAI GWGCWC 1 cut(s) 472
BsiHKCI CYCGRG 2 cut(s) 1124, 1527
BsiSI CCGG 5 cut(s) 65, 341, 1151, 1442, 1528
BslFI GGGAC 1 cut(s) 1408
BslI CCNNNNNNNGG 5 cut(s) 925, 1527, 1528, 1533, 1559
BsmAI GTCTC 1 cut(s) 1065
BsmFI GGGAC 1 cut(s) 1408
BsnI GGCC 5 cut(s) 409, 588, 840, 1537, 1568
Bso31I GGTCTC 1 cut(s) 1065
BsoBI CYCGRG 2 cut(s) 1124, 1527
Bsp1286I GDGCHC 2 cut(s) 472, 706
Bsp13I TCCGGA 2 cut(s) 340, 1441
Bsp143I GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
BspANI GGCC 5 cut(s) 409, 588, 840, 1537, 1568
BspCNI CTCAG 2 cut(s) 1615, 1644
BspEI TCCGGA 2 cut(s) 340, 1441
BspLI GGNNCC 3 cut(s) 959, 1275, 1446
BspMAI CTGCAG 2 cut(s) 421, 916
BspPI GGATC 5 cut(s) 757, 936, 941, 952, 965
BspQI GCTCTTC 1 cut(s) 1425
BspT107I GGYRCC 1 cut(s) 1273
BspTNI GGTCTC 1 cut(s) 1065
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 1527
BssMI GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
BssSI CACGAG 1 cut(s) 870
Bst2BI CACGAG 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 1419, 1539
Bst4CI ACNGT 3 cut(s) 111, 1061, 1288
Bst6I CTCTTC 2 cut(s) 1176, 1425
BstC8I GCNNGC 4 cut(s) 29, 468, 702, 1471
BstDEI CTNAG 6 cut(s) 173, 450, 567, 684, 1623, 1652
BstEII GGTNACC 1 cut(s) 894
BstF5I GGATG 4 cut(s) 542, 659, 707, 772
BstKTI GATC 9 cut(s) 91, 139, 259, 752, 772, 931, 949, 960, 1179
BstMAI GTCTC 1 cut(s) 1065
BstMBI GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
BstMCI CGRYCG 1 cut(s) 1179
BstMWI GCNNNNNNNGC 2 cut(s) 24, 1444
BstNI CCWGG 2 cut(s) 1419, 1539
BstPI GGTNACC 1 cut(s) 894
BstSCI CCNGG 4 cut(s) 1417, 1526, 1527, 1537
BstSFI CTRYAG 3 cut(s) 417, 912, 1287
BstSLI GKGCMC 1 cut(s) 706
BstV1I GCAGC 2 cut(s) 1304, 1447
BstV2I GAAGAC 1 cut(s) 1034
BstX2I RGATCY 1 cut(s) 957
BstXI CCANNNNNNTGG 1 cut(s) 1334
BstYI RGATCY 1 cut(s) 957
BsuI GTATCC 1 cut(s) 1000
BsuRI GGCC 5 cut(s) 409, 588, 840, 1537, 1568
BtgZI GCGATG 1 cut(s) 1588
BtsCI GGATG 4 cut(s) 542, 659, 707, 772
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 426, 1233
Cac8I GCNNGC 4 cut(s) 29, 468, 702, 1471
CaiI CAGNNNCTG 1 cut(s) 1202
Cfr13I GGNCC 5 cut(s) 587, 839, 1100, 1535, 1567
Cfr9I CCCGGG 1 cut(s) 1527
CseI GACGC 2 cut(s) 864, 1427
Csp6I GTAC 2 cut(s) 1173, 1274
CviAII CATG 1 cut(s) 14
CviQI GTAC 2 cut(s) 1173, 1274
DdeI CTNAG 6 cut(s) 173, 450, 567, 684, 1623, 1652
DpnI GATC 9 cut(s) 90, 138, 258, 751, 771, 930, 948, 959, 1178
DpnII GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
Eam1104I CTCTTC 2 cut(s) 1176, 1425
EarI CTCTTC 2 cut(s) 1176, 1425
EciI GGCGGA 1 cut(s) 1571
Eco31I GGTCTC 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 1100
Eco57I CTGAAG 3 cut(s) 1224, 1430, 1449
Eco88I CYCGRG 2 cut(s) 1124, 1527
Eco91I GGTNACC 1 cut(s) 894
EcoO65I GGTNACC 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 1417, 1537
FaeI CATG 1 cut(s) 17
FaqI GGGAC 1 cut(s) 1408
FatI CATG 1 cut(s) 13
FauI CCCGC 4 cut(s) 226, 305, 353, 1331
Fnu4HI GCNGC 6 cut(s) 1200, 1293, 1436, 1448, 1451, 1615
FokI GGATG 4 cut(s) 529, 646, 694, 779
Fsp4HI GCNGC 6 cut(s) 1200, 1293, 1436, 1448, 1451, 1615
FspBI CTAG 3 cut(s) 24, 1308, 1356
GluI GCNGC 6 cut(s) 1200, 1293, 1436, 1448, 1451, 1615
HaeIII GGCC 5 cut(s) 409, 588, 840, 1537, 1568
HapII CCGG 5 cut(s) 65, 341, 1151, 1442, 1528
HgaI GACGC 2 cut(s) 864, 1427
Hin1II CATG 1 cut(s) 17
HindIII AAGCTT 2 cut(s) 29, 1412
HinfI GANTC 5 cut(s) 785, 905, 1028, 1193, 1424
HpaII CCGG 5 cut(s) 65, 341, 1151, 1442, 1528
HphI GGTGA 3 cut(s) 528, 721, 877
Hpy166II GTNNAC 2 cut(s) 784, 1136
Hpy8I GTNNAC 2 cut(s) 784, 1136
HpyAV CCTTC 1 cut(s) 543
HpyCH4III ACNGT 3 cut(s) 111, 1061, 1288
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 125, 419, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 1444
HpyF3I CTNAG 6 cut(s) 173, 450, 567, 684, 1623, 1652
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 1 cut(s) 17
Kpn2I TCCGGA 2 cut(s) 340, 1441
KpnI GGTACC 1 cut(s) 1277
Kzo9I GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
LguI GCTCTTC 1 cut(s) 1425
LmnI GCTCC 5 cut(s) 309, 475, 1011, 1370, 1444
Lsp1109I GCAGC 2 cut(s) 1304, 1447
LweI GCATC 1 cut(s) 1207
MaeI CTAG 3 cut(s) 24, 1308, 1356
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 883, 894
MalI GATC 9 cut(s) 90, 138, 258, 751, 771, 930, 948, 959, 1178
MbiI CCGCTC 1 cut(s) 312
MboI GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
MboII GAAGA 7 cut(s) 257, 732, 957, 1034, 1193, 1217, 1442
MflI RGATCY 1 cut(s) 957
MhlI GDGCHC 2 cut(s) 472, 706
MluCI AATT 4 cut(s) 1118, 1380, 1402, 1556
MlyI GAGTC 2 cut(s) 779, 1037
MmeI TCCRAC 8 cut(s) 93, 141, 189, 261, 357, 1017, 1127, 1307
MroI TCCGGA 2 cut(s) 340, 1441
MroXI GAANNNNTTC 4 cut(s) 249, 297, 384, 483
MseI TTAA 7 cut(s) 105, 153, 201, 273, 396, 612, 1346
MslI CAYNNNNRTG 6 cut(s) 465, 582, 699, 761, 1245, 1332
MspA1I CMGCKG 2 cut(s) 1202, 1617
MspI CCGG 5 cut(s) 65, 341, 1151, 1442, 1528
MspR9I CCNGG 4 cut(s) 1419, 1528, 1529, 1539
MvaI CCWGG 2 cut(s) 1419, 1539
MwoI GCNNNNNNNGC 2 cut(s) 24, 1444
NciI CCSGG 2 cut(s) 1528, 1529
NdeII GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 3 cut(s) 959, 1275, 1446
NmuCI GTSAC 1 cut(s) 883
PaeR7I CTCGAG 1 cut(s) 1124
PciSI GCTCTTC 1 cut(s) 1425
PdmI GAANNNNTTC 4 cut(s) 249, 297, 384, 483
PfeI GAWTC 3 cut(s) 905, 1193, 1424
PflMI CCANNNNNTGG 1 cut(s) 925
PfoI TCCNGGA 1 cut(s) 1417
PkrI GCNGC 6 cut(s) 1201, 1294, 1437, 1449, 1452, 1616
Ple19I CGATCG 1 cut(s) 1179
PleI GAGTC 2 cut(s) 779, 1036
PpsI GAGTC 2 cut(s) 779, 1036
Psp6I CCWGG 2 cut(s) 1417, 1537
PspEI GGTNACC 1 cut(s) 894
PspGI CCWGG 2 cut(s) 1417, 1537
PspN4I GGNNCC 3 cut(s) 959, 1275, 1446
PspPI GGNCC 5 cut(s) 587, 839, 1100, 1535, 1567
PstI CTGCAG 2 cut(s) 421, 916
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 957
PvuI CGATCG 1 cut(s) 1179
RsaI GTAC 2 cut(s) 1174, 1275
RsaNI GTAC 2 cut(s) 1173, 1274
RseI CAYNNNNRTG 6 cut(s) 465, 582, 699, 761, 1245, 1332
SapI GCTCTTC 1 cut(s) 1425
SaqAI TTAA 7 cut(s) 105, 153, 201, 273, 396, 612, 1346
SatI GCNGC 6 cut(s) 1200, 1293, 1436, 1448, 1451, 1615
Sau3AI GATC 9 cut(s) 88, 136, 256, 749, 769, 928, 946, 957, 1176
Sau96I GGNCC 5 cut(s) 587, 839, 1100, 1535, 1567
SchI GAGTC 2 cut(s) 779, 1037
ScrFI CCNGG 4 cut(s) 1419, 1528, 1529, 1539
SduI GDGCHC 2 cut(s) 472, 706
SfaNI GCATC 1 cut(s) 1207
SfcI CTRYAG 3 cut(s) 417, 912, 1287
Sfr274I CTCGAG 1 cut(s) 1124
SinI GGWCC 1 cut(s) 1100
SlaI CTCGAG 1 cut(s) 1124
SmaI CCCGGG 1 cut(s) 1529
SmiMI CAYNNNNRTG 6 cut(s) 465, 582, 699, 761, 1245, 1332
SmlI CTYRAG 2 cut(s) 1124, 1505
SmoI CTYRAG 2 cut(s) 1124, 1505
Sse9I AATT 4 cut(s) 1118, 1380, 1402, 1556
SspMI CTAG 3 cut(s) 24, 1308, 1356
StyD4I CCNGG 4 cut(s) 1417, 1526, 1527, 1537
TaaI ACNGT 3 cut(s) 111, 1061, 1288
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 1125, 1179
TaqII GACCGA 1 cut(s) 1088
TasI AATT 4 cut(s) 1118, 1380, 1402, 1556
TauI GCSGC 4 cut(s) 1202, 1450, 1453, 1617
TfiI GAWTC 3 cut(s) 905, 1193, 1424
Tru1I TTAA 7 cut(s) 105, 153, 201, 273, 396, 612, 1346
Tru9I TTAA 7 cut(s) 105, 153, 201, 273, 396, 612, 1346
TscAI CASTG 2 cut(s) 426, 1240
TseFI GTSAC 1 cut(s) 883
TseI GCWGC 2 cut(s) 1292, 1435
Tsp45I GTSAC 1 cut(s) 883
TspDTI ATGAA 2 cut(s) 732, 1034
TspGWI ACGGA 3 cut(s) 815, 917, 958
TspMI CCCGGG 1 cut(s) 1527
TspRI CASTG 2 cut(s) 426, 1240
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 1100
XapI RAATTY 1 cut(s) 1402
XcmI CCANNNNNNNNNTGG 1 cut(s) 1000
XhoI CTCGAG 1 cut(s) 1124
XmaI CCCGGG 1 cut(s) 1527
XmnI GAANNNNTTC 4 cut(s) 249, 297, 384, 483
XspI CTAG 3 cut(s) 24, 1308, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.