Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

3445448 .. 3447122

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGACTTGGAACCTGGAAGCAAGAACAGCGAGAAGTCAGAACGAGTTGTTGATGGGAGTGAAGGCAGTAAGCACCCTGAAACACCAAAGGTCGTTGATGGGAGTGATAGCAGTAGCCATTTAACAATACTTCCAGAGGCTACTGCTAATGAAGGTGGTCCTGTCCCGACCAGAAGACTAATCTCGATATCCTCTTTGTCTTCGTTGGCATCAGACTCGTCATTGGAAGATCTATTCCAAGTGGATACAAACAGAATTACAACTTCAACACATACTGCTTCCGTCCCTAAACATGATGACTATAACATTGTAGGTCCCGCATCAACATCCCGGGCTTCTGATGTCACCCATGGGTCCATGGTGCCTGGTTTGTCACCAACAGATTCCCCTTCAGTCCAAACTATGGATCGGTGTGGTGGATATGATCGATCACCCTCTTACAGGATCCCGACTTCTGTGTTTTCAACAAGTAAATCCAACAAAGAAATGGATTGGAGTGTTGCATCCAATGAGTCATTGTTTAGCATTCATTTAGGCAACAACAGCTTTTCCAGAGACCACACATTTTTTCTCGGTGATTTGGGCAAGTCTGGGGAACTGTACAAATCAGGCGAGTTGTTTTCGCTCAATCCAGCCCCTCCAGTTCCAGTGGTAGAAATTGAAAGTGACAGGATTGAAGAAGTGAGGAAATCTGGAGTTGGAGTGGCAGATGAGACCATCAAGGACATAGCAAGAGCAAATGCTGAAGATCATAGTGAGGGAAGGGTACCACCGCCAACTGTTTTTGGAAAATCCCCTAGCCTCTCTCGCCGTTCTGATGGGAGTGGGACTAGCACACGCTCTTTTGCCTTCCCAATGTACGTCTATATACATTATCTAAGATTGACAAATGGGATGAAAAGTTCTGTGAAGGTTACAGAGCCGTGTCTGGAGCAGCCGCTGCCACAACCACCAGTCAGATTATCGCCTAAAAAAGTGACCAAATCAAAGGTCACCTATTGGTTTCGTTGCTTTTCTTGGTTCAAGTGGGGTTGTTCTTGTCACCGGCGTCATTGTTGTTCTTACTGTTGCTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

39.2

Weight (kDa)

6.6

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	766
AccB1I	GGYRCC	2 cut(s)	361, 766
AccB7I	CCANNNNNTGG	1 cut(s)	403
AciI	CCGC	3 cut(s)	318, 773, 938
AclWI	GGATC	3 cut(s)	414, 439, 452
AcuI	CTGAAG	2 cut(s)	375, 765
AcyI	GRCGYC	1 cut(s)	1048
AfaI	GTAC	3 cut(s)	602, 768, 860
AfiI	CCNNNNNNNGG	2 cut(s)	403, 441
AgsI	TTSAA	5 cut(s)	267, 465, 662, 677, 1024
AjnI	CCWGG	2 cut(s)	13, 364
AloI	GAACNNNNNNTCC	2 cut(s)	886, 918
AluBI	AGCT	1 cut(s)	546
AluI	AGCT	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	549, 707
AlwI	GGATC	3 cut(s)	414, 439, 452
AlwNI	CAGNNNCTG	1 cut(s)	940
Ama87I	CYCGRG	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	934, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	975, 1007
Asp718I	GGTACC	1 cut(s)	766
AspS9I	GGNCC	3 cut(s)	158, 314, 354
AsuC2I	CCSGG	2 cut(s)	331, 332
AsuHPI	GGTGA	6 cut(s)	337, 366, 423, 587, 985, 1034
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	3 cut(s)	158, 314, 354
BamHI	GGATCC	1 cut(s)	444
BanI	GGYRCC	2 cut(s)	361, 766
BbsI	GAAGAC	2 cut(s)	181, 192
BbvI	GCAGC	2 cut(s)	927, 946
BccI	CCATC	4 cut(s)	47, 92, 725, 812
BceAI	ACGGC	2 cut(s)	795, 907
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	2 cut(s)	15, 366
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	331, 332
BcoDI	GTCTC	2 cut(s)	549, 707
BfaI	CTAG	2 cut(s)	798, 831
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	3 cut(s)	935, 938, 941
BlsI	GCNGC	3 cut(s)	936, 939, 942
Bme1390I	CCNGG	4 cut(s)	15, 331, 332, 366
Bme18I	GGWCC	3 cut(s)	158, 314, 354
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	3 cut(s)	158, 314, 354
BmiI	GGNNCC	6 cut(s)	12, 316, 355, 363, 446, 768
BmrFI	CCNGG	4 cut(s)	15, 331, 332, 366
BmsI	GCATC	3 cut(s)	218, 329, 512
BpiI	GAAGAC	2 cut(s)	181, 192
BpmI	CTGGAG	3 cut(s)	624, 714, 950
BpuMI	CCSGG	2 cut(s)	331, 332
Bsa29I	ATCGAT	1 cut(s)	427
BsaHI	GRCGYC	1 cut(s)	1048
BsaI	GGTCTC	2 cut(s)	549, 707
BsaJI	CCNNGG	3 cut(s)	330, 349, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 441
Bse118I	RCCGGY	1 cut(s)	1044
Bse1I	ACTGG	3 cut(s)	641, 647, 953
BseBI	CCWGG	2 cut(s)	15, 366
BseCI	ATCGAT	1 cut(s)	427
BseDI	CCNNGG	3 cut(s)	330, 349, 357
BseGI	GGATG	3 cut(s)	326, 503, 900
BseLI	CCNNNNNNNGG	2 cut(s)	403, 441
BseNI	ACTGG	3 cut(s)	641, 647, 953
BseXI	GCAGC	2 cut(s)	927, 946
BshNI	GGYRCC	2 cut(s)	361, 766
BshVI	ATCGAT	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	331, 1045
BslFI	GGGAC	4 cut(s)	149, 269, 300, 841
BslI	CCNNNNNNNGG	2 cut(s)	403, 441
BsmAI	GTCTC	2 cut(s)	549, 707
BsmFI	GGGAC	4 cut(s)	149, 269, 300, 841
BsmI	GAATGC	1 cut(s)	525
Bso31I	GGTCTC	2 cut(s)	549, 707
BsoBI	CYCGRG	1 cut(s)	330
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
Bsp19I	CCATGG	2 cut(s)	349, 357
BspACI	CCGC	3 cut(s)	318, 773, 938
BspDI	ATCGAT	1 cut(s)	427
BspLI	GGNNCC	6 cut(s)	12, 316, 355, 363, 446, 768
BspPI	GGATC	3 cut(s)	414, 439, 452
BspT107I	GGYRCC	2 cut(s)	361, 766
BspTNI	GGTCTC	2 cut(s)	549, 707
BsrFI	RCCGGY	1 cut(s)	1044
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	641, 647, 953
BssAI	RCCGGY	1 cut(s)	1044
BssECI	CCNNGG	3 cut(s)	330, 349, 357
BssMI	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
BssNI	GRCGYC	1 cut(s)	1048
BssT1I	CCWWGG	2 cut(s)	349, 357
Bst2UI	CCWGG	2 cut(s)	15, 366
Bst4CI	ACNGT	3 cut(s)	600, 781, 1067
BstACI	GRCGYC	1 cut(s)	1048
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	878
BstDSI	CCRYGG	2 cut(s)	349, 357
BstEII	GGTNACC	1 cut(s)	991
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	326, 503, 900
BstKTI	GATC	6 cut(s)	232, 409, 427, 431, 447, 751
BstMAI	GTCTC	2 cut(s)	549, 707
BstMBI	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 543, 807, 940
BstNI	CCWGG	2 cut(s)	15, 366
BstPI	GGTNACC	1 cut(s)	991
BstSCI	CCNGG	4 cut(s)	13, 329, 330, 364
BstV1I	GCAGC	2 cut(s)	927, 946
BstV2I	GAAGAC	2 cut(s)	181, 192
BstX2I	RGATCY	2 cut(s)	229, 444
BstYI	RGATCY	2 cut(s)	229, 444
Bsu15I	ATCGAT	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	427
BtgI	CCRYGG	2 cut(s)	349, 357
BtsCI	GGATG	3 cut(s)	326, 503, 900
BtsIMutI	CAGTG	1 cut(s)	654
CaiI	CAGNNNCTG	1 cut(s)	940
Cfr10I	RCCGGY	1 cut(s)	1044
Cfr13I	GGNCC	3 cut(s)	158, 314, 354
Cfr9I	CCCGGG	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	427
CseI	GACGC	1 cut(s)	1037
Csp6I	GTAC	3 cut(s)	601, 767, 859
CviAII	CATG	3 cut(s)	293, 350, 358
CviJI	RGCY	8 cut(s)	117, 140, 335, 546, 635, 801, 922, 937
CviKI_1	RGCY	8 cut(s)	117, 140, 335, 546, 635, 801, 922, 937
CviQI	GTAC	3 cut(s)	601, 767, 859
DdeI	CTNAG	1 cut(s)	878
DpnI	GATC	6 cut(s)	231, 408, 426, 430, 446, 750
DpnII	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
Eco130I	CCWWGG	2 cut(s)	349, 357
Eco31I	GGTCTC	2 cut(s)	549, 707
Eco32I	GATATC	1 cut(s)	189
Eco47I	GGWCC	3 cut(s)	158, 314, 354
Eco57I	CTGAAG	2 cut(s)	375, 765
Eco88I	CYCGRG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	991
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	13, 364
EcoRV	GATATC	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	349, 357
ErhI	CCWWGG	2 cut(s)	349, 357
FaeI	CATG	3 cut(s)	296, 353, 361
FaqI	GGGAC	4 cut(s)	149, 269, 300, 841
FatI	CATG	3 cut(s)	292, 349, 357
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	935, 938, 941
FokI	GGATG	3 cut(s)	313, 490, 907
Fsp4HI	GCNGC	3 cut(s)	935, 938, 941
FspBI	CTAG	2 cut(s)	798, 831
GluI	GCNGC	3 cut(s)	935, 938, 941
GsuI	CTGGAG	3 cut(s)	624, 714, 950
HapII	CCGG	2 cut(s)	331, 1045
HgaI	GACGC	1 cut(s)	1037
Hin1I	GRCGYC	1 cut(s)	1048
Hin1II	CATG	3 cut(s)	296, 353, 361
HinfI	GANTC	3 cut(s)	215, 383, 512
HpaII	CCGG	2 cut(s)	331, 1045
HphI	GGTGA	6 cut(s)	337, 366, 423, 587, 985, 1034
Hpy188I	TCNGA	5 cut(s)	40, 214, 340, 817, 959
Hpy188III	TCNNGA	7 cut(s)	134, 166, 184, 448, 552, 693, 929
HpyAV	CCTTC	6 cut(s)	56, 146, 399, 756, 859, 904
HpyCH4III	ACNGT	3 cut(s)	600, 781, 1067
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 543, 807, 940
HpyF3I	CTNAG	1 cut(s)	878
HpySE526I	ACGT	1 cut(s)	861
Hsp92I	GRCGYC	1 cut(s)	1048
Hsp92II	CATG	3 cut(s)	296, 353, 361
KpnI	GGTACC	1 cut(s)	770
Kzo9I	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
LmnI	GCTCC	1 cut(s)	931
Lsp1109I	GCAGC	2 cut(s)	927, 946
LweI	GCATC	3 cut(s)	218, 329, 512
MaeI	CTAG	2 cut(s)	798, 831
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	7 cut(s)	343, 372, 665, 913, 976, 991, 1040
MalI	GATC	6 cut(s)	231, 408, 426, 430, 446, 750
MboI	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
MboII	GAAGA	5 cut(s)	186, 192, 239, 689, 758
MflI	RGATCY	2 cut(s)	229, 444
MluCI	AATT	2 cut(s)	255, 657
MlyI	GAGTC	2 cut(s)	209, 521
MmeI	TCCRAC	2 cut(s)	501, 679
MnlI	CCTC	7 cut(s)	130, 202, 445, 648, 678, 751, 812
MseI	TTAA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	2 cut(s)	331, 1045
MspR9I	CCNGG	4 cut(s)	15, 331, 332, 366
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	15, 366
MwoI	GCNNNNNNNGC	4 cut(s)	27, 543, 807, 940
NciI	CCSGG	2 cut(s)	331, 332
NcoI	CCATGG	2 cut(s)	349, 357
NdeII	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
NlaIII	CATG	3 cut(s)	296, 353, 361
NlaIV	GGNNCC	6 cut(s)	12, 316, 355, 363, 446, 768
NmuCI	GTSAC	6 cut(s)	343, 372, 665, 976, 991, 1040
PctI	GAATGC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	936, 939, 942
PleI	GAGTC	2 cut(s)	209, 520
PpsI	GAGTC	2 cut(s)	209, 520
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	13, 364
PspEI	GGTNACC	1 cut(s)	991
PspGI	CCWGG	2 cut(s)	13, 364
PspN4I	GGNNCC	6 cut(s)	12, 316, 355, 363, 446, 768
PspPI	GGNCC	3 cut(s)	158, 314, 354
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	229, 444
RsaI	GTAC	3 cut(s)	602, 768, 860
RsaNI	GTAC	3 cut(s)	601, 767, 859
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	3 cut(s)	935, 938, 941
Sau3AI	GATC	6 cut(s)	229, 406, 424, 428, 444, 748
Sau96I	GGNCC	3 cut(s)	158, 314, 354
SchI	GAGTC	2 cut(s)	209, 521
ScrFI	CCNGG	4 cut(s)	15, 331, 332, 366
SetI	ASST	9 cut(s)	16, 93, 157, 316, 548, 864, 915, 993, 998
SfaNI	GCATC	3 cut(s)	218, 329, 512
SgrAI	CRCCGGYG	1 cut(s)	1044
SinI	GGWCC	3 cut(s)	158, 314, 354
SmaI	CCCGGG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	255, 657
SsiI	CCGC	3 cut(s)	318, 773, 938
SspMI	CTAG	2 cut(s)	798, 831
StyD4I	CCNGG	4 cut(s)	13, 329, 330, 364
StyI	CCWWGG	2 cut(s)	349, 357
TaaI	ACNGT	3 cut(s)	600, 781, 1067
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	185, 427
TasI	AATT	2 cut(s)	255, 657
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	6 cut(s)	343, 372, 665, 976, 991, 1040
TseI	GCWGC	2 cut(s)	934, 940
Tsp45I	GTSAC	6 cut(s)	343, 372, 665, 976, 991, 1040
TspDTI	ATGAA	3 cut(s)	165, 518, 911
TspGWI	ACGGA	1 cut(s)	271
TspMI	CCCGGG	1 cut(s)	330
TspRI	CASTG	1 cut(s)	654
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	3 cut(s)	158, 314, 354
XagI	CCTNNNNNAGG	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmaI	CCCGGG	1 cut(s)	330
XspI	CTAG	2 cut(s)	798, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.