Proteinaceous RNase P 1, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32230 AT2G32230 |
| fragaria_vesca | FvH4_4g29971 |
| malus_domestica | MD13G1062300.v1.1 MD16G1060600.v1.1 |
| prunus_persica | Prupe.1G287700_v2.0.a1 |
| pyrus_communis | pycom16g05280 |
| rosa_chinensis | RchiOBHm_Chr4g0438251 |
| rosa_laevigata | RLG00000006377 |
| rosa_multiflora | Rmu_sc0011129.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00379340 |
| rosa_rugosa | Rorug04G0308300 |
| rosa_samantha | Rh4AG359400 Rh4BG370200 Rh4DG365300 |
| rosa_wichuraiana | Rw0G006400 Rw0G016340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 387 |
| Acc36I | ACCTGC | 1 cut(s) | 799 |
| AccB1I | GGYRCC | 2 cut(s) | 220, 1175 |
| AccI | GTMKAC | 1 cut(s) | 821 |
| AccII | CGCG | 1 cut(s) | 208 |
| AciI | CCGC | 9 cut(s) | 73, 368, 533, 539, 599, 793, 863, 1017, 1609 |
| AclWI | GGATC | 1 cut(s) | 1040 |
| AcoI | YGGCCR | 1 cut(s) | 1018 |
| AcsI | RAATTY | 1 cut(s) | 1063 |
| AcuI | CTGAAG | 1 cut(s) | 1124 |
| AcvI | CACGTG | 1 cut(s) | 1618 |
| AcyI | GRCGYC | 1 cut(s) | 221 |
| AfaI | GTAC | 3 cut(s) | 97, 279, 1406 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 556, 609, 1102 |
| AflIII | ACRYGT | 1 cut(s) | 297 |
| AgeI | ACCGGT | 2 cut(s) | 786, 1239 |
| AgsI | TTSAA | 5 cut(s) | 448, 1081, 1129, 1392, 1581 |
| AjnI | CCWGG | 2 cut(s) | 305, 318 |
| AluBI | AGCT | 6 cut(s) | 292, 329, 665, 1027, 1212, 1222 |
| AluI | AGCT | 6 cut(s) | 292, 329, 665, 1027, 1212, 1222 |
| Alw21I | GWGCWC | 2 cut(s) | 410, 1369 |
| Alw26I | GTCTC | 4 cut(s) | 817, 1458, 1543, 1640 |
| Alw44I | GTGCAC | 1 cut(s) | 1365 |
| AlwI | GGATC | 1 cut(s) | 1040 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1663 |
| Ama87I | CYCGRG | 1 cut(s) | 1540 |
| AoxI | GGCC | 7 cut(s) | 313, 348, 504, 558, 619, 1018, 1309 |
| ApaLI | GTGCAC | 1 cut(s) | 1365 |
| ApeKI | GCWGC | 4 cut(s) | 84, 521, 536, 1418 |
| ApoI | RAATTY | 1 cut(s) | 1063 |
| AsiGI | ACCGGT | 2 cut(s) | 786, 1239 |
| AspLEI | GCGC | 2 cut(s) | 11, 223 |
| AspS9I | GGNCC | 6 cut(s) | 313, 547, 612, 620, 1151, 1310 |
| AsuC2I | CCSGG | 2 cut(s) | 551, 623 |
| AsuHPI | GGTGA | 7 cut(s) | 192, 583, 773, 913, 1246, 1456, 1646 |
| AsuII | TTCGAA | 1 cut(s) | 1528 |
| AsuNHI | GCTAGC | 1 cut(s) | 1091 |
| AvaI | CYCGRG | 1 cut(s) | 1540 |
| AvaII | GGWCC | 3 cut(s) | 547, 612, 1151 |
| BaeGI | GKGCMC | 2 cut(s) | 498, 1369 |
| BanI | GGYRCC | 2 cut(s) | 220, 1175 |
| BanII | GRGCYC | 2 cut(s) | 366, 1259 |
| BbrPI | CACGTG | 1 cut(s) | 1618 |
| Bbv12I | GWGCWC | 2 cut(s) | 410, 1369 |
| BbvCI | CCTCAGC | 1 cut(s) | 708 |
| BbvI | GCAGC | 4 cut(s) | 71, 508, 548, 1405 |
| BccI | CCATC | 8 cut(s) | 177, 428, 469, 871, 982, 1166, 1500, 1598 |
| BceAI | ACGGC | 1 cut(s) | 634 |
| BciT130I | CCWGG | 2 cut(s) | 307, 320 |
| BcnI | CCSGG | 2 cut(s) | 551, 623 |
| BcoDI | GTCTC | 4 cut(s) | 817, 1458, 1543, 1640 |
| BfaI | CTAG | 4 cut(s) | 525, 753, 1092, 1484 |
| BfoI | RGCGCY | 2 cut(s) | 12, 224 |
| BfuAI | ACCTGC | 1 cut(s) | 799 |
| BisI | GCNGC | 8 cut(s) | 85, 522, 534, 537, 540, 864, 1018, 1419 |
| BlsI | GCNGC | 8 cut(s) | 86, 523, 535, 538, 541, 865, 1019, 1420 |
| Bme1390I | CCNGG | 4 cut(s) | 307, 320, 551, 623 |
| Bme18I | GGWCC | 3 cut(s) | 547, 612, 1151 |
| BmeT110I | CYCGRG | 1 cut(s) | 1540 |
| BmgT120I | GGNCC | 6 cut(s) | 313, 547, 612, 620, 1151, 1310 |
| BmiI | GGNNCC | 6 cut(s) | 167, 222, 365, 549, 714, 1177 |
| BmrFI | CCNGG | 4 cut(s) | 307, 320, 551, 623 |
| BmsI | GCATC | 2 cut(s) | 667, 1150 |
| BmtI | GCTAGC | 1 cut(s) | 1095 |
| Bpu10I | CCTNAGC | 1 cut(s) | 708 |
| Bpu14I | TTCGAA | 1 cut(s) | 1528 |
| BpuMI | CCSGG | 2 cut(s) | 551, 623 |
| Bsa29I | ATCGAT | 1 cut(s) | 1038 |
| BsaAI | YACGTR | 1 cut(s) | 1618 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1044 |
| BsaHI | GRCGYC | 1 cut(s) | 221 |
| BsaI | GGTCTC | 3 cut(s) | 817, 1458, 1640 |
| BsaJI | CCNNGG | 3 cut(s) | 138, 153, 1652 |
| BsaWI | WCCGGW | 2 cut(s) | 786, 1239 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 134, 164, 830, 860 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 556, 609, 1102 |
| Bse118I | RCCGGY | 2 cut(s) | 786, 1239 |
| Bse1I | ACTGG | 4 cut(s) | 231, 516, 1309, 1412 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1044 |
| BseBI | CCWGG | 2 cut(s) | 307, 320 |
| BseCI | ATCGAT | 1 cut(s) | 1038 |
| BseDI | CCNNGG | 3 cut(s) | 138, 153, 1652 |
| BseGI | GGATG | 4 cut(s) | 882, 895, 997, 1609 |
| BseJI | GATNNNNATC | 1 cut(s) | 1044 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 556, 609, 1102 |
| BseMII | CTCAG | 7 cut(s) | 272, 323, 699, 708, 998, 1050, 1331 |
| BseNI | ACTGG | 4 cut(s) | 231, 516, 1309, 1412 |
| BseRI | GAGGAG | 5 cut(s) | 28, 725, 854, 872, 936 |
| BseSI | GKGCMC | 2 cut(s) | 498, 1369 |
| BseXI | GCAGC | 4 cut(s) | 71, 508, 548, 1405 |
| BseYI | CCCAGC | 1 cut(s) | 1218 |
| BsgI | GTGCAG | 1 cut(s) | 362 |
| Bsh1236I | CGCG | 1 cut(s) | 208 |
| BshFI | GGCC | 7 cut(s) | 315, 350, 506, 560, 621, 1020, 1311 |
| BshNI | GGYRCC | 2 cut(s) | 220, 1175 |
| BshTI | ACCGGT | 2 cut(s) | 786, 1239 |
| BshVI | ATCGAT | 1 cut(s) | 1038 |
| BsiHKAI | GWGCWC | 2 cut(s) | 410, 1369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1540 |
| BsiSI | CCGG | 5 cut(s) | 269, 551, 623, 787, 1240 |
| BslFI | GGGAC | 3 cut(s) | 1015, 1501, 1563 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 556, 609, 1102 |
| BsmAI | GTCTC | 4 cut(s) | 817, 1458, 1543, 1640 |
| BsmFI | GGGAC | 3 cut(s) | 1015, 1501, 1563 |
| BsnI | GGCC | 7 cut(s) | 315, 350, 506, 560, 621, 1020, 1311 |
| Bso31I | GGTCTC | 3 cut(s) | 817, 1458, 1640 |
| BsoBI | CYCGRG | 1 cut(s) | 1540 |
| Bsp119I | TTCGAA | 1 cut(s) | 1528 |
| Bsp1286I | GDGCHC | 5 cut(s) | 366, 410, 498, 1259, 1369 |
| Bsp143I | GATC | 1 cut(s) | 1045 |
| Bsp19I | CCATGG | 2 cut(s) | 138, 153 |
| BspACI | CCGC | 9 cut(s) | 73, 368, 533, 539, 599, 793, 863, 1017, 1609 |
| BspANI | GGCC | 7 cut(s) | 315, 350, 506, 560, 621, 1020, 1311 |
| BspCNI | CTCAG | 7 cut(s) | 273, 324, 700, 709, 997, 1051, 1330 |
| BspDI | ATCGAT | 1 cut(s) | 1038 |
| BspFNI | CGCG | 1 cut(s) | 208 |
| BspLI | GGNNCC | 6 cut(s) | 167, 222, 365, 549, 714, 1177 |
| BspMI | ACCTGC | 1 cut(s) | 799 |
| BspOI | GCTAGC | 1 cut(s) | 1095 |
| BspPI | GGATC | 1 cut(s) | 1040 |
| BspQI | GCTCTTC | 1 cut(s) | 415 |
| BspT104I | TTCGAA | 1 cut(s) | 1528 |
| BspT107I | GGYRCC | 2 cut(s) | 220, 1175 |
| BspTNI | GGTCTC | 3 cut(s) | 817, 1458, 1640 |
| BsrFI | RCCGGY | 2 cut(s) | 786, 1239 |
| BsrI | ACTGG | 4 cut(s) | 231, 516, 1309, 1412 |
| BssAI | RCCGGY | 2 cut(s) | 786, 1239 |
| BssECI | CCNNGG | 3 cut(s) | 138, 153, 1652 |
| BssMI | GATC | 1 cut(s) | 1045 |
| BssNI | GRCGYC | 1 cut(s) | 221 |
| BssT1I | CCWWGG | 3 cut(s) | 138, 153, 1652 |
| Bst2UI | CCWGG | 2 cut(s) | 307, 320 |
| Bst6I | CTCTTC | 3 cut(s) | 38, 415, 443 |
| BstACI | GRCGYC | 1 cut(s) | 221 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 790, 1373 |
| BstBAI | YACGTR | 1 cut(s) | 1618 |
| BstBI | TTCGAA | 1 cut(s) | 1528 |
| BstC8I | GCNNGC | 2 cut(s) | 531, 1093 |
| BstDEI | CTNAG | 9 cut(s) | 281, 332, 371, 696, 708, 717, 984, 1059, 1317 |
| BstDSI | CCRYGG | 2 cut(s) | 138, 153 |
| BstF5I | GGATG | 4 cut(s) | 882, 895, 997, 1609 |
| BstFNI | CGCG | 1 cut(s) | 208 |
| BstH2I | RGCGCY | 2 cut(s) | 12, 224 |
| BstHHI | GCGC | 2 cut(s) | 11, 223 |
| BstKTI | GATC | 1 cut(s) | 1048 |
| BstMAI | GTCTC | 4 cut(s) | 817, 1458, 1543, 1640 |
| BstMBI | GATC | 1 cut(s) | 1045 |
| BstNI | CCWGG | 2 cut(s) | 307, 320 |
| BstNSI | RCATGY | 3 cut(s) | 301, 1008, 1567 |
| BstSCI | CCNGG | 4 cut(s) | 305, 318, 549, 621 |
| BstSLI | GKGCMC | 2 cut(s) | 498, 1369 |
| BstUI | CGCG | 1 cut(s) | 208 |
| BstV1I | GCAGC | 4 cut(s) | 71, 508, 548, 1405 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1659 |
| Bsu15I | ATCGAT | 1 cut(s) | 1038 |
| BsuRI | GGCC | 7 cut(s) | 315, 350, 506, 560, 621, 1020, 1311 |
| BsuTUI | ATCGAT | 1 cut(s) | 1038 |
| BtgI | CCRYGG | 2 cut(s) | 138, 153 |
| BtgZI | GCGATG | 1 cut(s) | 688 |
| BtsCI | GGATG | 4 cut(s) | 882, 895, 997, 1609 |
| BtsI | GCAGTG | 1 cut(s) | 1664 |
| BtsIMutI | CAGTG | 3 cut(s) | 224, 523, 1664 |
| BveI | ACCTGC | 1 cut(s) | 799 |
| Cac8I | GCNNGC | 2 cut(s) | 531, 1093 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1663 |
| CfoI | GCGC | 2 cut(s) | 11, 223 |
| Cfr10I | RCCGGY | 2 cut(s) | 786, 1239 |
| Cfr13I | GGNCC | 6 cut(s) | 313, 547, 612, 620, 1151, 1310 |
| ClaI | ATCGAT | 1 cut(s) | 1038 |
| CsiI | ACCWGGT | 1 cut(s) | 318 |
| Csp6I | GTAC | 3 cut(s) | 96, 278, 1405 |
| CspAI | ACCGGT | 2 cut(s) | 786, 1239 |
| CviAII | CATG | 8 cut(s) | 139, 154, 298, 685, 938, 1005, 1148, 1564 |
| CviQI | GTAC | 3 cut(s) | 96, 278, 1405 |
| DdeI | CTNAG | 9 cut(s) | 281, 332, 371, 696, 708, 717, 984, 1059, 1317 |
| DinI | GGCGCC | 1 cut(s) | 222 |
| DpnI | GATC | 1 cut(s) | 1047 |
| DpnII | GATC | 1 cut(s) | 1045 |
| EaeI | YGGCCR | 1 cut(s) | 1018 |
| Eam1104I | CTCTTC | 3 cut(s) | 38, 415, 443 |
| EarI | CTCTTC | 3 cut(s) | 38, 415, 443 |
| EciI | GGCGGA | 1 cut(s) | 588 |
| Eco130I | CCWWGG | 3 cut(s) | 138, 153, 1652 |
| Eco24I | GRGCYC | 2 cut(s) | 366, 1259 |
| Eco31I | GGTCTC | 3 cut(s) | 817, 1458, 1640 |
| Eco47I | GGWCC | 3 cut(s) | 547, 612, 1151 |
| Eco57I | CTGAAG | 1 cut(s) | 1124 |
| Eco72I | CACGTG | 1 cut(s) | 1618 |
| Eco88I | CYCGRG | 1 cut(s) | 1540 |
| EcoO109I | RGGNCCY | 2 cut(s) | 547, 612 |
| EcoRII | CCWGG | 2 cut(s) | 305, 318 |
| EcoT14I | CCWWGG | 3 cut(s) | 138, 153, 1652 |
| EcoT38I | GRGCYC | 2 cut(s) | 366, 1259 |
| EgeI | GGCGCC | 1 cut(s) | 222 |
| EheI | GGCGCC | 1 cut(s) | 222 |
| ErhI | CCWWGG | 3 cut(s) | 138, 153, 1652 |
| FaeI | CATG | 8 cut(s) | 142, 157, 301, 688, 941, 1008, 1151, 1567 |
| FaqI | GGGAC | 3 cut(s) | 1015, 1501, 1563 |
| FatI | CATG | 8 cut(s) | 138, 153, 297, 684, 937, 1004, 1147, 1563 |
| FauI | CCCGC | 2 cut(s) | 80, 375 |
| FblI | GTMKAC | 1 cut(s) | 821 |
| Fnu4HI | GCNGC | 8 cut(s) | 85, 522, 534, 537, 540, 864, 1018, 1419 |
| FokI | GGATG | 4 cut(s) | 889, 902, 1004, 1616 |
| FriOI | GRGCYC | 2 cut(s) | 366, 1259 |
| Fsp4HI | GCNGC | 8 cut(s) | 85, 522, 534, 537, 540, 864, 1018, 1419 |
| FspBI | CTAG | 4 cut(s) | 525, 753, 1092, 1484 |
| GlaI | GCGC | 2 cut(s) | 10, 222 |
| GluI | GCNGC | 8 cut(s) | 85, 522, 534, 537, 540, 864, 1018, 1419 |
| GsaI | CCCAGC | 1 cut(s) | 1222 |
| HaeII | RGCGCY | 2 cut(s) | 12, 224 |
| HaeIII | GGCC | 7 cut(s) | 315, 350, 506, 560, 621, 1020, 1311 |
| HapII | CCGG | 5 cut(s) | 269, 551, 623, 787, 1240 |
| HhaI | GCGC | 2 cut(s) | 11, 223 |
| Hin1I | GRCGYC | 1 cut(s) | 221 |
| Hin1II | CATG | 8 cut(s) | 142, 157, 301, 688, 941, 1008, 1151, 1567 |
| Hin6I | GCGC | 2 cut(s) | 9, 221 |
| HinP1I | GCGC | 2 cut(s) | 9, 221 |
| HincII | GTYRAC | 1 cut(s) | 822 |
| HindII | GTYRAC | 1 cut(s) | 822 |
| HindIII | AAGCTT | 1 cut(s) | 1025 |
| HinfI | GANTC | 9 cut(s) | 197, 263, 595, 692, 749, 818, 982, 1321, 1595 |
| HpaII | CCGG | 5 cut(s) | 269, 551, 623, 787, 1240 |
| HphI | GGTGA | 7 cut(s) | 192, 583, 773, 913, 1246, 1456, 1646 |
| Hpy166II | GTNNAC | 4 cut(s) | 513, 822, 1237, 1367 |
| Hpy188I | TCNGA | 8 cut(s) | 333, 748, 817, 856, 987, 1143, 1320, 1600 |
| Hpy188III | TCNNGA | 3 cut(s) | 112, 1540, 1592 |
| Hpy8I | GTNNAC | 4 cut(s) | 513, 822, 1237, 1367 |
| HpyAV | CCTTC | 7 cut(s) | 213, 577, 640, 892, 902, 1504, 1568 |
| HpyCH4IV | ACGT | 2 cut(s) | 509, 1617 |
| HpyCH4V | TGCA | 5 cut(s) | 87, 177, 379, 784, 1367 |
| HpyF3I | CTNAG | 9 cut(s) | 281, 332, 371, 696, 708, 717, 984, 1059, 1317 |
| HpySE526I | ACGT | 2 cut(s) | 509, 1617 |
| Hsp92I | GRCGYC | 1 cut(s) | 221 |
| Hsp92II | CATG | 8 cut(s) | 142, 157, 301, 688, 941, 1008, 1151, 1567 |
| HspAI | GCGC | 2 cut(s) | 9, 221 |
| KasI | GGCGCC | 1 cut(s) | 220 |
| Kzo9I | GATC | 1 cut(s) | 1045 |
| LguI | GCTCTTC | 1 cut(s) | 415 |
| LmnI | GCTCC | 3 cut(s) | 171, 369, 712 |
| Lsp1109I | GCAGC | 4 cut(s) | 71, 508, 548, 1405 |
| LweI | GCATC | 2 cut(s) | 667, 1150 |
| MabI | ACCWGGT | 1 cut(s) | 318 |
| MaeI | CTAG | 4 cut(s) | 525, 753, 1092, 1484 |
| MaeII | ACGT | 2 cut(s) | 509, 1617 |
| MaeIII | GTNAC | 4 cut(s) | 761, 1242, 1300, 1444 |
| MalI | GATC | 1 cut(s) | 1047 |
| MboI | GATC | 1 cut(s) | 1045 |
| MboII | GAAGA | 4 cut(s) | 25, 259, 402, 460 |
| MfeI | CAATTG | 1 cut(s) | 1581 |
| MhlI | GDGCHC | 5 cut(s) | 366, 410, 498, 1259, 1369 |
| Mly113I | GGCGCC | 1 cut(s) | 221 |
| MlyI | GAGTC | 3 cut(s) | 827, 976, 1604 |
| MmeI | TCCRAC | 5 cut(s) | 258, 834, 1331, 1501, 1578 |
| MseI | TTAA | 3 cut(s) | 734, 1107, 1425 |
| MslI | CAYNNNNRTG | 1 cut(s) | 387 |
| MspA1I | CMGCKG | 1 cut(s) | 539 |
| MspI | CCGG | 5 cut(s) | 269, 551, 623, 787, 1240 |
| MspR9I | CCNGG | 4 cut(s) | 307, 320, 551, 623 |
| MunI | CAATTG | 1 cut(s) | 1581 |
| MvaI | CCWGG | 2 cut(s) | 307, 320 |
| MvnI | CGCG | 1 cut(s) | 208 |
| NarI | GGCGCC | 1 cut(s) | 221 |
| NciI | CCSGG | 2 cut(s) | 551, 623 |
| NcoI | CCATGG | 2 cut(s) | 138, 153 |
| NdeII | GATC | 1 cut(s) | 1045 |
| NheI | GCTAGC | 1 cut(s) | 1091 |
| NlaIII | CATG | 8 cut(s) | 142, 157, 301, 688, 941, 1008, 1151, 1567 |
| NlaIV | GGNNCC | 6 cut(s) | 167, 222, 365, 549, 714, 1177 |
| NmuCI | GTSAC | 2 cut(s) | 761, 1444 |
| NspI | RCATGY | 3 cut(s) | 301, 1008, 1567 |
| NspV | TTCGAA | 1 cut(s) | 1528 |
| PaeR7I | CTCGAG | 1 cut(s) | 1540 |
| PciI | ACATGT | 1 cut(s) | 297 |
| PciSI | GCTCTTC | 1 cut(s) | 415 |
| PfeI | GAWTC | 6 cut(s) | 197, 263, 595, 692, 749, 1321 |
| PinAI | ACCGGT | 2 cut(s) | 786, 1239 |
| PkrI | GCNGC | 8 cut(s) | 86, 523, 535, 538, 541, 865, 1019, 1420 |
| PleI | GAGTC | 3 cut(s) | 826, 976, 1603 |
| PluTI | GGCGCC | 1 cut(s) | 224 |
| PmaCI | CACGTG | 1 cut(s) | 1618 |
| PmlI | CACGTG | 1 cut(s) | 1618 |
| PpsI | GAGTC | 3 cut(s) | 826, 976, 1603 |
| Ppu21I | YACGTR | 1 cut(s) | 1618 |
| PpuMI | RGGWCCY | 2 cut(s) | 547, 612 |
| PscI | ACATGT | 1 cut(s) | 297 |
| PsiI | TTATAA | 1 cut(s) | 387 |
| Psp5II | RGGWCCY | 2 cut(s) | 547, 612 |
| Psp6I | CCWGG | 2 cut(s) | 305, 318 |
| PspCI | CACGTG | 1 cut(s) | 1618 |
| PspFI | CCCAGC | 1 cut(s) | 1218 |
| PspGI | CCWGG | 2 cut(s) | 305, 318 |
| PspN4I | GGNNCC | 6 cut(s) | 167, 222, 365, 549, 714, 1177 |
| PspPI | GGNCC | 6 cut(s) | 313, 547, 612, 620, 1151, 1310 |
| PspPPI | RGGWCCY | 2 cut(s) | 547, 612 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1663 |
| RsaI | GTAC | 3 cut(s) | 97, 279, 1406 |
| RsaNI | GTAC | 3 cut(s) | 96, 278, 1405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 387 |
| SalI | GTCGAC | 1 cut(s) | 820 |
| SapI | GCTCTTC | 1 cut(s) | 415 |
| SaqAI | TTAA | 3 cut(s) | 734, 1107, 1425 |
| SatI | GCNGC | 8 cut(s) | 85, 522, 534, 537, 540, 864, 1018, 1419 |
| Sau3AI | GATC | 1 cut(s) | 1045 |
| Sau96I | GGNCC | 6 cut(s) | 313, 547, 612, 620, 1151, 1310 |
| SchI | GAGTC | 3 cut(s) | 827, 976, 1604 |
| ScrFI | CCNGG | 4 cut(s) | 307, 320, 551, 623 |
| SduI | GDGCHC | 5 cut(s) | 366, 410, 498, 1259, 1369 |
| SexAI | ACCWGGT | 1 cut(s) | 318 |
| SfaNI | GCATC | 2 cut(s) | 667, 1150 |
| SfoI | GGCGCC | 1 cut(s) | 222 |
| Sfr274I | CTCGAG | 1 cut(s) | 1540 |
| SfuI | TTCGAA | 1 cut(s) | 1528 |
| SinI | GGWCC | 3 cut(s) | 547, 612, 1151 |
| SlaI | CTCGAG | 1 cut(s) | 1540 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 387 |
| SmlI | CTYRAG | 1 cut(s) | 1540 |
| SmoI | CTYRAG | 1 cut(s) | 1540 |
| SsiI | CCGC | 9 cut(s) | 73, 368, 533, 539, 599, 793, 863, 1017, 1609 |
| SspDI | GGCGCC | 1 cut(s) | 220 |
| SspMI | CTAG | 4 cut(s) | 525, 753, 1092, 1484 |
| StyD4I | CCNGG | 4 cut(s) | 305, 318, 549, 621 |
| StyI | CCWWGG | 3 cut(s) | 138, 153, 1652 |
| TaiI | ACGT | 2 cut(s) | 512, 1620 |
| TaqI | TCGA | 6 cut(s) | 294, 324, 821, 1038, 1528, 1541 |
| TauI | GCSGC | 4 cut(s) | 536, 542, 866, 1020 |
| TfiI | GAWTC | 6 cut(s) | 197, 263, 595, 692, 749, 1321 |
| Tru1I | TTAA | 3 cut(s) | 734, 1107, 1425 |
| Tru9I | TTAA | 3 cut(s) | 734, 1107, 1425 |
| TscAI | CASTG | 3 cut(s) | 231, 523, 1664 |
| TseFI | GTSAC | 2 cut(s) | 761, 1444 |
| TseI | GCWGC | 4 cut(s) | 84, 521, 536, 1418 |
| Tsp45I | GTSAC | 2 cut(s) | 761, 1444 |
| TspDTI | ATGAA | 5 cut(s) | 34, 554, 596, 684, 1008 |
| TspGWI | ACGGA | 1 cut(s) | 790 |
| TspRI | CASTG | 3 cut(s) | 231, 523, 1664 |
| VneI | GTGCAC | 1 cut(s) | 1365 |
| VpaK11BI | GGWCC | 3 cut(s) | 547, 612, 1151 |
| XapI | RAATTY | 1 cut(s) | 1063 |
| XceI | RCATGY | 3 cut(s) | 301, 1008, 1567 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1438 |
| XhoI | CTCGAG | 1 cut(s) | 1540 |
| XmiI | GTMKAC | 1 cut(s) | 821 |
| XspI | CTAG | 4 cut(s) | 525, 753, 1092, 1484 |