Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014152

Physical Location & Seq

Genomic Coordinates Reverse (-)

58629651 .. 58632669

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGTTACACGGCGGAGCCGCCGTCACAAAAACCTTCGCCTTCTTCATCAAAATCCCACTCCCCTTACTCTCCCGCCCTTCCCGCCGCGTTTTCCGGCCAATTCTCCACTACCCAAAACCCAAACCGACCCCAATCCCCACTTACAGTTTCTCCATGAATCAAAGACTCAACCTTTGCACTCTGGCCCACTCTAAAGACCGCTCGCCTGCTCCGGCGCCGCCGCGGCTTTCCAACAAGGCCCTGAAGAAAGCGCGGCGGGAGTCGCCGGAGGCGGTGCTGAAGAAAAACCTGGACATGTGTTCCCGCCACGGCCAAGTCGTCGAGGCTCTGAGGCTTTACGACGAGGCCAGGAGTAATGGGGTTCCGCTCAGCCTGCACCATTACAATATGTTGTTGTATTTGTGTTCCTCTGATGGTGAAGAAGCTGACGTGGGTTTGAGTAGAGGGTTCGAGATTTTCCGGCAGATGGTGGAGGATAAGGTGGTGCCGAATGAGGCCACGTTTACCAATGCGGCCAGGCTGTCGGCGGCGGCGGCGGACCCGGAAATGGCGTTTAGTTTGGTGAAGCAGATGAAGGGGTTTGGGATTCCGCCCAAGTTGAGGTCTTATGGGCCGGCATTGTTTGGTTTTTGTAAGAAGGGGGAGGCTGAGAGGGCTTATGAAGTTGATGCACACATGGTGGAGTCTGGGGTGGTGGCTGAGGAGCCGGAGATTTCGGCATTGTTGAAGATTAGTTTGGATTTGGGGAAGGGTGAGAAGGTGTATGAGATGATGCAGAGGTTGAGGAGTGGGGTGAGGCAGGTTGGGGAGAGTACTGCTGAAGTGGTTGAGGAGTGGTTTAAGTCTGAGGAGGCAGCGAGGGTTGGGGTGGAGAGGTGGGATGCGAAGAAGGTGAGGGAAGGGGTTGTGAGAGGAGGTGGAGGGTGGCATGGGCAAGGTTGGTTAGGGAGTGGGGAGTGGAAGGTGGTGAGGACTCAGATGGATGAAGCAGGGACGTGCTCTGCTTGCCGCCAGAAGCTTGTGTGTATTGATATTGATCCGAAAGAGACAGAGAACTTTGCTTTGTCTTTGAGCAAGCTGGCTAACCAAAGGGAGGTCAGGGCTGATTTTGCTCAGTTCCAGGAGTGGCTTAAGCGACATGGTCCATTTGATGCTATTATAGACGGTGCCAATGTGGGTCTCAGCAATCAACATAATTTCAGCTTTTCTCAGCTGAAAAATGTTGTGAATCGATTACAAAAAATGAGTCCAGCAAAGAGATTGCCACTTGTTATATTGCACAAAAGTCGTACGACCAGTGGCCCTGCTCAGAATCCTAGGAACAAGGCATTGTTAGAGACTTGGAAAGAGTCTGGGGCACTTTATGCTACTCCATCGGGTTCAAATGATGATTGGTACTGGTTGTATGCTGCTGTTAGTTGTAAGGGTTTACTGGTGACAAATGATGAGATGAGAGACCACTTGTTCCAACTTCTTGGAACTAACTTTTTCCCAAGATGGAAGGAAAAACATCAGGTTCGGGTGTCTGTCTCGAGGCCTGGACTAAATCTTCACATGCCACCTCCTTATTCAATTGTAATTCAGGAGTCGGAGAACGGGCGTTGGCACGTGCCAACCACCACAGGTGATGACATTGAGACCCCAAGGCAGTGGTTGTGTGCCACCAGAGCCAGGGATACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

561

Amino Acids

62.93

Weight (kDa)

9.29

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	82 - 286	2.4e-74	Pentacotripeptide-repeat region of PRORP
PRORP	PF16953	327 - 553	6.5e-74	Protein-only RNase P
RNase_Zc3h12a	PF11977	386 - 489	9.2e-07	Zc3h12a-like Ribonuclease NYN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32230 AT2G32230
fragaria_vesca	FvH4_4g29971
malus_domestica	MD13G1062300.v1.1 MD16G1060600.v1.1
prunus_persica	Prupe.1G287700_v2.0.a1
pyrus_communis	pycom16g05280
rosa_chinensis	RchiOBHm_Chr4g0438251
rosa_laevigata	RLG00000006377
rosa_multiflora	Rmu_sc0011129.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379340
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359400 Rh4BG370200 Rh4DG365300
rosa_wichuraiana	Rw0G006400 Rw0G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	790
AccB1I	GGYRCC	3 cut(s)	214, 484, 1166
AccBSI	CCGCTC	2 cut(s)	201, 367
AccII	CGCG	3 cut(s)	87, 223, 253
AclWI	GGATC	1 cut(s)	1031
AcoI	YGGCCR	3 cut(s)	95, 310, 513
AcuI	CTGAAG	3 cut(s)	263, 299, 840
AcvI	CACGTG	1 cut(s)	1609
AcyI	GRCGYC	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	679
AfaI	GTAC	3 cut(s)	814, 1291, 1397
AfiI	CCNNNNNNNGG	5 cut(s)	466, 547, 600, 1093, 1671
AflII	CTTAAG	1 cut(s)	1130
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	727, 1383, 1572
AjiI	CACGTC	2 cut(s)	430, 996
AjnI	CCWGG	6 cut(s)	288, 347, 515, 1119, 1537, 1670
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	425, 1018, 1078, 1203, 1213
AluI	AGCT	5 cut(s)	425, 1018, 1078, 1203, 1213
Alw21I	GWGCWC	1 cut(s)	1001
Alw26I	GTCTC	6 cut(s)	1040, 1184, 1331, 1449, 1534, 1631
AlwI	GGATC	1 cut(s)	1031
Ama87I	CYCGRG	1 cut(s)	1531
ApeKI	GCWGC	2 cut(s)	854, 1409
ArsI	GACNNNNNNTTYG	4 cut(s)	156, 188, 1231, 1263
AspA2I	CCTAGG	1 cut(s)	1316
AspLEI	GCGC	2 cut(s)	217, 253
AspS9I	GGNCC	6 cut(s)	184, 238, 538, 611, 1142, 1301
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	8 cut(s)	428, 574, 764, 805, 904, 979, 1447, 1637
AvaI	CYCGRG	1 cut(s)	1531
AvaII	GGWCC	2 cut(s)	538, 1142
AvrII	CCTAGG	1 cut(s)	1316
BaeGI	GKGCMC	1 cut(s)	1360
BanI	GGYRCC	3 cut(s)	214, 484, 1166
BbrPI	CACGTG	1 cut(s)	1609
Bbv12I	GWGCWC	1 cut(s)	1001
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	866, 1396
BccI	CCATC	5 cut(s)	407, 460, 973, 1381, 1491
BceAI	ACGGC	3 cut(s)	5, 25, 325
BcgI	CGANNNNNNTGC	2 cut(s)	1268, 1302
BciT130I	CCWGG	6 cut(s)	290, 349, 517, 1121, 1539, 1672
BciVI	GTATCC	1 cut(s)	1669
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	6 cut(s)	1040, 1184, 1331, 1449, 1534, 1631
BfaI	CTAG	1 cut(s)	1317
BfoI	RGCGCY	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	1130
BfuAI	ACCTGC	1 cut(s)	790
BfuI	GTATCC	1 cut(s)	1669
BglI	GCCNNNNNGGC	1 cut(s)	223
BlnI	CCTAGG	1 cut(s)	1316
BlpI	GCTNAGC	1 cut(s)	368
BmcAI	AGTACT	1 cut(s)	814
Bme1390I	CCNGG	7 cut(s)	290, 349, 517, 542, 1121, 1539, 1672
Bme18I	GGWCC	2 cut(s)	538, 1142
BmeT110I	CYCGRG	1 cut(s)	1531
BmgBI	CACGTC	2 cut(s)	430, 996
BmgT120I	GGNCC	6 cut(s)	184, 238, 538, 611, 1142, 1301
BmiI	GGNNCC	7 cut(s)	16, 216, 363, 486, 540, 705, 1168
BmrFI	CCNGG	7 cut(s)	290, 349, 517, 542, 1121, 1539, 1672
BmsI	GCATC	4 cut(s)	658, 762, 871, 1141
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	1231
BsaAI	YACGTR	1 cut(s)	1609
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	3 cut(s)	1184, 1449, 1631
BsaJI	CCNNGG	5 cut(s)	221, 307, 1316, 1643, 1671
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 134, 164
Bsc4I	CCNNNNNNNGG	5 cut(s)	466, 547, 600, 1093, 1671
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	1296, 1403, 1437
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	6 cut(s)	290, 349, 517, 1121, 1539, 1672
BseCI	ATCGAT	1 cut(s)	1231
BseDI	CCNNGG	5 cut(s)	221, 307, 1316, 1643, 1671
BseGI	GGATG	2 cut(s)	886, 988
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	5 cut(s)	466, 547, 600, 1093, 1671
BseNI	ACTGG	3 cut(s)	1296, 1403, 1437
BseRI	GAGGAG	5 cut(s)	716, 799, 845, 863, 927
BseSI	GKGCMC	1 cut(s)	1360
BseXI	GCAGC	2 cut(s)	866, 1396
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	3 cut(s)	87, 223, 253
BshNI	GGYRCC	3 cut(s)	214, 484, 1166
BshVI	ATCGAT	1 cut(s)	1231
BsiHKAI	GWGCWC	1 cut(s)	1001
BsiHKCI	CYCGRG	1 cut(s)	1531
BsiSI	CCGG	7 cut(s)	94, 212, 266, 460, 542, 614, 707
BsiWI	CGTACG	1 cut(s)	1289
BslFI	GGGAC	1 cut(s)	1006
BslI	CCNNNNNNNGG	5 cut(s)	466, 547, 600, 1093, 1671
BsmAI	GTCTC	6 cut(s)	1040, 1184, 1331, 1449, 1534, 1631
BsmFI	GGGAC	1 cut(s)	1006
Bso31I	GGTCTC	3 cut(s)	1184, 1449, 1631
BsoBI	CYCGRG	1 cut(s)	1531
Bsp1286I	GDGCHC	2 cut(s)	1001, 1360
Bsp143I	GATC	1 cut(s)	1036
Bsp1720I	GCTNAGC	1 cut(s)	368
BspDI	ATCGAT	1 cut(s)	1231
BspFNI	CGCG	3 cut(s)	87, 223, 253
BspLI	GGNNCC	7 cut(s)	16, 216, 363, 486, 540, 705, 1168
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	1 cut(s)	1031
BspT107I	GGYRCC	3 cut(s)	214, 484, 1166
BspTI	CTTAAG	1 cut(s)	1130
BspTNI	GGTCTC	3 cut(s)	1184, 1449, 1631
BsrBI	CCGCTC	2 cut(s)	201, 367
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	3 cut(s)	1296, 1403, 1437
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	5 cut(s)	221, 307, 1316, 1643, 1671
BssMI	GATC	1 cut(s)	1036
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	1316, 1643
Bst2UI	CCWGG	6 cut(s)	290, 349, 517, 1121, 1539, 1672
Bst4CI	ACNGT	2 cut(s)	146, 1166
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	1130
BstAPI	GCANNNNNTGC	1 cut(s)	1364
BstBAI	YACGTR	1 cut(s)	1609
BstC8I	GCNNGC	7 cut(s)	203, 207, 374, 615, 1006, 1076, 1080
BstDSI	CCRYGG	2 cut(s)	221, 307
BstF5I	GGATG	2 cut(s)	886, 988
BstFNI	CGCG	3 cut(s)	87, 223, 253
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 253
BstKTI	GATC	1 cut(s)	1039
BstMAI	GTCTC	6 cut(s)	1040, 1184, 1331, 1449, 1534, 1631
BstMBI	GATC	1 cut(s)	1036
BstNI	CCWGG	6 cut(s)	290, 349, 517, 1121, 1539, 1672
BstNSI	RCATGY	2 cut(s)	298, 1558
BstSCI	CCNGG	7 cut(s)	288, 347, 515, 540, 1119, 1537, 1670
BstSLI	GKGCMC	1 cut(s)	1360
BstUI	CGCG	3 cut(s)	87, 223, 253
BstV1I	GCAGC	2 cut(s)	866, 1396
BstXI	CCANNNNNNTGG	2 cut(s)	1475, 1650
Bsu15I	ATCGAT	1 cut(s)	1231
BsuI	GTATCC	1 cut(s)	1669
BsuTUI	ATCGAT	1 cut(s)	1231
BtgI	CCRYGG	2 cut(s)	221, 307
BtrI	CACGTC	2 cut(s)	430, 996
BtsCI	GGATG	2 cut(s)	886, 988
BtsI	GCAGTG	1 cut(s)	1655
BtsIMutI	CAGTG	2 cut(s)	1303, 1655
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	7 cut(s)	203, 207, 374, 615, 1006, 1076, 1080
CfoI	GCGC	2 cut(s)	217, 253
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	6 cut(s)	184, 238, 538, 611, 1142, 1301
Cfr42I	CCGCGG	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	1231
Csp6I	GTAC	3 cut(s)	813, 1290, 1396
CviAII	CATG	6 cut(s)	154, 295, 676, 929, 1139, 1555
CviQI	GTAC	3 cut(s)	813, 1290, 1396
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	1 cut(s)	1038
DpnII	GATC	1 cut(s)	1036
DraIII	CACNNNGTG	1 cut(s)	679
EaeI	YGGCCR	3 cut(s)	95, 310, 513
EciI	GGCGGA	3 cut(s)	27, 551, 579
Eco130I	CCWWGG	2 cut(s)	1316, 1643
Eco147I	AGGCCT	1 cut(s)	1537
Eco31I	GGTCTC	3 cut(s)	1184, 1449, 1631
Eco47I	GGWCC	2 cut(s)	538, 1142
Eco57I	CTGAAG	3 cut(s)	263, 299, 840
Eco72I	CACGTG	1 cut(s)	1609
Eco88I	CYCGRG	1 cut(s)	1531
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	6 cut(s)	288, 347, 515, 1119, 1537, 1670
EcoT14I	CCWWGG	2 cut(s)	1316, 1643
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	1316, 1643
FaeI	CATG	6 cut(s)	157, 298, 679, 932, 1142, 1558
FaqI	GGGAC	1 cut(s)	1006
FatI	CATG	6 cut(s)	153, 294, 675, 928, 1138, 1554
FauI	CCCGC	4 cut(s)	80, 89, 249, 311
FokI	GGATG	2 cut(s)	893, 995
FspBI	CTAG	1 cut(s)	1317
GlaI	GCGC	2 cut(s)	216, 252
HaeII	RGCGCY	1 cut(s)	218
HapII	CCGG	7 cut(s)	94, 212, 266, 460, 542, 614, 707
HhaI	GCGC	2 cut(s)	217, 253
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	6 cut(s)	157, 298, 679, 932, 1142, 1558
Hin6I	GCGC	2 cut(s)	215, 251
HinP1I	GCGC	2 cut(s)	215, 251
HindIII	AAGCTT	1 cut(s)	1016
HpaII	CCGG	7 cut(s)	94, 212, 266, 460, 542, 614, 707
HphI	GGTGA	8 cut(s)	428, 574, 764, 805, 904, 979, 1447, 1637
Hpy166II	GTNNAC	2 cut(s)	504, 1430
Hpy188I	TCNGA	7 cut(s)	330, 412, 847, 978, 1041, 1311, 1591
Hpy188III	TCNNGA	3 cut(s)	451, 1531, 1583
Hpy8I	GTNNAC	2 cut(s)	504, 1430
Hpy99I	CGWCG	2 cut(s)	323, 344
HpyCH4III	ACNGT	2 cut(s)	146, 1166
HpyCH4IV	ACGT	4 cut(s)	429, 500, 995, 1608
HpyCH4V	TGCA	5 cut(s)	177, 376, 671, 775, 1279
HpySE526I	ACGT	4 cut(s)	429, 500, 995, 1608
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	6 cut(s)	157, 298, 679, 932, 1142, 1558
HspAI	GCGC	2 cut(s)	215, 251
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	613
KroNI	GCCGGC	1 cut(s)	615
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	1036
LmnI	GCTCC	3 cut(s)	14, 214, 703
Lsp1109I	GCAGC	2 cut(s)	866, 1396
LweI	GCATC	4 cut(s)	658, 762, 871, 1141
MaeI	CTAG	1 cut(s)	1317
MaeII	ACGT	4 cut(s)	429, 500, 995, 1608
MaeIII	GTNAC	3 cut(s)	3, 22, 1435
MalI	GATC	1 cut(s)	1038
MbiI	CCGCTC	2 cut(s)	201, 367
MboI	GATC	1 cut(s)	1036
MboII	GAAGA	7 cut(s)	34, 256, 292, 431, 739, 898, 1541
MfeI	CAATTG	1 cut(s)	1572
MhlI	GDGCHC	2 cut(s)	1001, 1360
MluCI	AATT	4 cut(s)	99, 1195, 1572, 1578
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	7 cut(s)	159, 269, 692, 967, 1255, 1358, 1595
MmeI	TCCRAC	3 cut(s)	255, 1492, 1569
MroNI	GCCGGC	1 cut(s)	613
MseI	TTAA	2 cut(s)	840, 1131
MspA1I	CMGCKG	2 cut(s)	223, 1213
MspCI	CTTAAG	1 cut(s)	1130
MspI	CCGG	7 cut(s)	94, 212, 266, 460, 542, 614, 707
MspR9I	CCNGG	7 cut(s)	290, 349, 517, 542, 1121, 1539, 1672
MunI	CAATTG	1 cut(s)	1572
MvaI	CCWGG	6 cut(s)	290, 349, 517, 1121, 1539, 1672
MvnI	CGCG	3 cut(s)	87, 223, 253
NaeI	GCCGGC	1 cut(s)	615
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	1 cut(s)	1036
NgoMIV	GCCGGC	1 cut(s)	613
NlaIII	CATG	6 cut(s)	157, 298, 679, 932, 1142, 1558
NlaIV	GGNNCC	7 cut(s)	16, 216, 363, 486, 540, 705, 1168
NmuCI	GTSAC	2 cut(s)	22, 1435
NspI	RCATGY	2 cut(s)	298, 1558
PaeR7I	CTCGAG	1 cut(s)	1531
PceI	AGGCCT	1 cut(s)	1537
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	157, 586, 1228, 1312
Pfl23II	CGTACG	1 cut(s)	1289
PflFI	GACNNNGTC	1 cut(s)	1140
PfoI	TCCNGGA	1 cut(s)	1119
PleI	GAGTC	7 cut(s)	159, 268, 691, 967, 1254, 1357, 1594
PluTI	GGCGCC	1 cut(s)	218
PmaCI	CACGTG	1 cut(s)	1609
PmlI	CACGTG	1 cut(s)	1609
PpsI	GAGTC	7 cut(s)	159, 268, 691, 967, 1254, 1357, 1594
Ppu21I	YACGTR	1 cut(s)	1609
PscI	ACATGT	1 cut(s)	294
Psp6I	CCWGG	6 cut(s)	288, 347, 515, 1119, 1537, 1670
PspCI	CACGTG	1 cut(s)	1609
PspGI	CCWGG	6 cut(s)	288, 347, 515, 1119, 1537, 1670
PspLI	CGTACG	1 cut(s)	1289
PspN4I	GGNNCC	7 cut(s)	16, 216, 363, 486, 540, 705, 1168
PspPI	GGNCC	6 cut(s)	184, 238, 538, 611, 1142, 1301
PsyI	GACNNNGTC	1 cut(s)	1140
PvuII	CAGCTG	1 cut(s)	1213
RsaI	GTAC	3 cut(s)	814, 1291, 1397
RsaNI	GTAC	3 cut(s)	813, 1290, 1396
SacII	CCGCGG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	840, 1131
Sau3AI	GATC	1 cut(s)	1036
Sau96I	GGNCC	6 cut(s)	184, 238, 538, 611, 1142, 1301
ScaI	AGTACT	1 cut(s)	814
SchI	GAGTC	7 cut(s)	159, 269, 692, 967, 1255, 1358, 1595
ScrFI	CCNGG	7 cut(s)	290, 349, 517, 542, 1121, 1539, 1672
SduI	GDGCHC	2 cut(s)	1001, 1360
SfaNI	GCATC	4 cut(s)	658, 762, 871, 1141
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	1531
Sfr303I	CCGCGG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	224
SinI	GGWCC	2 cut(s)	538, 1142
SlaI	CTCGAG	1 cut(s)	1531
SmlI	CTYRAG	2 cut(s)	1130, 1531
SmoI	CTYRAG	2 cut(s)	1130, 1531
Sse9I	AATT	4 cut(s)	99, 1195, 1572, 1578
SseBI	AGGCCT	1 cut(s)	1537
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	1317
StuI	AGGCCT	1 cut(s)	1537
StyD4I	CCNGG	7 cut(s)	288, 347, 515, 540, 1119, 1537, 1670
StyI	CCWWGG	2 cut(s)	1316, 1643
TaaI	ACNGT	2 cut(s)	146, 1166
TaiI	ACGT	4 cut(s)	432, 503, 998, 1611
TaqI	TCGA	4 cut(s)	321, 450, 1231, 1532
TasI	AATT	4 cut(s)	99, 1195, 1572, 1578
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	4 cut(s)	157, 586, 1228, 1312
Tru1I	TTAA	2 cut(s)	840, 1131
Tru9I	TTAA	2 cut(s)	840, 1131
TscAI	CASTG	2 cut(s)	1303, 1655
TseFI	GTSAC	2 cut(s)	22, 1435
TseI	GCWGC	2 cut(s)	854, 1409
Tsp45I	GTSAC	2 cut(s)	22, 1435
TspDTI	ATGAA	5 cut(s)	34, 170, 587, 675, 999
TspRI	CASTG	2 cut(s)	1303, 1655
Tth111I	GACNNNGTC	1 cut(s)	1140
Vha464I	CTTAAG	1 cut(s)	1130
VpaK11BI	GGWCC	2 cut(s)	538, 1142
XceI	RCATGY	2 cut(s)	298, 1558
XhoI	CTCGAG	1 cut(s)	1531
XmaJI	CCTAGG	1 cut(s)	1316
XspI	CTAG	1 cut(s)	1317
ZrmI	AGTACT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.