Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011129.1

Orthogroup ID

OG0014152

Physical Location & Seq

Genomic Coordinates Forward (+)

28991 .. 31107

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011129.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgttacacggtggagccgccttcacaaaaaccttcgccttcttcatcaaaatcccactcccctttctctcccgccctttccgccgcgttttccggccaattctccactacccaaaacccaaactgaccctaatccccacttacagtttctcgatgaaccaaagactcaacctttgcactctggcccactctaaagaccgtccgcctgctccggcgccgccgccgcggctttccaacaaggcccttaagaaagcgcagcgggagtcgccggaggcggtgctgaagaaaaacctggacatgtgttcccgccacggccaagtcgtcgaggctctgaggctttacgacgaggccaggagtaatggggttcggctcagcctgcaccattacaatgtgttgttgtatttgtgttcctctgatggtgaagatgctgacgtgggtttgagtagagggttcgagattttccggcagatggtggaggataaggtggtgccgaatgaggccacgtttaccattgcggccaggctgtcggcggcggcggcggacccggaaatggcgtttagtttggtgaagcagatgaaggggtttgggattccgccgaagttgaggtcttatgggccggcattgtttggtttttgtaagaagggggaggctgagagggcttatgaagttgatgcacacatggtggagtctggggtggtggctgaggagccggagatttcggcattgttgaagattagttcggatttggggaagggtgagaaggtgtatgagatgatgcagaggttgaggagtggggtgcggcaggttggggagagtactgctgaggtggttgaggagtggtttaagtctgaggaggcggcgagagttggggtggagaggtgggatgcgaagaaggtgagggaaggggttgtgagaggaggtggagggtggcatgggcaaggttggttagggagtggggagtggaaggtggtgaggactcagatggatgaagcagggacgtgctctgcttgccgccagaagcttgtgtgtattgatattgatccgaaagagacagagaactttgctttgtctttgagcaagctggctaaccaaagggaggtcagggctgattttgctcagttccaggagtggcttaagcgacatggtccatttgatgctattatagacggtgccaatgtgggtctcacgaatcaacagaatttcagcttttctcagctgaaaaatgttgtgaatcaattacaaaaaatgagtccagcaaagagattgccacttgttatattgcacaaaagtcgtacgaccagtggccctgctcagaatcctaggaacaaggcattgttagagacttggaaaaagtccggggcactttatgctactccatccggttcaaatgatgattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

466

Amino Acids

51.96

Weight (kDa)

9.36

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32230 AT2G32230
fragaria_vesca	FvH4_4g29971
malus_domestica	MD13G1062300.v1.1 MD16G1060600.v1.1
prunus_persica	Prupe.1G287700_v2.0.a1
pyrus_communis	pycom16g05280
rosa_chinensis	RchiOBHm_Chr4g0438251
rosa_laevigata	RLG00000006377
rosa_multiflora	Rmu_sc0011129.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379340
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359400 Rh4BG370200 Rh4DG365300
rosa_wichuraiana	Rw0G006400 Rw0G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
AccB1I	GGYRCC	3 cut(s)	214, 487, 1169
AccII	CGCG	2 cut(s)	87, 226
AclWI	GGATC	1 cut(s)	1034
AcoI	YGGCCR	3 cut(s)	95, 313, 516
AcsI	RAATTY	1 cut(s)	1198
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	682
AfaI	GTAC	2 cut(s)	817, 1294
AfiI	CCNNNNNNNGG	3 cut(s)	469, 550, 1096
AflII	CTTAAG	2 cut(s)	245, 1133
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	730, 1386
AjiI	CACGTC	2 cut(s)	433, 999
AjnI	CCWGG	4 cut(s)	291, 350, 518, 1122
AluBI	AGCT	4 cut(s)	1021, 1081, 1206, 1216
AluI	AGCT	4 cut(s)	1021, 1081, 1206, 1216
Alw21I	GWGCWC	1 cut(s)	1004
Alw26I	GTCTC	3 cut(s)	1043, 1187, 1334
AlwI	GGATC	1 cut(s)	1034
AoxI	GGCC	9 cut(s)	95, 183, 240, 313, 348, 498, 516, 614, 1303
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	1198
ArsI	GACNNNNNNTTYG	6 cut(s)	156, 188, 590, 622, 1234, 1266
AspA2I	CCTAGG	1 cut(s)	1319
AspLEI	GCGC	2 cut(s)	217, 256
AspS9I	GGNCC	6 cut(s)	184, 241, 541, 614, 1145, 1304
AsuC2I	CCSGG	2 cut(s)	545, 1357
AsuHPI	GGTGA	5 cut(s)	431, 577, 767, 907, 982
AvaII	GGWCC	2 cut(s)	541, 1145
AvrII	CCTAGG	1 cut(s)	1319
BaeGI	GKGCMC	1 cut(s)	1363
BanI	GGYRCC	3 cut(s)	214, 487, 1169
Bbv12I	GWGCWC	1 cut(s)	1004
BbvCI	CCTCAGC	2 cut(s)	702, 822
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	4 cut(s)	410, 463, 976, 1384
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	1271, 1305
BciT130I	CCWGG	4 cut(s)	293, 352, 520, 1124
BcnI	CCSGG	2 cut(s)	545, 1357
BcoDI	GTCTC	3 cut(s)	1043, 1187, 1334
BfaI	CTAG	1 cut(s)	1320
BfoI	RGCGCY	1 cut(s)	218
BfrI	CTTAAG	2 cut(s)	245, 1133
BfuAI	ACCTGC	1 cut(s)	793
BglI	GCCNNNNNGGC	1 cut(s)	226
BlnI	CCTAGG	1 cut(s)	1319
BlpI	GCTNAGC	1 cut(s)	371
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	6 cut(s)	293, 352, 520, 545, 1124, 1357
Bme18I	GGWCC	2 cut(s)	541, 1145
BmgBI	CACGTC	2 cut(s)	433, 999
BmgT120I	GGNCC	6 cut(s)	184, 241, 541, 614, 1145, 1304
BmiI	GGNNCC	6 cut(s)	16, 216, 489, 543, 708, 1171
BmrFI	CCNGG	6 cut(s)	293, 352, 520, 545, 1124, 1357
BmsI	GCATC	5 cut(s)	415, 661, 765, 874, 1144
Bpu10I	CCTNAGC	2 cut(s)	702, 822
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	545, 1357
BsaBI	GATNNNNATC	1 cut(s)	1038
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	1187
BsaJI	CCNNGG	4 cut(s)	224, 310, 1319, 1356
BsaWI	WCCGGW	1 cut(s)	1379
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 550, 1096
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	1299
Bse3DI	GCAATG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	1038
BseBI	CCWGG	4 cut(s)	293, 352, 520, 1124
BseDI	CCNNGG	4 cut(s)	224, 310, 1319, 1356
BseGI	GGATG	3 cut(s)	889, 991, 1376
BseJI	GATNNNNATC	1 cut(s)	1038
BseLI	CCNNNNNNNGG	3 cut(s)	469, 550, 1096
BseMI	GCAATG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	1299
BseRI	GAGGAG	5 cut(s)	719, 802, 848, 866, 930
BseSI	GKGCMC	1 cut(s)	1363
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	87, 226
BshFI	GGCC	9 cut(s)	97, 185, 242, 315, 350, 500, 518, 616, 1305
BshNI	GGYRCC	3 cut(s)	214, 487, 1169
BsiHKAI	GWGCWC	1 cut(s)	1004
BsiSI	CCGG	9 cut(s)	94, 212, 269, 463, 545, 617, 710, 1356, 1380
BsiWI	CGTACG	1 cut(s)	1292
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	3 cut(s)	469, 550, 1096
BsmAI	GTCTC	3 cut(s)	1043, 1187, 1334
BsmFI	GGGAC	1 cut(s)	1009
BsnI	GGCC	9 cut(s)	97, 185, 242, 315, 350, 500, 518, 616, 1305
Bso31I	GGTCTC	1 cut(s)	1187
Bsp1286I	GDGCHC	2 cut(s)	1004, 1363
Bsp143I	GATC	1 cut(s)	1039
Bsp1720I	GCTNAGC	1 cut(s)	371
BspANI	GGCC	9 cut(s)	97, 185, 242, 315, 350, 500, 518, 616, 1305
BspFNI	CGCG	2 cut(s)	87, 226
BspLI	GGNNCC	6 cut(s)	16, 216, 489, 543, 708, 1171
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	1 cut(s)	1034
BspT107I	GGYRCC	3 cut(s)	214, 487, 1169
BspTI	CTTAAG	2 cut(s)	245, 1133
BspTNI	GGTCTC	1 cut(s)	1187
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	1299
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	4 cut(s)	224, 310, 1319, 1356
BssMI	GATC	1 cut(s)	1039
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	1319
Bst2UI	CCWGG	4 cut(s)	293, 352, 520, 1124
Bst4CI	ACNGT	4 cut(s)	11, 146, 200, 1169
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	2 cut(s)	245, 1133
BstAPI	GCANNNNNTGC	1 cut(s)	1367
BstC8I	GCNNGC	6 cut(s)	207, 377, 618, 1009, 1079, 1083
BstDSI	CCRYGG	2 cut(s)	224, 310
BstF5I	GGATG	3 cut(s)	889, 991, 1376
BstFNI	CGCG	2 cut(s)	87, 226
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 256
BstKTI	GATC	1 cut(s)	1042
BstMAI	GTCTC	3 cut(s)	1043, 1187, 1334
BstMBI	GATC	1 cut(s)	1039
BstNI	CCWGG	4 cut(s)	293, 352, 520, 1124
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	6 cut(s)	291, 350, 518, 543, 1122, 1355
BstSLI	GKGCMC	1 cut(s)	1363
BstUI	CGCG	2 cut(s)	87, 226
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	9 cut(s)	97, 185, 242, 315, 350, 500, 518, 616, 1305
BtgI	CCRYGG	2 cut(s)	224, 310
BtrI	CACGTC	2 cut(s)	433, 999
BtsCI	GGATG	3 cut(s)	889, 991, 1376
BtsIMutI	CAGTG	1 cut(s)	1306
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	6 cut(s)	207, 377, 618, 1009, 1079, 1083
CfoI	GCGC	2 cut(s)	217, 256
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	6 cut(s)	184, 241, 541, 614, 1145, 1304
Cfr42I	CCGCGG	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	816, 1293
CviAII	CATG	4 cut(s)	298, 679, 932, 1142
CviQI	GTAC	2 cut(s)	816, 1293
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	1 cut(s)	1041
DpnII	GATC	1 cut(s)	1039
DraIII	CACNNNGTG	1 cut(s)	682
EaeI	YGGCCR	3 cut(s)	95, 313, 516
EciI	GGCGGA	4 cut(s)	71, 192, 554, 582
Eco130I	CCWWGG	1 cut(s)	1319
Eco31I	GGTCTC	1 cut(s)	1187
Eco47I	GGWCC	2 cut(s)	541, 1145
Eco57I	CTGAAG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	4 cut(s)	291, 350, 518, 1122
EcoT14I	CCWWGG	1 cut(s)	1319
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	1319
FaeI	CATG	4 cut(s)	301, 682, 935, 1145
FaqI	GGGAC	1 cut(s)	1009
FatI	CATG	4 cut(s)	297, 678, 931, 1141
FauI	CCCGC	3 cut(s)	80, 252, 314
FokI	GGATG	3 cut(s)	896, 998, 1363
FspBI	CTAG	1 cut(s)	1320
GlaI	GCGC	2 cut(s)	216, 255
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	9 cut(s)	97, 185, 242, 315, 350, 500, 518, 616, 1305
HapII	CCGG	9 cut(s)	94, 212, 269, 463, 545, 617, 710, 1356, 1380
HhaI	GCGC	2 cut(s)	217, 256
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	301, 682, 935, 1145
Hin6I	GCGC	2 cut(s)	215, 254
HinP1I	GCGC	2 cut(s)	215, 254
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	9 cut(s)	165, 263, 589, 686, 976, 1189, 1231, 1249, 1315
HpaII	CCGG	9 cut(s)	94, 212, 269, 463, 545, 617, 710, 1356, 1380
HphI	GGTGA	5 cut(s)	431, 577, 767, 907, 982
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	7 cut(s)	333, 415, 742, 850, 981, 1044, 1314
Hpy188III	TCNNGA	3 cut(s)	151, 454, 1186
Hpy8I	GTNNAC	1 cut(s)	507
Hpy99I	CGWCG	2 cut(s)	326, 347
HpyCH4III	ACNGT	4 cut(s)	11, 146, 200, 1169
HpyCH4IV	ACGT	3 cut(s)	432, 503, 998
HpyCH4V	TGCA	5 cut(s)	177, 379, 674, 778, 1282
HpySE526I	ACGT	3 cut(s)	432, 503, 998
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	301, 682, 935, 1145
HspAI	GCGC	2 cut(s)	215, 254
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	616
KroNI	GCCGGC	1 cut(s)	618
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	1039
LmnI	GCTCC	3 cut(s)	14, 214, 706
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	5 cut(s)	415, 661, 765, 874, 1144
MaeI	CTAG	1 cut(s)	1320
MaeII	ACGT	3 cut(s)	432, 503, 998
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	1041
MboI	GATC	1 cut(s)	1039
MboII	GAAGA	5 cut(s)	34, 295, 434, 742, 901
MhlI	GDGCHC	2 cut(s)	1004, 1363
MluCI	AATT	3 cut(s)	99, 1198, 1235
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	5 cut(s)	159, 272, 695, 970, 1258
MmeI	TCCRAC	1 cut(s)	258
MroNI	GCCGGC	1 cut(s)	616
MseI	TTAA	3 cut(s)	246, 843, 1134
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	3 cut(s)	226, 259, 1216
MspCI	CTTAAG	2 cut(s)	245, 1133
MspI	CCGG	9 cut(s)	94, 212, 269, 463, 545, 617, 710, 1356, 1380
MspR9I	CCNGG	6 cut(s)	293, 352, 520, 545, 1124, 1357
MvaI	CCWGG	4 cut(s)	293, 352, 520, 1124
MvnI	CGCG	2 cut(s)	87, 226
NaeI	GCCGGC	1 cut(s)	618
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	2 cut(s)	545, 1357
NdeII	GATC	1 cut(s)	1039
NgoMIV	GCCGGC	1 cut(s)	616
NlaIII	CATG	4 cut(s)	301, 682, 935, 1145
NlaIV	GGNNCC	6 cut(s)	16, 216, 489, 543, 708, 1171
NspI	RCATGY	1 cut(s)	301
PciI	ACATGT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	618
PfeI	GAWTC	4 cut(s)	589, 1189, 1231, 1315
Pfl23II	CGTACG	1 cut(s)	1292
PflFI	GACNNNGTC	1 cut(s)	1143
PfoI	TCCNGGA	1 cut(s)	1122
PleI	GAGTC	5 cut(s)	159, 271, 694, 970, 1257
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	5 cut(s)	159, 271, 694, 970, 1257
PscI	ACATGT	1 cut(s)	297
Psp6I	CCWGG	4 cut(s)	291, 350, 518, 1122
PspGI	CCWGG	4 cut(s)	291, 350, 518, 1122
PspLI	CGTACG	1 cut(s)	1292
PspN4I	GGNNCC	6 cut(s)	16, 216, 489, 543, 708, 1171
PspPI	GGNCC	6 cut(s)	184, 241, 541, 614, 1145, 1304
PsyI	GACNNNGTC	1 cut(s)	1143
PvuII	CAGCTG	1 cut(s)	1216
RsaI	GTAC	2 cut(s)	817, 1294
RsaNI	GTAC	2 cut(s)	816, 1293
RseI	CAYNNNNRTG	1 cut(s)	387
SacII	CCGCGG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	246, 843, 1134
Sau3AI	GATC	1 cut(s)	1039
Sau96I	GGNCC	6 cut(s)	184, 241, 541, 614, 1145, 1304
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	5 cut(s)	159, 272, 695, 970, 1258
ScrFI	CCNGG	6 cut(s)	293, 352, 520, 545, 1124, 1357
SduI	GDGCHC	2 cut(s)	1004, 1363
SfaNI	GCATC	5 cut(s)	415, 661, 765, 874, 1144
SfoI	GGCGCC	1 cut(s)	216
Sfr303I	CCGCGG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	541, 1145
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	245, 1133
SmoI	CTYRAG	2 cut(s)	245, 1133
Sse9I	AATT	3 cut(s)	99, 1198, 1235
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	1320
StyD4I	CCNGG	6 cut(s)	291, 350, 518, 543, 1122, 1355
StyI	CCWWGG	1 cut(s)	1319
TaaI	ACNGT	4 cut(s)	11, 146, 200, 1169
TaiI	ACGT	3 cut(s)	435, 506, 1001
TaqI	TCGA	3 cut(s)	152, 324, 453
TasI	AATT	3 cut(s)	99, 1198, 1235
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	4 cut(s)	589, 1189, 1231, 1315
Tru1I	TTAA	3 cut(s)	246, 843, 1134
Tru9I	TTAA	3 cut(s)	246, 843, 1134
TscAI	CASTG	1 cut(s)	1306
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	5 cut(s)	34, 170, 590, 678, 1002
TspRI	CASTG	1 cut(s)	1306
Tth111I	GACNNNGTC	1 cut(s)	1143
Vha464I	CTTAAG	2 cut(s)	245, 1133
VpaK11BI	GGWCC	2 cut(s)	541, 1145
XapI	RAATTY	1 cut(s)	1198
XceI	RCATGY	1 cut(s)	301
XmaJI	CCTAGG	1 cut(s)	1319
XspI	CTAG	1 cut(s)	1320
ZrmI	AGTACT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.