AT2G33280

Integral membrane transporter family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009098
Physical Location & Seq
Forward (+)
14105896 .. 14108166
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33280.2

Sequence Viewer

Length: 1617 bp
ATGAACAATCCATTATTATCAATCTCAAACCCAGTAAAGTTCTTTAAACCACCAATTCCGTACAGAATAAGCTTAAACACCACCATTAACAAGAAACAGAAGCATCAAAGCAAAACCCTTGTCGTGAAATCCAACAAAAGGTCTACAACATCATTGACTAGTAGTGTCTCGCTGGTTAGAAGGAGAAACAACAATGGCGATGGTGAAACGACGCTGGTTAAAAAAGTGGGTAGAGATGAAAAAGGACAAACGGTTCTGTTGTGTGCTTTAGGGTATTGGGTTCAAGGGTTAAGGTGTTTCTCATGGCTTGCTCTTAACTTCCATATGGCTCATTGTCTTAATCTCAAGCCATCGACGCTTCAGCTTGTACAGTACACTGCTAGTCTTCCCATGGTTGCTAAGCCTCTCTATGGAGTTCTCTCTGATGTTCTTTATATTGGCGGTGCTCGTAGAGTTCCTTACATCTCCGTTGGAGTGCTTTTGCAGGGTCTAGCATGGGGTTCGTTGGCGATATTCCCTGGTGCTAGAGAAGTTCTTCCTTCACTTATGGCATTTATTCTGCTTAGTAACCTTGGAGCATCCATTACTGAAGTTTCTCAAGACGCTCTTGTTGCGGAATACGGTTTAAGATATCAGATAAATGGTCTTCAGTCTTATGCACTTATGGCTTCAGCAGTTGGAGGAATCCTTGGGAACTTACTCGGTGGATATTGCTTACTCAAGACACCTCCTAGAATCTTGTTTCTTGCTTTTACAGCTTTGTTATCTCTTCAGCTCATTGTTTCTTTATCTTCTAAAGAAGAATCTGTTAACTTGCCACGGATCGGAGAAGTAACTCCAGAGATAAGCTCTGTTTTGGGGATCGTAAAGAAACAGTTTTTGGATCTTAAGGGAATTGTTCAGGTAGATGAAATCTCCCAGCCTTTGATTTGGATAGTATCTTCCATTGCATTGGTCCCTCTTCTCTCAGGATCAGTCTTCTGCTACCAAACTCAAGTTCTAAACCTTGATCCTTCAGTTATTGGTATGTCAAAGGTTATTGGACAGTTGATGCTTCTCTGTTTAACTGTTGTTTATGATCGTTACTGGAAGAAACTTCCCATGAGGGCGTTGATCCATATCGTGCAACTCCTGTACGCGTTTTCATTACTGTTTGATTATATCTTGGTGAAGCAAATAAATCTCGCGTTCGGGATCTCAAACACGGCTTTTGTGCTCTGTTTCTCTAGTGTAGCGGAAATTCTTGCACAGTTCAAGATTCTTCCTTTCTCTGTTTTGCTAGCAAATATGTGCCCTGGAGGCTGTGAAGGATCAATCACTTCTTTCCTTGCTTCTACTCTGTGTTTGTCATCAGTTGTAAGCGGATTCACTGGAGTTGGAATGGCTAATATGATCGGGATAACATCGAAGAATTACTCAAACCTGCCTGCAGGAATTCTGATACAGTCTTTGGCAGCTTTGGTGCCTTTGTGGTTTATTCATTATGTTCCAATGTTAGAGCCTGGTTTTGAGAGAGAAGGGAAGAGAGCTATGAGTAAGAAAAGCAGAAGGAATAGACGTGTAGGGAGAGTCATAGGTCAGGAAAGTTTTGCTTACCGGCGGGAAAGAGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

538

Amino Acids

59.02

Weight (kDa)

9.72

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 2 - 332 2e-96 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1431
AccB1I GGYRCC 1 cut(s) 1462
AccI GTMKAC 1 cut(s) 143
AccII CGCG 2 cut(s) 1139, 1187
AciI CCGC 5 cut(s) 441, 614, 1235, 1362, 1600
AclWI GGATC 8 cut(s) 830, 869, 891, 979, 1004, 1108, 1202, 1318
AcsI RAATTY 2 cut(s) 1239, 1434
AcuI CTGAAG 6 cut(s) 344, 609, 632, 654, 755, 999
AfaI GTAC 4 cut(s) 62, 369, 374, 1136
AfiI CCNNNNNNNGG 3 cut(s) 138, 410, 824
AflII CTTAAG 1 cut(s) 887
AflIII ACRYGT 2 cut(s) 1137, 1558
AgsI TTSAA 2 cut(s) 284, 1255
AhlI ACTAGT 1 cut(s) 158
AjiI CACGTC 1 cut(s) 1559
AjnI CCWGG 3 cut(s) 517, 1294, 1501
AjuI GAANNNNNNNTTGG 4 cut(s) 863, 895, 981, 1013
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 7 cut(s) 72, 364, 758, 775, 849, 1457, 1529
AluI AGCT 7 cut(s) 72, 364, 758, 775, 849, 1457, 1529
Alw21I GWGCWC 2 cut(s) 448, 1218
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 8 cut(s) 830, 869, 891, 979, 1004, 1108, 1202, 1318
ApeKI GCWGC 1 cut(s) 1454
ApoI RAATTY 2 cut(s) 1239, 1434
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
Asp700I GAANNNNTTC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 955
AsuHPI GGTGA 2 cut(s) 215, 1180
AsuNHI GCTAGC 1 cut(s) 1279
AvaII GGWCC 1 cut(s) 955
BaeGI GKGCMC 1 cut(s) 1295
BanI GGYRCC 1 cut(s) 1462
BbsI GAAGAC 3 cut(s) 377, 638, 970
Bbv12I GWGCWC 2 cut(s) 448, 1218
BbvI GCAGC 1 cut(s) 1466
BccI CCATC 2 cut(s) 194, 358
BceAI ACGGC 1 cut(s) 1221
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 3 cut(s) 519, 1296, 1503
BcoDI GTCTC 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 7 cut(s) 159, 381, 491, 525, 732, 1227, 1280
BfmI CTRYAG 1 cut(s) 1428
BfrI CTTAAG 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 1431
BglI GCCNNNNNGGC 1 cut(s) 1299
BisI GCNGC 1 cut(s) 1455
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 1456
Bme1390I CCNGG 3 cut(s) 519, 1296, 1503
Bme18I GGWCC 1 cut(s) 955
BmgBI CACGTC 1 cut(s) 1559
BmgT120I GGNCC 1 cut(s) 955
BmiI GGNNCC 2 cut(s) 957, 1464
BmrFI CCNGG 3 cut(s) 519, 1296, 1503
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 3 cut(s) 112, 587, 1041
BmtI GCTAGC 1 cut(s) 1283
BmuI ACTGGG 1 cut(s) 26
BpiI GAAGAC 3 cut(s) 377, 638, 970
BplI GAGNNNNNCTC 2 cut(s) 833, 865
BpmI CTGGAG 3 cut(s) 822, 1317, 1392
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 4 cut(s) 329, 582, 704, 978
BsaBI GATNNNNATC 1 cut(s) 1118
BsaJI CCNNGG 6 cut(s) 390, 517, 571, 688, 818, 1294
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 410, 824
Bse118I RCCGGY 1 cut(s) 1596
Bse1I ACTGG 3 cut(s) 32, 1091, 1375
Bse3DI GCAATG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 3 cut(s) 519, 1296, 1503
BseDI CCNNGG 6 cut(s) 390, 517, 571, 688, 818, 1294
BseGI GGATG 1 cut(s) 578
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 3 cut(s) 138, 410, 824
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 3 cut(s) 32, 1091, 1375
BseSI GKGCMC 1 cut(s) 1295
BseXI GCAGC 1 cut(s) 1466
BseYI CCCAGC 1 cut(s) 918
Bsh1236I CGCG 2 cut(s) 1139, 1187
BshNI GGYRCC 1 cut(s) 1462
BsiHKAI GWGCWC 2 cut(s) 448, 1218
BsiSI CCGG 1 cut(s) 1597
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 3 cut(s) 138, 410, 824
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 941
Bsp1286I GDGCHC 3 cut(s) 448, 1218, 1295
Bsp1407I TGTACA 1 cut(s) 367
Bsp1720I GCTNAGC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 5 cut(s) 441, 614, 1235, 1362, 1600
BspCNI CTCAG 1 cut(s) 980
BspFNI CGCG 2 cut(s) 1139, 1187
BspLI GGNNCC 2 cut(s) 957, 1464
BspMAI CTGCAG 1 cut(s) 1432
BspMI ACCTGC 1 cut(s) 1431
BspOI GCTAGC 1 cut(s) 1283
BspPI GGATC 8 cut(s) 830, 869, 891, 979, 1004, 1108, 1202, 1318
BspT107I GGYRCC 1 cut(s) 1462
BspTI CTTAAG 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 945
BsrFI RCCGGY 1 cut(s) 1596
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 3 cut(s) 32, 1091, 1375
BssAI RCCGGY 1 cut(s) 1596
BssECI CCNNGG 6 cut(s) 390, 517, 571, 688, 818, 1294
BssT1I CCWWGG 3 cut(s) 390, 571, 688
Bst2UI CCWGG 3 cut(s) 519, 1296, 1503
Bst4CI ACNGT 9 cut(s) 253, 372, 623, 876, 1047, 1069, 1152, 1251, 1446
Bst6I CTCTTC 3 cut(s) 774, 966, 1517
BstAFI CTTAAG 1 cut(s) 887
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 3 cut(s) 309, 1281, 1428
BstDEI CTNAG 3 cut(s) 399, 563, 967
BstDSI CCRYGG 2 cut(s) 390, 818
BstF5I GGATG 1 cut(s) 578
BstFNI CGCG 2 cut(s) 1139, 1187
BstMAI GTCTC 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 355, 611, 665, 755, 1299
BstNI CCWGG 3 cut(s) 519, 1296, 1503
BstSCI CCNGG 3 cut(s) 517, 1294, 1501
BstSFI CTRYAG 1 cut(s) 1428
BstSLI GKGCMC 1 cut(s) 1295
BstUI CGCG 2 cut(s) 1139, 1187
BstV1I GCAGC 1 cut(s) 1466
BstV2I GAAGAC 3 cut(s) 377, 638, 970
BstX2I RGATCY 2 cut(s) 883, 1194
BstXI CCANNNNNNTGG 1 cut(s) 952
BstYI RGATCY 2 cut(s) 883, 1194
BtgI CCRYGG 2 cut(s) 390, 818
BtgZI GCGATG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 1559
BtsCI GGATG 1 cut(s) 578
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 375, 1368
BveI ACCTGC 1 cut(s) 1431
Cac8I GCNNGC 3 cut(s) 309, 1281, 1428
Cfr10I RCCGGY 1 cut(s) 1596
Cfr13I GGNCC 1 cut(s) 955
CseI GACGC 3 cut(s) 220, 364, 611
Csp6I GTAC 4 cut(s) 61, 368, 373, 1135
CviAII CATG 4 cut(s) 303, 391, 495, 1102
CviQI GTAC 4 cut(s) 61, 368, 373, 1135
DdeI CTNAG 3 cut(s) 399, 563, 967
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 774, 966, 1517
EarI CTCTTC 3 cut(s) 774, 966, 1517
Eco130I CCWWGG 3 cut(s) 390, 571, 688
Eco32I GATATC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 955
Eco57I CTGAAG 6 cut(s) 344, 609, 632, 654, 755, 999
EcoRI GAATTC 1 cut(s) 1434
EcoRII CCWGG 3 cut(s) 517, 1294, 1501
EcoRV GATATC 1 cut(s) 632
EcoT14I CCWWGG 3 cut(s) 390, 571, 688
ErhI CCWWGG 3 cut(s) 390, 571, 688
FaeI CATG 4 cut(s) 306, 394, 498, 1105
FalI AAGNNNNNCTT 4 cut(s) 591, 623, 1576, 1608
FaqI GGGAC 1 cut(s) 941
FatI CATG 4 cut(s) 302, 390, 494, 1101
FauI CCCGC 1 cut(s) 1593
FauNDI CATATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 1455
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 1 cut(s) 1455
FspBI CTAG 7 cut(s) 159, 381, 491, 525, 732, 1227, 1280
GluI GCNGC 1 cut(s) 1455
GsaI CCCAGC 1 cut(s) 922
GsuI CTGGAG 3 cut(s) 822, 1317, 1392
HapII CCGG 1 cut(s) 1597
HgaI GACGC 3 cut(s) 220, 364, 611
Hin1II CATG 4 cut(s) 306, 394, 498, 1105
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 6 cut(s) 684, 735, 803, 1258, 1365, 1569
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 1 cut(s) 1597
HphI GGTGA 2 cut(s) 215, 1180
Hpy166II GTNNAC 3 cut(s) 144, 375, 811
Hpy188I TCNGA 4 cut(s) 424, 636, 827, 1440
Hpy188III TCNNGA 9 cut(s) 124, 599, 721, 839, 969, 1192, 1255, 1396, 1580
Hpy8I GTNNAC 3 cut(s) 144, 375, 811
Hpy99I CGWCG 2 cut(s) 214, 358
HpyAV CCTTC 6 cut(s) 174, 549, 1023, 1301, 1511, 1542
HpyCH4III ACNGT 9 cut(s) 253, 372, 623, 876, 1047, 1069, 1152, 1251, 1446
HpyCH4IV ACGT 1 cut(s) 1558
HpyCH4V TGCA 6 cut(s) 484, 659, 950, 1126, 1247, 1430
HpyF10VI GCNNNNNNNGC 5 cut(s) 355, 611, 665, 755, 1299
HpyF3I CTNAG 3 cut(s) 399, 563, 967
HpySE526I ACGT 1 cut(s) 1558
Hsp92II CATG 4 cut(s) 306, 394, 498, 1105
KspAI GTTAAC 1 cut(s) 811
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 1 cut(s) 1466
LweI GCATC 3 cut(s) 112, 587, 1041
MaeI CTAG 7 cut(s) 159, 381, 491, 525, 732, 1227, 1280
MaeII ACGT 1 cut(s) 1558
MaeIII GTNAC 3 cut(s) 566, 832, 1082
MflI RGATCY 2 cut(s) 883, 1194
MhlI GDGCHC 3 cut(s) 448, 1218, 1295
MluCI AATT 5 cut(s) 54, 894, 1239, 1411, 1434
MluI ACGCGT 1 cut(s) 1137
MlyI GAGTC 1 cut(s) 1578
MmeI TCCRAC 4 cut(s) 156, 451, 658, 1357
MnlI CCTC 6 cut(s) 414, 674, 738, 969, 1098, 1292
MroXI GAANNNNTTC 1 cut(s) 534
MspCI CTTAAG 1 cut(s) 887
MspI CCGG 1 cut(s) 1597
MspR9I CCNGG 3 cut(s) 519, 1296, 1503
MvaI CCWGG 3 cut(s) 519, 1296, 1503
MvnI CGCG 2 cut(s) 1139, 1187
MwoI GCNNNNNNNGC 5 cut(s) 355, 611, 665, 755, 1299
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 324
NheI GCTAGC 1 cut(s) 1279
NlaIII CATG 4 cut(s) 306, 394, 498, 1105
NlaIV GGNNCC 2 cut(s) 957, 1464
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 5 cut(s) 684, 735, 803, 1258, 1365
PkrI GCNGC 1 cut(s) 1456
PleI GAGTC 1 cut(s) 1577
PpsI GAGTC 1 cut(s) 1577
Psp6I CCWGG 3 cut(s) 517, 1294, 1501
PspFI CCCAGC 1 cut(s) 918
PspGI CCWGG 3 cut(s) 517, 1294, 1501
PspN4I GGNNCC 2 cut(s) 957, 1464
PspPI GGNCC 1 cut(s) 955
PstI CTGCAG 1 cut(s) 1432
PsuI RGATCY 2 cut(s) 883, 1194
RsaI GTAC 4 cut(s) 62, 369, 374, 1136
RsaNI GTAC 4 cut(s) 61, 368, 373, 1135
SatI GCNGC 1 cut(s) 1455
Sau96I GGNCC 1 cut(s) 955
SbfI CCTGCAGG 1 cut(s) 1432
SchI GAGTC 1 cut(s) 1578
ScrFI CCNGG 3 cut(s) 519, 1296, 1503
SdaI CCTGCAGG 1 cut(s) 1432
SduI GDGCHC 3 cut(s) 448, 1218, 1295
SfaNI GCATC 3 cut(s) 112, 587, 1041
SfcI CTRYAG 1 cut(s) 1428
SinI GGWCC 1 cut(s) 955
SmlI CTYRAG 5 cut(s) 344, 597, 719, 887, 993
SmoI CTYRAG 5 cut(s) 344, 597, 719, 887, 993
SpeI ACTAGT 1 cut(s) 158
Sse8387I CCTGCAGG 1 cut(s) 1432
Sse9I AATT 5 cut(s) 54, 894, 1239, 1411, 1434
SsiI CCGC 5 cut(s) 441, 614, 1235, 1362, 1600
SspMI CTAG 7 cut(s) 159, 381, 491, 525, 732, 1227, 1280
StyD4I CCNGG 3 cut(s) 517, 1294, 1501
StyI CCWWGG 3 cut(s) 390, 571, 688
TaaI ACNGT 9 cut(s) 253, 372, 623, 876, 1047, 1069, 1152, 1251, 1446
TaiI ACGT 1 cut(s) 1561
TaqI TCGA 2 cut(s) 353, 1406
TasI AATT 5 cut(s) 54, 894, 1239, 1411, 1434
TatI WGTACW 2 cut(s) 367, 372
TfiI GAWTC 5 cut(s) 684, 735, 803, 1258, 1365
TscAI CASTG 2 cut(s) 382, 1375
TseI GCWGC 1 cut(s) 1454
TspDTI ATGAA 5 cut(s) 17, 252, 924, 1134, 1469
TspGWI ACGGA 3 cut(s) 48, 457, 835
TspRI CASTG 2 cut(s) 382, 1375
Vha464I CTTAAG 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 955
XapI RAATTY 2 cut(s) 1239, 1434
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 7 cut(s) 159, 381, 491, 525, 732, 1227, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.