Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029066.1

Orthogroup ID

OG0009098

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2524

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029066.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1606 bp

atgatttacacatcaatttcttatgagaatccatgggcacctgcaatcaatccaaaagtgatgaagctttcaagaaagcaaccacaacatccttttcactcaaaacccatcattcgttgtcaccgccaaaacccagataacaccaccatacacaaccccaaacaacccaaaatccagctcaaagatcccatcttggtcaccccaacaacgactcaagttgtttacagaaaagccaagaaaaacagggccaatgtggaaaggaggtgccttcccaaattgggaagccaacaaatgatgattttgtgtggatttgggtattgggttcaaggctttaggtgctttccgtggttggctttgaactttcacatggctcacaatcttaatatgcacccttcaacgttgcaacttgtacaacattctggtaatcttcccatggtggctaagcccttgtatggactcctctctgatgctctttatattggtggtgctcatagaattccttatgtttccattggagttcttctacaggtcctgtcttggggatcactggctctggttccagttgcagctaaggcccttccaacccttatggcatgtgttcttctcagtaatcttggagcatcaattacagaagtagcaaaggatgctcttgttgcagaatatggccagcaacacaggatgaaaggcctccagtcttatgcattcatggcattagctgctggtggaatccttgggaacttggtaggtggatatttcttaatgaaagcaccaccccgaaccatgtttctcctgttttcggttttactttccgctcaacttgcaatttcatcgagaataagagaggaatctcttggtttaccacaattgtcagaccagagtcttgcagggaaaccaatcttggaaagtcttaggaaacaattgtcggatctaatgatgggaattcaagagcaaagcattgttcatccacttacttggattgtagcttctattgccatggtcccggttctgtcaggttccattttttgctatcaaacacaatgtctaaatcttgatccttcggtcattggcatgtctcgagtgattggtcagttgatgcttctttccactaccatactttacgaccgttattggaaacaagttccaatgaggaagttggttggtattgtgcagtttgtgtatgccttttcccttcttcttgactttgttttagtgagacagatcaatcttaggctggggattcccaatgaggtttttgttctttgtttttcgggattagcagaaacaattgcacagttcaagctcttgcctttctcagtcctgtttgccaatttatgtcctcaaggttgtgaaggatctctcactgctttcttagcgtcagccttgattttttcatcaatagttagcgggtttttaggtgttggattggcttctctgattggagtaacagctggtgactactcaagcctgcctttgggcattgtggtacagtttcttgcagctttacttcccttgggatggattcatcatttacctgtgtcagaagctattgttgggaaggagaggaagagaagtttaagtaggaggagccagaaaaatagaagggttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

535

Amino Acids

58.99

Weight (kDa)

9.85

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04570 AT2G33280 AT2G33280 AT2G33280
fragaria_vesca	FvH4_4g05110 FvH4_4g05110
malus_domestica	MD13G1225100.v1.1
prunus_persica	Prupe.1G051600_v2.0.a1
pyrus_communis	pycom13g19850 pycom16g19200
rosa_chinensis	RchiOBHm_Chr4g0396031
rosa_laevigata	RLG00000009579
rosa_multiflora	Rmu_sc0015594.1_g000010 Rmu_sc0029066.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340820
rosa_rugosa	Rorug03G0352900
rosa_samantha	Rh4AG064700 Rh4AG066000 Rh4BG063400 Rh4CG070200 Rh4DG060100
rosa_wichuraiana	Rw4G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AccB1I	GGYRCC	2 cut(s)	37, 264
AccBSI	CCGCTC	1 cut(s)	812
AciI	CCGC	3 cut(s)	124, 810, 1404
AclI	AACGTT	1 cut(s)	398
AclWI	GGATC	5 cut(s)	179, 550, 933, 1046, 1360
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	2 cut(s)	495, 939
AfaI	GTAC	2 cut(s)	411, 1485
AfiI	CCNNNNNNNGG	6 cut(s)	278, 452, 538, 796, 1471, 1515
AgsI	TTSAA	6 cut(s)	72, 326, 358, 396, 944, 1297
AjuI	GAANNNNNNNTTGG	4 cut(s)	881, 913, 1533, 1565
AluBI	AGCT	9 cut(s)	67, 178, 569, 716, 983, 1300, 1448, 1499, 1544
AluI	AGCT	9 cut(s)	67, 178, 569, 716, 983, 1300, 1448, 1499, 1544
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	1077, 1207
AlwI	GGATC	5 cut(s)	179, 550, 933, 1046, 1360
AlwNI	CAGNNNCTG	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	1074
AoxI	GGCC	4 cut(s)	246, 573, 664, 685
ApeKI	GCWGC	3 cut(s)	566, 716, 1496
ApoI	RAATTY	2 cut(s)	495, 939
ArsI	GACNNNNNNTTYG	2 cut(s)	1024, 1056
AspS9I	GGNCC	4 cut(s)	246, 529, 574, 997
AsuC2I	CCSGG	1 cut(s)	1001
AsuHPI	GGTGA	3 cut(s)	113, 190, 1463
AvaI	CYCGRG	1 cut(s)	1074
AvaII	GGWCC	2 cut(s)	529, 997
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	666
BanI	GGYRCC	2 cut(s)	37, 264
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	578, 703, 1508
BccI	CCATC	4 cut(s)	116, 197, 928, 1509
BcgI	CGANNNNNNTGC	2 cut(s)	810, 844
BcnI	CCSGG	1 cut(s)	1001
BcoDI	GTCTC	2 cut(s)	1077, 1207
BfmI	CTRYAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	3 cut(s)	567, 717, 1497
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	3 cut(s)	568, 718, 1498
Bme1390I	CCNGG	1 cut(s)	1001
Bme18I	GGWCC	2 cut(s)	529, 997
BmeT110I	CYCGRG	1 cut(s)	1074
BmgT120I	GGNCC	4 cut(s)	246, 529, 574, 997
BmiI	GGNNCC	6 cut(s)	39, 266, 558, 999, 1015, 1586
BmrFI	CCNGG	1 cut(s)	1001
BmsI	GCATC	4 cut(s)	457, 629, 634, 1083
BoxI	GACNNNNGTC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	674
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	3 cut(s)	198, 1323, 1444
BpuMI	CCSGG	1 cut(s)	1001
BsaJI	CCNNGG	6 cut(s)	32, 344, 432, 730, 993, 1509
Bsc4I	CCNNNNNNNGG	6 cut(s)	278, 452, 538, 796, 1471, 1515
Bse1I	ACTGG	3 cut(s)	552, 560, 691
BseDI	CCNNGG	6 cut(s)	32, 344, 432, 730, 993, 1509
BseGI	GGATG	5 cut(s)	88, 649, 684, 961, 1520
BseLI	CCNNNNNNNGG	6 cut(s)	278, 452, 538, 796, 1471, 1515
BseMII	CTCAG	2 cut(s)	619, 1326
BseNI	ACTGG	3 cut(s)	552, 560, 691
BseRI	GAGGAG	2 cut(s)	449, 1597
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	578, 703, 1508
BseYI	CCCAGC	1 cut(s)	1231
BsgI	GTGCAG	1 cut(s)	1187
Bsh1285I	CGRYCG	1 cut(s)	1123
BshFI	GGCC	4 cut(s)	248, 575, 666, 687
BshNI	GGYRCC	2 cut(s)	37, 264
BsiEI	CGRYCG	1 cut(s)	1123
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	1074
BsiSI	CCGG	1 cut(s)	1001
BslFI	GGGAC	1 cut(s)	983
BslI	CCNNNNNNNGG	6 cut(s)	278, 452, 538, 796, 1471, 1515
BsmAI	GTCTC	2 cut(s)	1077, 1207
BsmFI	GGGAC	1 cut(s)	983
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	4 cut(s)	248, 575, 666, 687
BsoBI	CYCGRG	1 cut(s)	1074
Bsp1286I	GDGCHC	2 cut(s)	40, 490
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	3 cut(s)	32, 432, 993
BspACI	CCGC	3 cut(s)	124, 810, 1404
BspANI	GGCC	4 cut(s)	248, 575, 666, 687
BspCNI	CTCAG	2 cut(s)	618, 1325
BspLI	GGNNCC	6 cut(s)	39, 266, 558, 999, 1015, 1586
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	5 cut(s)	179, 550, 933, 1046, 1360
BspT107I	GGYRCC	2 cut(s)	37, 264
BsrBI	CCGCTC	1 cut(s)	812
BsrGI	TGTACA	1 cut(s)	409
BsrI	ACTGG	3 cut(s)	552, 560, 691
BssECI	CCNNGG	6 cut(s)	32, 344, 432, 730, 993, 1509
BssMI	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
BssT1I	CCWWGG	5 cut(s)	32, 432, 730, 993, 1509
Bst4CI	ACNGT	3 cut(s)	1124, 1293, 1488
Bst6I	CTCTTC	1 cut(s)	1559
BstAPI	GCANNNNNTGC	2 cut(s)	644, 716
BstAUI	TGTACA	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	668, 1466
BstDEI	CTNAG	7 cut(s)	441, 570, 605, 908, 1226, 1312, 1369
BstDSI	CCRYGG	4 cut(s)	32, 344, 432, 993
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	5 cut(s)	88, 649, 684, 961, 1520
BstKTI	GATC	6 cut(s)	187, 545, 928, 1054, 1221, 1355
BstMAI	GTCTC	2 cut(s)	1077, 1207
BstMBI	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
BstMCI	CGRYCG	1 cut(s)	1123
BstMWI	GCNNNNNNNGC	9 cut(s)	336, 572, 644, 653, 707, 716, 818, 989, 1370
BstNSI	RCATGY	2 cut(s)	597, 1072
BstPAI	GACNNNNGTC	1 cut(s)	876
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	999
BstSFI	CTRYAG	1 cut(s)	524
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	578, 703, 1508
BstX2I	RGATCY	3 cut(s)	184, 925, 1352
BstXI	CCANNNNNNTGG	1 cut(s)	972
BstYI	RGATCY	3 cut(s)	184, 925, 1352
BsuRI	GGCC	4 cut(s)	248, 575, 666, 687
BtgI	CCRYGG	4 cut(s)	32, 344, 432, 993
BtsCI	GGATG	5 cut(s)	88, 649, 684, 961, 1520
BtsI	GCAGTG	1 cut(s)	1359
BtsIMutI	CAGTG	2 cut(s)	545, 1359
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	668, 1466
CaiI	CAGNNNCTG	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	246, 529, 574, 997
CseI	GACGC	1 cut(s)	1362
Csp6I	GTAC	2 cut(s)	410, 1484
CviAII	CATG	8 cut(s)	33, 367, 433, 594, 706, 781, 994, 1069
CviQI	GTAC	2 cut(s)	410, 1484
DdeI	CTNAG	7 cut(s)	441, 570, 605, 908, 1226, 1312, 1369
DpnI	GATC	6 cut(s)	186, 544, 927, 1053, 1220, 1354
DpnII	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	1559
EarI	CTCTTC	1 cut(s)	1559
Eco130I	CCWWGG	5 cut(s)	32, 432, 730, 993, 1509
Eco147I	AGGCCT	1 cut(s)	687
Eco47I	GGWCC	2 cut(s)	529, 997
Eco88I	CYCGRG	1 cut(s)	1074
Eco91I	GGTNACC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	529, 574
EcoO65I	GGTNACC	1 cut(s)	196
EcoRI	GAATTC	2 cut(s)	495, 939
EcoT14I	CCWWGG	5 cut(s)	32, 432, 730, 993, 1509
EcoT22I	ATGCAT	1 cut(s)	703
ErhI	CCWWGG	5 cut(s)	32, 432, 730, 993, 1509
FaeI	CATG	8 cut(s)	36, 370, 436, 597, 709, 784, 997, 1072
FalI	AAGNNNNNCTT	2 cut(s)	1453, 1485
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	8 cut(s)	32, 366, 432, 593, 705, 780, 993, 1068
FauI	CCCGC	1 cut(s)	1397
Fnu4HI	GCNGC	3 cut(s)	567, 717, 1497
FokI	GGATG	5 cut(s)	75, 656, 691, 948, 1527
Fsp4HI	GCNGC	3 cut(s)	567, 717, 1497
GluI	GCNGC	3 cut(s)	567, 717, 1497
GsaI	CCCAGC	1 cut(s)	1235
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	4 cut(s)	248, 575, 666, 687
HapII	CCGG	1 cut(s)	1001
HgaI	GACGC	1 cut(s)	1362
Hin1II	CATG	8 cut(s)	36, 370, 436, 597, 709, 784, 997, 1072
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	8 cut(s)	28, 211, 456, 726, 845, 877, 1237, 1519
HpaII	CCGG	1 cut(s)	1001
HphI	GGTGA	3 cut(s)	113, 190, 1463
Hpy166II	GTNNAC	2 cut(s)	223, 857
Hpy188I	TCNGA	5 cut(s)	466, 871, 925, 1434, 1540
Hpy188III	TCNNGA	7 cut(s)	72, 831, 944, 1049, 1074, 1196, 1269
Hpy8I	GTNNAC	2 cut(s)	223, 857
HpyAV	CCTTC	8 cut(s)	278, 402, 587, 1065, 1199, 1343, 1549, 1593
HpyCH4III	ACNGT	3 cut(s)	1124, 1293, 1488
HpyCH4IV	ACGT	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	9 cut(s)	336, 572, 644, 653, 707, 716, 818, 989, 1370
HpyF3I	CTNAG	7 cut(s)	441, 570, 605, 908, 1226, 1312, 1369
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	8 cut(s)	36, 370, 436, 597, 709, 784, 997, 1072
Kzo9I	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
LmnI	GCTCC	2 cut(s)	617, 1584
Lsp1109I	GCAGC	3 cut(s)	578, 703, 1508
LweI	GCATC	4 cut(s)	457, 629, 634, 1083
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	4 cut(s)	119, 196, 1441, 1451
MalI	GATC	6 cut(s)	186, 544, 927, 1053, 1220, 1354
MbiI	CCGCTC	1 cut(s)	812
MboI	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
MboII	GAAGA	5 cut(s)	419, 512, 593, 1184, 1576
MfeI	CAATTG	3 cut(s)	863, 917, 1284
MflI	RGATCY	3 cut(s)	184, 925, 1352
MhlI	GDGCHC	2 cut(s)	40, 490
MlsI	TGGCCA	1 cut(s)	666
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	3 cut(s)	205, 450, 886
MmeI	TCCRAC	3 cut(s)	605, 903, 1399
MnlI	CCTC	9 cut(s)	255, 470, 698, 835, 1140, 1240, 1347, 1554, 1575
Mox20I	TGGCCA	1 cut(s)	666
Mph1103I	ATGCAT	1 cut(s)	703
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	3 cut(s)	381, 758, 1574
MslI	CAYNNNNRTG	1 cut(s)	1067
Msp20I	TGGCCA	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	1448
MspI	CCGG	1 cut(s)	1001
MspR9I	CCNGG	1 cut(s)	1001
MunI	CAATTG	3 cut(s)	863, 917, 1284
Mva1269I	GAATGC	1 cut(s)	701
MwoI	GCNNNNNNNGC	9 cut(s)	336, 572, 644, 653, 707, 716, 818, 989, 1370
NciI	CCSGG	1 cut(s)	1001
NcoI	CCATGG	3 cut(s)	32, 432, 993
NdeII	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
NlaIII	CATG	8 cut(s)	36, 370, 436, 597, 709, 784, 997, 1072
NlaIV	GGNNCC	6 cut(s)	39, 266, 558, 999, 1015, 1586
NmuCI	GTSAC	3 cut(s)	119, 196, 1451
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	597, 1072
PaeR7I	CTCGAG	1 cut(s)	1074
PaqCI	CACCTGC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	687
PctI	GAATGC	1 cut(s)	701
PfeI	GAWTC	5 cut(s)	28, 726, 845, 1237, 1519
PkrI	GCNGC	3 cut(s)	568, 718, 1498
PleI	GAGTC	3 cut(s)	205, 450, 885
PpsI	GAGTC	3 cut(s)	205, 450, 885
PpuMI	RGGWCCY	1 cut(s)	529
PshAI	GACNNNNGTC	1 cut(s)	876
Psp1406I	AACGTT	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	1231
PspN4I	GGNNCC	6 cut(s)	39, 266, 558, 999, 1015, 1586
PspPI	GGNCC	4 cut(s)	246, 529, 574, 997
PspPPI	RGGWCCY	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	3 cut(s)	184, 925, 1352
PvuII	CAGCTG	1 cut(s)	1448
RsaI	GTAC	2 cut(s)	411, 1485
RsaNI	GTAC	2 cut(s)	410, 1484
RseI	CAYNNNNRTG	1 cut(s)	1067
SaqAI	TTAA	3 cut(s)	381, 758, 1574
SatI	GCNGC	3 cut(s)	567, 717, 1497
Sau3AI	GATC	6 cut(s)	184, 542, 925, 1051, 1218, 1352
Sau96I	GGNCC	4 cut(s)	246, 529, 574, 997
SchI	GAGTC	3 cut(s)	205, 450, 886
ScrFI	CCNGG	1 cut(s)	1001
SduI	GDGCHC	2 cut(s)	40, 490
SfaNI	GCATC	4 cut(s)	457, 629, 634, 1083
SfcI	CTRYAG	1 cut(s)	524
Sfr274I	CTCGAG	1 cut(s)	1074
SinI	GGWCC	2 cut(s)	529, 997
SlaI	CTCGAG	1 cut(s)	1074
SmiMI	CAYNNNNRTG	1 cut(s)	1067
SmlI	CTYRAG	4 cut(s)	213, 1074, 1338, 1459
SmoI	CTYRAG	4 cut(s)	213, 1074, 1338, 1459
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	3 cut(s)	124, 810, 1404
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	999
StyI	CCWWGG	5 cut(s)	32, 432, 730, 993, 1509
TaaI	ACNGT	3 cut(s)	1124, 1293, 1488
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	830, 1075
TaqII	GACCGA	1 cut(s)	1048
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	5 cut(s)	28, 726, 845, 1237, 1519
Tru1I	TTAA	3 cut(s)	381, 758, 1574
Tru9I	TTAA	3 cut(s)	381, 758, 1574
TscAI	CASTG	2 cut(s)	552, 1366
TseFI	GTSAC	3 cut(s)	119, 196, 1451
TseI	GCWGC	3 cut(s)	566, 716, 1496
Tsp45I	GTSAC	3 cut(s)	119, 196, 1451
TspDTI	ATGAA	8 cut(s)	77, 694, 695, 776, 816, 950, 1380, 1511
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	552, 1366
VpaK11BI	GGWCC	2 cut(s)	529, 997
XapI	RAATTY	2 cut(s)	495, 939
XceI	RCATGY	2 cut(s)	597, 1072
XhoI	CTCGAG	1 cut(s)	1074
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.