Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009098

Physical Location & Seq

Genomic Coordinates Reverse (-)

4417436 .. 4420502

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGATTTACACATCAATTTCATATGAAAATCCATGGGCAACAGCAATCAATCCAAAAATGATGAACCTTTCAAGAAAGCAACCACACCATCCTTTTCACTTAAAACCACCCATTATTTGTTTGCACCGTCAAAACCCAGATAACACCATCATTCACAACCTCAAAGAACCCAAAATCCAGCTTAAAAATCCCATCTTGGTCACCCCAACTCAGGTTGTTTACAGAAAGGCCAAGAAAAACAGGGCCAATGTGGAAAGGAGAGGCCTTCCCAAATTGGGAAGCCAACAAATGATGATTTTGTGTGGATTTGGGTATTGGGTGCAAGGCTTTAGGTGCTTTCCATGGTTGGCTTTGAACTTTCACATGGCTCACAATCTTAATATGCACCCTTCAATATTGCAACTTGTGCAACATTCTGGTAATCTTCCCATGGTGGCCAAGCCCTTGTATGGACTCCTCTCTGATGCTCTTTACATTGGTGGTGCTCATCGAATTCCTTATGTTTCCATTGGAGTTCTTCTACAGGTCCTGTCTTGGGGATCACTAGCACTGGTTCCAGTTGCTGCAAAGGCCCTTCCCACCATTATGGCGTGTGTTCTCCTCAGTAATCTTGGAGCATCAATTACAGAAGTAGCAAAGGATGCTCTTGTTGCAGAATATGGTCAGCAACACAGGATGAAAGGCCTCCAGTCTTATGCATTCATGGCATTAGCGGCTGGTGGAATCCTTGGGAACTTATTAGGTGGATATTTCTTAATGAAAGCACCACCACGGACCATGTTTCTCCTATTTTCGGTTTTACTTTCGGCTCAACTTGCAATTTCTTCGTCAATAAGAGAGGATTCTCTTGGTTTACCACAGTTGTCAGAGCACAGTCTTGCTAGGAAACCAATCTTGGAGAGTCTCAGGAAACAATTATCGGATCTAATGATGGGAATTCAAGAGCAAAGGATTATTCGTCCACTTACTTGGATTGTAGCTTCTATTGCCATTGTCCCACTTCTGACAGGTTCCATCTTTTGCTATCAAACACAATGTCTAAATCTTGATCCTTCAGTCATTGGCATGTCTCGGGTAATTGGCCAGCTAATGCTTCTTTCCACAACAGTACTTTACGACCGTTATTGGAAACGAGTTCCAATGAGGAAGTTGATCGGTATTGTGCAGTTTGTGTATGCCTTTTCCCTCCTTCTCGACTTTATTCTAGTAAGACAGATCAATCTGAGAGTGGGGATTCCGAATGAGGTTTTCGTTCTTTGTTTTTCTGGATTAGCAGAAACAATTGCACAGTTCAAGCTCTTACCTTTCTCTGTCTTATTTGCCCACTTATGTCCTCGAGGTTGTGAAGGATCTCTCACTGCTTTCTTAGCTTCAGCCTTAATTTTTTCATCAATAGTTAGCGGGTTTTTAGGTATTGGATTGGCTTCTCTGATAGGAGTAACAGCTGGTGACTACTCAAGCCTGCCTTTGGGGATACTGGTACAGTTTGTTGCAGCTTTACTTCCCTTGGGATGGATTCATCATTTACCCATGTCAGAAACTATTGTTGGGAAGGAGCGGAAGAAAAGTTTAAGCAGGAGGAGTCAGAAAAATAGAAGGATTGGCAGAGTGGTATATGATTCAGTATATATCTACAGACGAGAGAGAGAATCTGAGGCAGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

556

Amino Acids

61.75

Weight (kDa)

9.87

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	108 - 523	3.1e-118	BT1 family
MFS_1	PF07690	114 - 398	2.8e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04570 AT2G33280 AT2G33280 AT2G33280
fragaria_vesca	FvH4_4g05110 FvH4_4g05110
malus_domestica	MD13G1225100.v1.1
prunus_persica	Prupe.1G051600_v2.0.a1
pyrus_communis	pycom13g19850 pycom16g19200
rosa_chinensis	RchiOBHm_Chr4g0396031
rosa_laevigata	RLG00000009579
rosa_multiflora	Rmu_sc0015594.1_g000010 Rmu_sc0029066.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340820
rosa_rugosa	Rorug03G0352900
rosa_samantha	Rh4AG064700 Rh4AG066000 Rh4BG063400 Rh4CG070200 Rh4DG060100
rosa_wichuraiana	Rw4G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1335
AccBSI	CCGCTC	1 cut(s)	1558
AciI	CCGC	3 cut(s)	713, 1401, 1558
AclWI	GGATC	4 cut(s)	547, 930, 1043, 1357
AcoI	YGGCCR	2 cut(s)	435, 1081
AcsI	RAATTY	2 cut(s)	492, 936
AcuI	CTGAAG	2 cut(s)	1038, 1356
AfaI	GTAC	2 cut(s)	1110, 1482
AfiI	CCNNNNNNNGG	7 cut(s)	211, 275, 449, 535, 793, 1468, 1512
AgsI	TTSAA	5 cut(s)	72, 355, 393, 941, 1294
AjuI	GAANNNNNNNTTGG	4 cut(s)	878, 910, 1530, 1562
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	7 cut(s)	181, 980, 1087, 1297, 1370, 1445, 1496
AluI	AGCT	7 cut(s)	181, 980, 1087, 1297, 1370, 1445, 1496
Alw21I	GWGCWC	2 cut(s)	487, 873
Alw26I	GTCTC	2 cut(s)	908, 1074
AlwI	GGATC	4 cut(s)	547, 930, 1043, 1357
AlwNI	CAGNNNCTG	2 cut(s)	529, 563
Ama87I	CYCGRG	2 cut(s)	1071, 1335
AoxI	GGCC	7 cut(s)	228, 243, 262, 435, 570, 682, 1081
ApeKI	GCWGC	2 cut(s)	563, 1493
ApoI	RAATTY	2 cut(s)	492, 936
ArsI	GACNNNNNNTTYG	2 cut(s)	1021, 1053
AspS9I	GGNCC	4 cut(s)	243, 526, 571, 774
AsuHPI	GGTGA	2 cut(s)	193, 1460
AvaI	CYCGRG	2 cut(s)	1071, 1335
AvaII	GGWCC	2 cut(s)	526, 774
BalI	TGGCCA	2 cut(s)	437, 1083
Bbv12I	GWGCWC	2 cut(s)	487, 873
BbvI	GCAGC	2 cut(s)	550, 1505
BccI	CCATC	6 cut(s)	96, 155, 200, 925, 1022, 1506
BcgI	CGANNNNNNTGC	2 cut(s)	807, 841
BciVI	GTATCC	1 cut(s)	1467
BcoDI	GTCTC	2 cut(s)	908, 1074
BfaI	CTAG	3 cut(s)	545, 882, 1205
BfmI	CTRYAG	2 cut(s)	521, 1633
BfuI	GTATCC	1 cut(s)	1467
BisI	GCNGC	3 cut(s)	564, 714, 1494
BlsI	GCNGC	3 cut(s)	565, 715, 1495
BmcAI	AGTACT	1 cut(s)	1110
Bme18I	GGWCC	2 cut(s)	526, 774
BmeT110I	CYCGRG	2 cut(s)	1071, 1335
BmgT120I	GGNCC	4 cut(s)	243, 526, 571, 774
BmiI	GGNNCC	2 cut(s)	555, 1012
BmsI	GCATC	3 cut(s)	454, 626, 631
BpmI	CTGGAG	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	1441
BsaJI	CCNNGG	6 cut(s)	32, 341, 429, 727, 770, 1506
Bsc4I	CCNNNNNNNGG	7 cut(s)	211, 275, 449, 535, 793, 1468, 1512
Bse1I	ACTGG	4 cut(s)	555, 557, 688, 1482
BseDI	CCNNGG	6 cut(s)	32, 341, 429, 727, 770, 1506
BseGI	GGATG	4 cut(s)	88, 646, 681, 1517
BseLI	CCNNNNNNNGG	7 cut(s)	211, 275, 449, 535, 793, 1468, 1512
BseMII	CTCAG	5 cut(s)	224, 616, 919, 1214, 1644
BseNI	ACTGG	4 cut(s)	555, 557, 688, 1482
BseRI	GAGGAG	3 cut(s)	446, 590, 1594
BseXI	GCAGC	2 cut(s)	550, 1505
BsgI	GTGCAG	1 cut(s)	1184
Bsh1285I	CGRYCG	1 cut(s)	1120
BshFI	GGCC	7 cut(s)	230, 245, 264, 437, 572, 684, 1083
BsiEI	CGRYCG	1 cut(s)	1120
BsiHKAI	GWGCWC	2 cut(s)	487, 873
BsiHKCI	CYCGRG	2 cut(s)	1071, 1335
BslFI	GGGAC	1 cut(s)	980
BslI	CCNNNNNNNGG	7 cut(s)	211, 275, 449, 535, 793, 1468, 1512
BsmAI	GTCTC	2 cut(s)	908, 1074
BsmFI	GGGAC	1 cut(s)	980
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	7 cut(s)	230, 245, 264, 437, 572, 684, 1083
BsoBI	CYCGRG	2 cut(s)	1071, 1335
Bsp1286I	GDGCHC	2 cut(s)	487, 873
Bsp143I	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
Bsp19I	CCATGG	3 cut(s)	32, 341, 429
BspACI	CCGC	3 cut(s)	713, 1401, 1558
BspANI	GGCC	7 cut(s)	230, 245, 264, 437, 572, 684, 1083
BspCNI	CTCAG	5 cut(s)	223, 615, 918, 1215, 1645
BspLI	GGNNCC	2 cut(s)	555, 1012
BspPI	GGATC	4 cut(s)	547, 930, 1043, 1357
BsrBI	CCGCTC	1 cut(s)	1558
BsrI	ACTGG	4 cut(s)	555, 557, 688, 1482
BssECI	CCNNGG	6 cut(s)	32, 341, 429, 727, 770, 1506
BssMI	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
BssT1I	CCWWGG	5 cut(s)	32, 341, 429, 727, 1506
Bst4CI	ACNGT	7 cut(s)	128, 861, 875, 1108, 1121, 1290, 1485
BstAPI	GCANNNNNTGC	2 cut(s)	406, 641
BstC8I	GCNNGC	2 cut(s)	1085, 1463
BstDEI	CTNAG	6 cut(s)	210, 602, 905, 1223, 1366, 1653
BstDSI	CCRYGG	4 cut(s)	32, 341, 429, 770
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	4 cut(s)	88, 646, 681, 1517
BstKTI	GATC	6 cut(s)	542, 925, 1051, 1155, 1218, 1352
BstMAI	GTCTC	2 cut(s)	908, 1074
BstMBI	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
BstMCI	CGRYCG	1 cut(s)	1120
BstNSI	RCATGY	1 cut(s)	1069
BstPI	GGTNACC	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	521, 1633
BstV1I	GCAGC	2 cut(s)	550, 1505
BstX2I	RGATCY	2 cut(s)	922, 1349
BstXI	CCANNNNNNTGG	2 cut(s)	586, 969
BstYI	RGATCY	2 cut(s)	922, 1349
BsuI	GTATCC	1 cut(s)	1467
BsuRI	GGCC	7 cut(s)	230, 245, 264, 437, 572, 684, 1083
BtgI	CCRYGG	4 cut(s)	32, 341, 429, 770
BtsCI	GGATG	4 cut(s)	88, 646, 681, 1517
BtsI	GCAGTG	1 cut(s)	1356
BtsIMutI	CAGTG	2 cut(s)	548, 1356
Cac8I	GCNNGC	2 cut(s)	1085, 1463
CaiI	CAGNNNCTG	2 cut(s)	529, 563
Cfr13I	GGNCC	4 cut(s)	243, 526, 571, 774
Csp6I	GTAC	2 cut(s)	1109, 1481
CviAII	CATG	8 cut(s)	33, 342, 364, 430, 703, 778, 1066, 1531
CviQI	GTAC	2 cut(s)	1109, 1481
DdeI	CTNAG	6 cut(s)	210, 602, 905, 1223, 1366, 1653
DpnI	GATC	6 cut(s)	541, 924, 1050, 1154, 1217, 1351
DpnII	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
EaeI	YGGCCR	2 cut(s)	435, 1081
Eco130I	CCWWGG	5 cut(s)	32, 341, 429, 727, 1506
Eco147I	AGGCCT	2 cut(s)	264, 684
Eco47I	GGWCC	2 cut(s)	526, 774
Eco57I	CTGAAG	2 cut(s)	1038, 1356
Eco88I	CYCGRG	2 cut(s)	1071, 1335
Eco91I	GGTNACC	1 cut(s)	199
EcoO109I	RGGNCCY	2 cut(s)	526, 571
EcoO65I	GGTNACC	1 cut(s)	199
EcoRI	GAATTC	2 cut(s)	492, 936
EcoT14I	CCWWGG	5 cut(s)	32, 341, 429, 727, 1506
EcoT22I	ATGCAT	1 cut(s)	700
ErhI	CCWWGG	5 cut(s)	32, 341, 429, 727, 1506
FaeI	CATG	8 cut(s)	36, 345, 367, 433, 706, 781, 1069, 1534
FalI	AAGNNNNNCTT	2 cut(s)	1450, 1482
FaqI	GGGAC	1 cut(s)	980
FatI	CATG	8 cut(s)	32, 341, 363, 429, 702, 777, 1065, 1530
FauI	CCCGC	1 cut(s)	1394
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	564, 714, 1494
FokI	GGATG	4 cut(s)	75, 653, 688, 1524
Fsp4HI	GCNGC	3 cut(s)	564, 714, 1494
FspBI	CTAG	3 cut(s)	545, 882, 1205
GluI	GCNGC	3 cut(s)	564, 714, 1494
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	7 cut(s)	230, 245, 264, 437, 572, 684, 1083
Hin1II	CATG	8 cut(s)	36, 345, 367, 433, 706, 781, 1069, 1534
HinfI	GANTC	9 cut(s)	453, 723, 842, 901, 1234, 1516, 1582, 1619, 1649
HphI	GGTGA	2 cut(s)	193, 1460
Hpy166II	GTNNAC	3 cut(s)	220, 854, 962
Hpy188III	TCNNGA	6 cut(s)	72, 907, 941, 1046, 1193, 1266
Hpy8I	GTNNAC	3 cut(s)	220, 854, 962
HpyAV	CCTTC	8 cut(s)	275, 399, 584, 1062, 1199, 1340, 1546, 1590
HpyCH4III	ACNGT	7 cut(s)	128, 861, 875, 1108, 1121, 1290, 1485
HpyF3I	CTNAG	6 cut(s)	210, 602, 905, 1223, 1366, 1653
Hsp92II	CATG	8 cut(s)	36, 345, 367, 433, 706, 781, 1069, 1534
Kzo9I	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
LmnI	GCTCC	2 cut(s)	614, 1555
Lsp1109I	GCAGC	2 cut(s)	550, 1505
LweI	GCATC	3 cut(s)	454, 626, 631
MaeI	CTAG	3 cut(s)	545, 882, 1205
MaeIII	GTNAC	3 cut(s)	199, 1438, 1448
MalI	GATC	6 cut(s)	541, 924, 1050, 1154, 1217, 1351
MbiI	CCGCTC	1 cut(s)	1558
MboI	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
MboII	GAAGA	4 cut(s)	416, 509, 816, 1573
MfeI	CAATTG	1 cut(s)	1281
MflI	RGATCY	2 cut(s)	922, 1349
MhlI	GDGCHC	2 cut(s)	487, 873
MlsI	TGGCCA	2 cut(s)	437, 1083
MluNI	TGGCCA	2 cut(s)	437, 1083
MlyI	GAGTC	3 cut(s)	447, 910, 1591
Mox20I	TGGCCA	2 cut(s)	437, 1083
Mph1103I	ATGCAT	1 cut(s)	700
MscI	TGGCCA	2 cut(s)	437, 1083
MseI	TTAA	6 cut(s)	101, 183, 378, 755, 1379, 1571
MslI	CAYNNNNRTG	2 cut(s)	584, 1064
Msp20I	TGGCCA	2 cut(s)	437, 1083
MspA1I	CMGCKG	1 cut(s)	1445
MunI	CAATTG	1 cut(s)	1281
Mva1269I	GAATGC	1 cut(s)	698
NcoI	CCATGG	3 cut(s)	32, 341, 429
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
NlaIII	CATG	8 cut(s)	36, 345, 367, 433, 706, 781, 1069, 1534
NlaIV	GGNNCC	2 cut(s)	555, 1012
NmuCI	GTSAC	2 cut(s)	199, 1448
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	1069
PaeR7I	CTCGAG	1 cut(s)	1335
PceI	AGGCCT	2 cut(s)	264, 684
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	6 cut(s)	723, 842, 1234, 1516, 1619, 1649
PkrI	GCNGC	3 cut(s)	565, 715, 1495
PleI	GAGTC	3 cut(s)	447, 909, 1590
PpsI	GAGTC	3 cut(s)	447, 909, 1590
PpuMI	RGGWCCY	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	555, 1012
PspPI	GGNCC	4 cut(s)	243, 526, 571, 774
PspPPI	RGGWCCY	1 cut(s)	526
PspXI	VCTCGAGB	1 cut(s)	1335
PstNI	CAGNNNCTG	2 cut(s)	529, 563
PsuI	RGATCY	2 cut(s)	922, 1349
PvuII	CAGCTG	1 cut(s)	1445
RsaI	GTAC	2 cut(s)	1110, 1482
RsaNI	GTAC	2 cut(s)	1109, 1481
RseI	CAYNNNNRTG	2 cut(s)	584, 1064
SaqAI	TTAA	6 cut(s)	101, 183, 378, 755, 1379, 1571
SatI	GCNGC	3 cut(s)	564, 714, 1494
Sau3AI	GATC	6 cut(s)	539, 922, 1048, 1152, 1215, 1349
Sau96I	GGNCC	4 cut(s)	243, 526, 571, 774
ScaI	AGTACT	1 cut(s)	1110
SchI	GAGTC	3 cut(s)	447, 910, 1591
SduI	GDGCHC	2 cut(s)	487, 873
SfaNI	GCATC	3 cut(s)	454, 626, 631
SfcI	CTRYAG	2 cut(s)	521, 1633
Sfr274I	CTCGAG	1 cut(s)	1335
SinI	GGWCC	2 cut(s)	526, 774
SlaI	CTCGAG	1 cut(s)	1335
SmiMI	CAYNNNNRTG	2 cut(s)	584, 1064
SmlI	CTYRAG	2 cut(s)	1335, 1456
SmoI	CTYRAG	2 cut(s)	1335, 1456
SseBI	AGGCCT	2 cut(s)	264, 684
SsiI	CCGC	3 cut(s)	713, 1401, 1558
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	3 cut(s)	545, 882, 1205
StuI	AGGCCT	2 cut(s)	264, 684
StyI	CCWWGG	5 cut(s)	32, 341, 429, 727, 1506
TaaI	ACNGT	7 cut(s)	128, 861, 875, 1108, 1121, 1290, 1485
TaqI	TCGA	3 cut(s)	490, 1194, 1336
TatI	WGTACW	1 cut(s)	1108
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	6 cut(s)	723, 842, 1234, 1516, 1619, 1649
Tru1I	TTAA	6 cut(s)	101, 183, 378, 755, 1379, 1571
Tru9I	TTAA	6 cut(s)	101, 183, 378, 755, 1379, 1571
TscAI	CASTG	2 cut(s)	555, 1363
TseFI	GTSAC	2 cut(s)	199, 1448
TseI	GCWGC	2 cut(s)	563, 1493
Tsp45I	GTSAC	2 cut(s)	199, 1448
TspDTI	ATGAA	8 cut(s)	9, 39, 77, 691, 692, 773, 1377, 1508
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	2 cut(s)	555, 1363
VpaK11BI	GGWCC	2 cut(s)	526, 774
XapI	RAATTY	2 cut(s)	492, 936
XceI	RCATGY	1 cut(s)	1069
XhoI	CTCGAG	1 cut(s)	1335
XspI	CTAG	3 cut(s)	545, 882, 1205
ZrmI	AGTACT	1 cut(s)	1110
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.