Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009098

Physical Location & Seq

Genomic Coordinates Reverse (-)

15787905 .. 15790153

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGATTTATCCATCAATTTCTTCTGAAAATCCATGGATATCATCACTGTCAATCACCCCAAAACCCCCACCAAAAAAGCAACCTCCTTTCCACCGAAACCCCATCCTTTGTTTTCACCGCCTAAACCCAGCAGGACCCATCCAACCTAAAACCCAGATCAAAAACCCAATCCTGCCAAACTCAGCAACTCAAGTTGTTTACAGAAAAACCAGGAGAAGCAGCAGCCATGAGGAAAGGAGAGGCTTTCGATTTCCCCAACTGGGTAGGCAGCAAATGTTGTTTCTGTGTGGATTTGGGTACTGGATGCAGGGTTTCAGGTGTTTTCCATGGCTGGCTCTCAACTTCCACATGGCCCACAATCTGCAAATGCATCCTTCCACATTGCAGCTTGTGCAGCATTCTGCAAACCTTCCCATGGTGGCCAAGCCCTTGTATGGAGTCCTTTCTGATGCTCTTTACATTTCTGGTGCTCATAGAGTTCCTTATATCTCCATTGGAGTTGTTTTACAGGTCTTGTCTTGGGGGCCAATGGCACTGATCCCTGTTGCAGCTCGAGGAGTTCCTACCCTCATGGCATGCGTTCTTCTGAGTAATCTTGGAGCGTCCATTACAGAAGTAGCACAGGATGCTCTTGTTGCAGAGTATGGCCAAGAAAAAAATATGACTGGCCTCCAGTCTTATGCATTCATGGCAGCAGCTGCTGGTGGAATCCTTGGTAACTTAATAGGTGGATATTTCTTGATGAAAACACCGCCCAGAACCATGTTTCTCGTATTTGCAGTTTTACTTTCCGCTCAGCTTGCAATTTCGTTGAGAATACGAGAGGAATCTCTTGGTTTACCACAGTTGCTGGATAACAGTCTTATACGAAAGCCAGTCTTTGAAAGTATCGGAAAACAATTTTCTGAGCTGCAGATGGGAATTCAAGAGGAAAGTATTGCTCGCCCTCTTATTTGGATTGTAGCTTCTATTACCATGGTCCCAGTCCTCTCAGGTTCCATCTTCTGCTACCAAACACAATATCTACATCTCGATCCTTCAATCATTGGCATGTCTCGAGTGATCGGCCAGTTGATGCTTCTTTCCACTGCTGTACTTTATGACCGTTATTGGAAAAAAGTTCCGGTGAGAAGGTTGGTTGGTGTTGTTCAGCTGGTGTATGCCTTTTCGCTTCTTCTTGACCTTGTTTTAGTGAGACGGATCAATGTCAGACTGGGGATTCCAAATGAGGTGTTTGTTCTTTGTTTTTCGGGGTTAGCAGAGACTATTGCACAGTTCAAGATCTTGCCTTTCACAATACTATTTGCGGATTTGTGCCCTCAAGGATGCGAAGGATCTCTAACTTCTTTCTTAGCATCAGCCTTGTGCTTTTCGTCAATAGCTAGTGGGGTTTTAGGTGTTGGACTGGCTTCTCTGATAGGAATAACGGCAGGCAACTACTCAAGCCTGCCCTTCGGGATTATGGCACAATTCCTTGTTGCTTTATTGCCTTTAGGATGGCTTTATATTTTACCCATGTCAGAAGGTGTCGTTAGGCAGGAGCGGAAGAGAGGTTTCAGTAGAAGAAGTCAGAAAAATAGAAGGGTCGGTCGAGTAGTGTATGGTTCAGTATTTATCTACAGACGTGAGAGAGAATCAGAGGCAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

551

Amino Acids

61.05

Weight (kDa)

9.79

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04570 AT2G33280 AT2G33280 AT2G33280
fragaria_vesca	FvH4_4g05110 FvH4_4g05110
malus_domestica	MD13G1225100.v1.1
prunus_persica	Prupe.1G051600_v2.0.a1
pyrus_communis	pycom13g19850 pycom16g19200
rosa_chinensis	RchiOBHm_Chr4g0396031
rosa_laevigata	RLG00000009579
rosa_multiflora	Rmu_sc0015594.1_g000010 Rmu_sc0029066.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340820
rosa_rugosa	Rorug03G0352900
rosa_samantha	Rh4AG064700 Rh4AG066000 Rh4BG063400 Rh4CG070200 Rh4DG060100
rosa_wichuraiana	Rw4G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	794, 1543
AciI	CCGC	5 cut(s)	118, 752, 792, 1307, 1543
AclWI	GGATC	4 cut(s)	532, 1028, 1208, 1342
AcoI	YGGCCR	3 cut(s)	420, 646, 1066
AcsI	RAATTY	1 cut(s)	921
AfaI	GTAC	2 cut(s)	299, 1095
AfiI	CCNNNNNNNGG	3 cut(s)	260, 415, 434
AgsI	TTSAA	4 cut(s)	884, 926, 1041, 1279
AjiI	CACGTC	1 cut(s)	1625
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	8 cut(s)	388, 551, 698, 799, 910, 965, 1153, 1382
AluI	AGCT	8 cut(s)	388, 551, 698, 799, 910, 965, 1153, 1382
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	3 cut(s)	1059, 1189, 1256
AlwI	GGATC	4 cut(s)	532, 1028, 1208, 1342
AlwNI	CAGNNNCTG	3 cut(s)	698, 701, 850
Ama87I	CYCGRG	2 cut(s)	552, 1056
AoxI	GGCC	6 cut(s)	351, 420, 524, 646, 667, 1066
ApoI	RAATTY	1 cut(s)	921
AspS9I	GGNCC	4 cut(s)	134, 352, 524, 979
AsuHPI	GGTGA	3 cut(s)	46, 107, 1138
AvaI	CYCGRG	2 cut(s)	552, 1056
AvaII	GGWCC	2 cut(s)	134, 979
BaeGI	GKGCMC	1 cut(s)	1319
BalI	TGGCCA	2 cut(s)	422, 648
Bbv12I	GWGCWC	1 cut(s)	472
BccI	CCATC	6 cut(s)	19, 110, 146, 910, 1007, 1491
BceAI	ACGGC	1 cut(s)	1443
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	1059, 1189, 1256
BfaI	CTAG	1 cut(s)	1383
BfmI	CTRYAG	2 cut(s)	911, 1618
BglII	AGATCT	1 cut(s)	1281
BlpI	GCTNAGC	1 cut(s)	795
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	134, 979
BmeT110I	CYCGRG	2 cut(s)	552, 1056
BmgBI	CACGTC	1 cut(s)	1625
BmgT120I	GGNCC	4 cut(s)	134, 352, 524, 979
BmiI	GGNNCC	4 cut(s)	136, 525, 981, 997
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	3 cut(s)	269, 977, 1223
BmsI	GCATC	7 cut(s)	294, 379, 439, 616, 1065, 1316, 1364
BmuI	ACTGGG	3 cut(s)	269, 977, 1223
BpmI	CTGGAG	1 cut(s)	656
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	3 cut(s)	174, 1305, 1426
BsaJI	CCNNGG	5 cut(s)	32, 326, 414, 712, 975
BsaWI	WCCGGW	1 cut(s)	1123
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 415, 434
Bse1I	ACTGG	9 cut(s)	264, 305, 670, 673, 875, 983, 1069, 1218, 1410
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	5 cut(s)	32, 326, 414, 712, 975
BseGI	GGATG	7 cut(s)	102, 138, 309, 370, 631, 1331, 1502
BseLI	CCNNNNNNNGG	3 cut(s)	260, 415, 434
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	5 cut(s)	195, 578, 809, 897, 1005
BseNI	ACTGG	9 cut(s)	264, 305, 670, 673, 875, 983, 1069, 1218, 1410
BseRI	GAGGAG	1 cut(s)	570
BseSI	GKGCMC	1 cut(s)	1319
BseYI	CCCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	1591
BshFI	GGCC	6 cut(s)	353, 422, 526, 648, 669, 1068
BsiEI	CGRYCG	1 cut(s)	1591
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	2 cut(s)	552, 1056
BsiSI	CCGG	1 cut(s)	1124
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	3 cut(s)	260, 415, 434
BsmAI	GTCTC	3 cut(s)	1059, 1189, 1256
BsmBI	CGTCTC	1 cut(s)	1189
BsmFI	GGGAC	1 cut(s)	965
BsmI	GAATGC	2 cut(s)	397, 683
BsnI	GGCC	6 cut(s)	353, 422, 526, 648, 669, 1068
BsoBI	CYCGRG	2 cut(s)	552, 1056
Bsp1286I	GDGCHC	2 cut(s)	472, 1319
Bsp143I	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
Bsp1720I	GCTNAGC	1 cut(s)	795
Bsp19I	CCATGG	4 cut(s)	32, 326, 414, 975
BspACI	CCGC	5 cut(s)	118, 752, 792, 1307, 1543
BspANI	GGCC	6 cut(s)	353, 422, 526, 648, 669, 1068
BspCNI	CTCAG	5 cut(s)	194, 579, 808, 898, 1004
BspLI	GGNNCC	4 cut(s)	136, 525, 981, 997
BspMAI	CTGCAG	1 cut(s)	915
BspPI	GGATC	4 cut(s)	532, 1028, 1208, 1342
BsrBI	CCGCTC	2 cut(s)	794, 1543
BsrDI	GCAATG	1 cut(s)	380
BsrI	ACTGG	9 cut(s)	264, 305, 670, 673, 875, 983, 1069, 1218, 1410
BssECI	CCNNGG	5 cut(s)	32, 326, 414, 712, 975
BssMI	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
BssT1I	CCWWGG	5 cut(s)	32, 326, 414, 712, 975
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	5 cut(s)	48, 846, 860, 1106, 1275
Bst6I	CTCTTC	2 cut(s)	1541, 1641
BstAPI	GCANNNNNTGC	3 cut(s)	391, 626, 698
BstC8I	GCNNGC	6 cut(s)	333, 577, 801, 943, 1432, 1448
BstDEI	CTNAG	6 cut(s)	181, 587, 795, 906, 991, 1351
BstDSI	CCRYGG	4 cut(s)	32, 326, 414, 975
BstF5I	GGATG	7 cut(s)	102, 138, 309, 370, 631, 1331, 1502
BstKTI	GATC	7 cut(s)	159, 540, 1036, 1065, 1203, 1284, 1337
BstMAI	GTCTC	3 cut(s)	1059, 1189, 1256
BstMBI	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
BstMCI	CGRYCG	1 cut(s)	1591
BstMWI	GCNNNNNNNGC	7 cut(s)	391, 394, 626, 635, 689, 698, 800
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	2 cut(s)	579, 1054
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	911, 1618
BstSLI	GKGCMC	1 cut(s)	1319
BstX2I	RGATCY	2 cut(s)	1281, 1334
BstYI	RGATCY	2 cut(s)	1281, 1334
BsuRI	GGCC	6 cut(s)	353, 422, 526, 648, 669, 1068
BtgI	CCRYGG	4 cut(s)	32, 326, 414, 975
BtrI	CACGTC	1 cut(s)	1625
BtsCI	GGATG	7 cut(s)	102, 138, 309, 370, 631, 1331, 1502
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	3 cut(s)	44, 533, 1086
Cac8I	GCNNGC	6 cut(s)	333, 577, 801, 943, 1432, 1448
CaiI	CAGNNNCTG	3 cut(s)	698, 701, 850
Cfr13I	GGNCC	4 cut(s)	134, 352, 524, 979
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	298, 1094
CviQI	GTAC	2 cut(s)	298, 1094
DdeI	CTNAG	6 cut(s)	181, 587, 795, 906, 991, 1351
DpnI	GATC	7 cut(s)	158, 539, 1035, 1064, 1202, 1283, 1336
DpnII	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
EaeI	YGGCCR	3 cut(s)	420, 646, 1066
Eam1104I	CTCTTC	2 cut(s)	1541, 1641
EarI	CTCTTC	2 cut(s)	1541, 1641
Eco130I	CCWWGG	5 cut(s)	32, 326, 414, 712, 975
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	134, 979
Eco88I	CYCGRG	2 cut(s)	552, 1056
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	921
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	5 cut(s)	32, 326, 414, 712, 975
EcoT22I	ATGCAT	2 cut(s)	372, 685
ErhI	CCWWGG	5 cut(s)	32, 326, 414, 712, 975
Esp3I	CGTCTC	1 cut(s)	1189
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FaqI	GGGAC	1 cut(s)	965
FokI	GGATG	7 cut(s)	89, 125, 316, 357, 638, 1338, 1509
FspBI	CTAG	1 cut(s)	1383
GsaI	CCCAGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	6 cut(s)	353, 422, 526, 648, 669, 1068
HapII	CCGG	1 cut(s)	1124
HgaI	GACGC	1 cut(s)	591
HinfI	GANTC	5 cut(s)	438, 708, 827, 1219, 1634
HpaII	CCGG	1 cut(s)	1124
HphI	GGTGA	3 cut(s)	46, 107, 1138
Hpy166II	GTNNAC	2 cut(s)	199, 839
Hpy188III	TCNNGA	7 cut(s)	739, 926, 1031, 1056, 1178, 1279, 1456
Hpy8I	GTNNAC	2 cut(s)	199, 839
HpyAV	CCTTC	8 cut(s)	384, 419, 1047, 1125, 1325, 1462, 1517, 1575
HpyCH4III	ACNGT	5 cut(s)	48, 846, 860, 1106, 1275
HpyCH4IV	ACGT	1 cut(s)	1624
HpyF10VI	GCNNNNNNNGC	7 cut(s)	391, 394, 626, 635, 689, 698, 800
HpyF3I	CTNAG	6 cut(s)	181, 587, 795, 906, 991, 1351
HpySE526I	ACGT	1 cut(s)	1624
Kzo9I	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
LmnI	GCTCC	2 cut(s)	599, 1540
LweI	GCATC	7 cut(s)	294, 379, 439, 616, 1065, 1316, 1364
MaeI	CTAG	1 cut(s)	1383
MaeII	ACGT	1 cut(s)	1624
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	7 cut(s)	158, 539, 1035, 1064, 1202, 1283, 1336
MbiI	CCGCTC	2 cut(s)	794, 1543
MboI	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
MboII	GAAGA	6 cut(s)	12, 575, 994, 1166, 1558, 1575
MflI	RGATCY	2 cut(s)	1281, 1334
MhlI	GDGCHC	2 cut(s)	472, 1319
MlsI	TGGCCA	2 cut(s)	422, 648
MluCI	AATT	5 cut(s)	15, 804, 899, 921, 1469
MluNI	TGGCCA	2 cut(s)	422, 648
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	2 cut(s)	166, 1381
Mox20I	TGGCCA	2 cut(s)	422, 648
Mph1103I	ATGCAT	2 cut(s)	372, 685
MscI	TGGCCA	2 cut(s)	422, 648
MseI	TTAA	1 cut(s)	722
MslI	CAYNNNNRTG	1 cut(s)	1049
Msp20I	TGGCCA	2 cut(s)	422, 648
MspA1I	CMGCKG	2 cut(s)	698, 1153
MspI	CCGG	1 cut(s)	1124
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	2 cut(s)	397, 683
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	7 cut(s)	391, 394, 626, 635, 689, 698, 800
NcoI	CCATGG	4 cut(s)	32, 326, 414, 975
NdeII	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
NlaIV	GGNNCC	4 cut(s)	136, 525, 981, 997
NsiI	ATGCAT	2 cut(s)	372, 685
NspI	RCATGY	2 cut(s)	579, 1054
PaeI	GCATGC	1 cut(s)	579
PaeR7I	CTCGAG	2 cut(s)	552, 1056
PctI	GAATGC	2 cut(s)	397, 683
PfeI	GAWTC	4 cut(s)	708, 827, 1219, 1634
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	4 cut(s)	136, 525, 981, 997
PspPI	GGNCC	4 cut(s)	134, 352, 524, 979
PspPPI	RGGWCCY	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	915
PstNI	CAGNNNCTG	3 cut(s)	698, 701, 850
PsuI	RGATCY	2 cut(s)	1281, 1334
PvuII	CAGCTG	2 cut(s)	698, 1153
RsaI	GTAC	2 cut(s)	299, 1095
RsaNI	GTAC	2 cut(s)	298, 1094
RseI	CAYNNNNRTG	1 cut(s)	1049
SaqAI	TTAA	1 cut(s)	722
Sau3AI	GATC	7 cut(s)	156, 537, 1033, 1062, 1200, 1281, 1334
Sau96I	GGNCC	4 cut(s)	134, 352, 524, 979
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	472, 1319
SfaNI	GCATC	7 cut(s)	294, 379, 439, 616, 1065, 1316, 1364
SfcI	CTRYAG	2 cut(s)	911, 1618
Sfr274I	CTCGAG	2 cut(s)	552, 1056
SinI	GGWCC	2 cut(s)	134, 979
SlaI	CTCGAG	2 cut(s)	552, 1056
SmiMI	CAYNNNNRTG	1 cut(s)	1049
SmlI	CTYRAG	5 cut(s)	189, 552, 1056, 1320, 1441
SmoI	CTYRAG	5 cut(s)	189, 552, 1056, 1320, 1441
SphI	GCATGC	1 cut(s)	579
Sse9I	AATT	5 cut(s)	15, 804, 899, 921, 1469
SsiI	CCGC	5 cut(s)	118, 752, 792, 1307, 1543
SspMI	CTAG	1 cut(s)	1383
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	5 cut(s)	32, 326, 414, 712, 975
TaaI	ACNGT	5 cut(s)	48, 846, 860, 1106, 1275
TaiI	ACGT	1 cut(s)	1627
TaqI	TCGA	5 cut(s)	247, 553, 1032, 1057, 1591
TaqII	GACCGA	1 cut(s)	1577
TasI	AATT	5 cut(s)	15, 804, 899, 921, 1469
TatI	WGTACW	1 cut(s)	1093
TfiI	GAWTC	4 cut(s)	708, 827, 1219, 1634
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TscAI	CASTG	3 cut(s)	51, 540, 1093
TspDTI	ATGAA	2 cut(s)	676, 758
TspGWI	ACGGA	1 cut(s)	1213
TspRI	CASTG	3 cut(s)	51, 540, 1093
VpaK11BI	GGWCC	2 cut(s)	134, 979
XapI	RAATTY	1 cut(s)	921
XceI	RCATGY	2 cut(s)	579, 1054
XhoI	CTCGAG	2 cut(s)	552, 1056
XspI	CTAG	1 cut(s)	1383
Zsp2I	ATGCAT	2 cut(s)	372, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.