Rroxscaffold_5G00340820

Folate-Biopterin Transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
9316810 .. 9319282
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340820.1

Sequence Viewer

Length: 1776 bp
ATGATTTATACATCAATTTCTTATGAGAATCCATGGGCAACTGCAATCAATCCAAAAGTGATGAAGCTTTCAAGAAAGCAACCACAACATCCTTTTCACTTAAAACCCATCATTCGTTGTCACCGCCAAAACCCAGATAACACCACCATACACAACCCCAAACAACCCAAAATCCAGCTCAAAGATCCCATCTTGGTCACCCCAACAACGACTCAAGTTGTTTACAGAAAAGCCAAGAAAAACAGGGCCAATGTGGAAAGGAGAGAACTTCCCAAATTGGGAAGTCAACAAATGATGATTTTGTGTGGATTTGGGTATTGGGTTCAAGGCTTTAGGTGCTTTCCGTGGTTGGCTTTGAACTTTCACATGGCTCACAATCTTAATATGCACCCTTCAATATTGCAACTTGTACAACATTCTGGTAATCTTCCCATGGTGGCTAAGCCCTTGTATGGACTCCTCTCTGATGCTTTTTATATTGGTGGTGCTCATAGAATTCCTTATGTTTCCATTGGAGTGCTTGACCTTAAAAAGCGTATCTCCTTTCGTTTGAAAGTTGTAACAGTGCTAAAGTCAACCCAGAAAGTAGAAAGCGCTGAGTCTGATATTTCAAACTTCTCAGTTCTTCTACAGGTCTTGTCTTGGGGATCACTAGCACTGGTTCCAGTTGCAGCTAAGGCCCTTCCAACCCTTATGGCATGTGTTCTTCTCAGTAATCTTGGAGCATCAATTACAGAAGTAGCTAAGGATGCTCTTGTTGCAGAATATGGCCAGCAACACAGGATGAAAGGCCTCCAGTCATATGCGTTCATGGCATTAGCTGCTGGTGGAATCCTTGGGAACTTAGTAGGTGGATATTTCTTAATGAAAGCACCACCCCGAAAGATGTTTCTCCTATTTTCAGTTTTACTTTCGGCTCAACTTGCAATTTCATCGAGAATAAGAGAGGAATCTCTTGGTTTACCACAATTGTCAGACCAGAGTCTTGCAGGGAAACCAATCTTGGAAAGTCTAAGGAAACAAATGTCGGATCTAATGATGGGAATTCAAGAGCAAAGCATTGTTCGTCCACTTACTTGGATTGTAGCTTCTATAGCCATGGTCCCGGTTCTGTCAGGCTCCATCTTTTGCTATCAAACACAATGTCTAAATCTTGATCTTTCGGTCATTGGCATGTCTCGAGTGATTGGCCAGTTGATGCTTCTTTCCACTACCGTACTTTACGACCGTTATTGGAAACAAGTTCCAATGAGGAAGTTGGTTGGTATTGTGCAGTTTGTGTATGCCTTTTCCCTTCTTCTCGACTTTGTTTTAGTAAGACAGATCAATCTCAGACTGGGGATTCCGAATGAGGTTTTTGTTCTTTGTTTTTCGGGATTGGCAGAAACAATTGCACAGTTCAAGCTCTTACCTTTCTCAGTCCTGTTTGCCCATTTATGTCCTCGAGGTTGTGAAGGATCTCTCACTGCTTTCTTAGCTTCAGCCTTGATTTTTTCATCAATAGTTAGCGGGTTTTTAGGTGTTGGATTGGCTTCTCTGATTGGAGTAACAGCTGGTGACTACTCAAGCCTTCCTTTGGGGATTCTGGTACAGTTTCTTGCGGCTTTACTTCCCTTGGGATGGATTCATCATTTACCCGCGTCAGAAGCTATTGTTGGGAAGGAGAGGAAGAAAAGTTTAAGTAGGAGGAGTCAGAAAAATAGAAGGGTTGGTAGAGTGGTTTACGATTCAGTATTTATCTACAGGCGAGAGAGAGAATCAGAAGCAGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

591

Amino Acids

65.65

Weight (kDa)

9.88

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 109 - 174 3.9e-17 BT1 family
BT1 PF03092 207 - 559 1.8e-91 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1443
AccII CGCG 1 cut(s) 1640
AciI CCGC 4 cut(s) 124, 1509, 1601, 1638
AclWI GGATC 4 cut(s) 179, 655, 1038, 1465
AcoI YGGCCR 2 cut(s) 769, 1189
AcsI RAATTY 2 cut(s) 495, 1044
AcuI CTGAAG 1 cut(s) 1464
AfaI GTAC 3 cut(s) 411, 1218, 1590
AfeI AGCGCT 1 cut(s) 595
AfiI CCNNNNNNNGG 4 cut(s) 278, 452, 1576, 1620
AgsI TTSAA 8 cut(s) 72, 326, 358, 396, 553, 612, 1049, 1402
AjuI GAANNNNNNNTTGG 4 cut(s) 986, 1018, 1638, 1670
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 1182
AlwI GGATC 4 cut(s) 179, 655, 1038, 1465
Ama87I CYCGRG 2 cut(s) 1179, 1443
Aor51HI AGCGCT 1 cut(s) 595
AoxI GGCC 5 cut(s) 246, 678, 769, 790, 1189
ApeKI GCWGC 2 cut(s) 671, 821
ApoI RAATTY 2 cut(s) 495, 1044
ArsI GACNNNNNNTTYG 2 cut(s) 1129, 1161
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 246, 679, 1102
AsuC2I CCSGG 1 cut(s) 1106
AsuHPI GGTGA 3 cut(s) 113, 190, 1568
AvaI CYCGRG 2 cut(s) 1179, 1443
AvaII GGWCC 1 cut(s) 1102
BalI TGGCCA 2 cut(s) 771, 1191
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 683, 808
BccI CCATC 5 cut(s) 116, 197, 1033, 1130, 1614
BcgI CGANNNNNNTGC 2 cut(s) 915, 949
BcnI CCSGG 1 cut(s) 1106
BcoDI GTCTC 1 cut(s) 1182
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 3 cut(s) 629, 1092, 1741
BfoI RGCGCY 1 cut(s) 597
BisI GCNGC 3 cut(s) 672, 822, 1602
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 673, 823, 1603
Bme1390I CCNGG 1 cut(s) 1106
Bme18I GGWCC 1 cut(s) 1102
BmeT110I CYCGRG 2 cut(s) 1179, 1443
BmgT120I GGNCC 3 cut(s) 246, 679, 1102
BmiI GGNNCC 3 cut(s) 663, 1104, 1120
BmrFI CCNGG 1 cut(s) 1106
BmrI ACTGGG 1 cut(s) 1346
BmsI GCATC 4 cut(s) 457, 734, 739, 1188
BmuI ACTGGG 1 cut(s) 1346
BoxI GACNNNNGTC 1 cut(s) 981
BpmI CTGGAG 1 cut(s) 779
Bpu10I CCTNAGC 2 cut(s) 675, 744
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 198, 1549
BpuMI CCSGG 1 cut(s) 1106
BsaJI CCNNGG 6 cut(s) 32, 344, 432, 835, 1098, 1614
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 452, 1576, 1620
Bse1I ACTGG 5 cut(s) 663, 665, 796, 1192, 1341
BseDI CCNNGG 6 cut(s) 32, 344, 432, 835, 1098, 1614
BseGI GGATG 4 cut(s) 88, 754, 789, 1625
BseLI CCNNNNNNNGG 4 cut(s) 278, 452, 1576, 1620
BseMII CTCAG 5 cut(s) 588, 633, 724, 1345, 1431
BseNI ACTGG 5 cut(s) 663, 665, 796, 1192, 1341
BseRI GAGGAG 2 cut(s) 449, 1702
BseXI GCAGC 2 cut(s) 683, 808
BsgI GTGCAG 1 cut(s) 1292
Bsh1236I CGCG 1 cut(s) 1640
Bsh1285I CGRYCG 1 cut(s) 1228
BshFI GGCC 5 cut(s) 248, 680, 771, 792, 1191
BsiEI CGRYCG 1 cut(s) 1228
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 1179, 1443
BsiSI CCGG 1 cut(s) 1106
BslFI GGGAC 1 cut(s) 1088
BslI CCNNNNNNNGG 4 cut(s) 278, 452, 1576, 1620
BsmAI GTCTC 1 cut(s) 1182
BsmFI GGGAC 1 cut(s) 1088
BsnI GGCC 5 cut(s) 248, 680, 771, 792, 1191
BsoBI CYCGRG 2 cut(s) 1179, 1443
Bsp1286I GDGCHC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 409
Bsp143I GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 3 cut(s) 32, 432, 1098
BspACI CCGC 4 cut(s) 124, 1509, 1601, 1638
BspANI GGCC 5 cut(s) 248, 680, 771, 792, 1191
BspCNI CTCAG 5 cut(s) 589, 632, 723, 1344, 1430
BspFNI CGCG 1 cut(s) 1640
BspLI GGNNCC 3 cut(s) 663, 1104, 1120
BspPI GGATC 4 cut(s) 179, 655, 1038, 1465
BsrGI TGTACA 1 cut(s) 409
BsrI ACTGG 5 cut(s) 663, 665, 796, 1192, 1341
BssECI CCNNGG 6 cut(s) 32, 344, 432, 835, 1098, 1614
BssMI GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
BssT1I CCWWGG 5 cut(s) 32, 432, 835, 1098, 1614
Bst4CI ACNGT 5 cut(s) 565, 1216, 1229, 1398, 1593
BstAPI GCANNNNNTGC 1 cut(s) 821
BstAUI TGTACA 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 773
BstDSI CCRYGG 4 cut(s) 32, 344, 432, 1098
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 4 cut(s) 88, 754, 789, 1625
BstFNI CGCG 1 cut(s) 1640
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 6 cut(s) 187, 650, 1033, 1159, 1326, 1460
BstMAI GTCTC 1 cut(s) 1182
BstMBI GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
BstMCI CGRYCG 1 cut(s) 1228
BstNSI RCATGY 2 cut(s) 702, 1177
BstPAI GACNNNNGTC 1 cut(s) 981
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 1104
BstSFI CTRYAG 3 cut(s) 629, 1092, 1741
BstUI CGCG 1 cut(s) 1640
BstV1I GCAGC 2 cut(s) 683, 808
BstX2I RGATCY 3 cut(s) 184, 1030, 1457
BstXI CCANNNNNNTGG 1 cut(s) 1077
BstYI RGATCY 3 cut(s) 184, 1030, 1457
BsuRI GGCC 5 cut(s) 248, 680, 771, 792, 1191
BtgI CCRYGG 4 cut(s) 32, 344, 432, 1098
BtsCI GGATG 4 cut(s) 88, 754, 789, 1625
BtsI GCAGTG 1 cut(s) 1464
BtsIMutI CAGTG 3 cut(s) 570, 656, 1464
Cac8I GCNNGC 1 cut(s) 773
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 3 cut(s) 246, 679, 1102
CseI GACGC 1 cut(s) 1629
Csp6I GTAC 3 cut(s) 410, 1217, 1589
CviAII CATG 7 cut(s) 33, 367, 433, 699, 811, 1099, 1174
CviQI GTAC 3 cut(s) 410, 1217, 1589
DpnI GATC 6 cut(s) 186, 649, 1032, 1158, 1325, 1459
DpnII GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
EaeI YGGCCR 2 cut(s) 769, 1189
Eco130I CCWWGG 5 cut(s) 32, 432, 835, 1098, 1614
Eco147I AGGCCT 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 1102
Eco47III AGCGCT 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 1464
Eco88I CYCGRG 2 cut(s) 1179, 1443
Eco91I GGTNACC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 679
EcoO65I GGTNACC 1 cut(s) 196
EcoRI GAATTC 2 cut(s) 495, 1044
EcoT14I CCWWGG 5 cut(s) 32, 432, 835, 1098, 1614
ErhI CCWWGG 5 cut(s) 32, 432, 835, 1098, 1614
FaeI CATG 7 cut(s) 36, 370, 436, 702, 814, 1102, 1177
FalI AAGNNNNNCTT 2 cut(s) 1558, 1590
FaqI GGGAC 1 cut(s) 1088
FatI CATG 7 cut(s) 32, 366, 432, 698, 810, 1098, 1173
FauI CCCGC 2 cut(s) 1502, 1645
FauNDI CATATG 1 cut(s) 802
Fnu4HI GCNGC 3 cut(s) 672, 822, 1602
FokI GGATG 4 cut(s) 75, 761, 796, 1632
Fsp4HI GCNGC 3 cut(s) 672, 822, 1602
FspBI CTAG 1 cut(s) 653
GlaI GCGC 1 cut(s) 595
GluI GCNGC 3 cut(s) 672, 822, 1602
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 5 cut(s) 248, 680, 771, 792, 1191
HapII CCGG 1 cut(s) 1106
HgaI GACGC 1 cut(s) 1629
HhaI GCGC 1 cut(s) 596
Hin1II CATG 7 cut(s) 36, 370, 436, 702, 814, 1102, 1177
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 2 cut(s) 287, 576
HindII GTYRAC 2 cut(s) 287, 576
HindIII AAGCTT 1 cut(s) 65
HpaII CCGG 1 cut(s) 1106
HphI GGTGA 3 cut(s) 113, 190, 1568
Hpy166II GTNNAC 6 cut(s) 223, 287, 576, 962, 1070, 1723
Hpy188III TCNNGA 7 cut(s) 72, 936, 1049, 1154, 1179, 1301, 1374
Hpy8I GTNNAC 6 cut(s) 223, 287, 576, 962, 1070, 1723
HpyAV CCTTC 7 cut(s) 402, 692, 1304, 1448, 1580, 1654, 1698
HpyCH4III ACNGT 5 cut(s) 565, 1216, 1229, 1398, 1593
HpyCH4V TGCA 9 cut(s) 44, 388, 403, 671, 761, 926, 989, 1273, 1394
Hsp92II CATG 7 cut(s) 36, 370, 436, 702, 814, 1102, 1177
HspAI GCGC 1 cut(s) 594
Kzo9I GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
LmnI GCTCC 2 cut(s) 722, 1124
Lsp1109I GCAGC 2 cut(s) 683, 808
LweI GCATC 4 cut(s) 457, 734, 739, 1188
MaeI CTAG 1 cut(s) 653
MaeIII GTNAC 5 cut(s) 119, 196, 559, 1546, 1556
MalI GATC 6 cut(s) 186, 649, 1032, 1158, 1325, 1459
MboI GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
MboII GAAGA 5 cut(s) 419, 617, 698, 1289, 1681
MfeI CAATTG 2 cut(s) 968, 1389
MflI RGATCY 3 cut(s) 184, 1030, 1457
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 2 cut(s) 771, 1191
MluCI AATT 8 cut(s) 15, 275, 495, 729, 927, 968, 1044, 1389
MluNI TGGCCA 2 cut(s) 771, 1191
MlyI GAGTC 5 cut(s) 205, 450, 608, 991, 1699
MmeI TCCRAC 3 cut(s) 710, 1008, 1504
MnlI CCTC 9 cut(s) 470, 803, 940, 1245, 1345, 1439, 1452, 1659, 1680
Mox20I TGGCCA 2 cut(s) 771, 1191
MscI TGGCCA 2 cut(s) 771, 1191
MseI TTAA 5 cut(s) 101, 381, 528, 863, 1679
MslI CAYNNNNRTG 2 cut(s) 515, 1172
Msp20I TGGCCA 2 cut(s) 771, 1191
MspA1I CMGCKG 1 cut(s) 1553
MspI CCGG 1 cut(s) 1106
MspR9I CCNGG 1 cut(s) 1106
MunI CAATTG 2 cut(s) 968, 1389
MvnI CGCG 1 cut(s) 1640
NciI CCSGG 1 cut(s) 1106
NcoI CCATGG 3 cut(s) 32, 432, 1098
NdeI CATATG 1 cut(s) 802
NdeII GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
NlaIII CATG 7 cut(s) 36, 370, 436, 702, 814, 1102, 1177
NlaIV GGNNCC 3 cut(s) 663, 1104, 1120
NmuCI GTSAC 3 cut(s) 119, 196, 1556
NspI RCATGY 2 cut(s) 702, 1177
PaeR7I CTCGAG 2 cut(s) 1179, 1443
PceI AGGCCT 1 cut(s) 792
PfeI GAWTC 8 cut(s) 28, 831, 950, 1342, 1582, 1624, 1727, 1757
PkrI GCNGC 3 cut(s) 673, 823, 1603
PleI GAGTC 5 cut(s) 205, 450, 607, 990, 1698
PpsI GAGTC 5 cut(s) 205, 450, 607, 990, 1698
PshAI GACNNNNGTC 1 cut(s) 981
PspEI GGTNACC 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 663, 1104, 1120
PspPI GGNCC 3 cut(s) 246, 679, 1102
PspXI VCTCGAGB 1 cut(s) 1443
PsuI RGATCY 3 cut(s) 184, 1030, 1457
PvuII CAGCTG 1 cut(s) 1553
RsaI GTAC 3 cut(s) 411, 1218, 1590
RsaNI GTAC 3 cut(s) 410, 1217, 1589
RseI CAYNNNNRTG 2 cut(s) 515, 1172
SaqAI TTAA 5 cut(s) 101, 381, 528, 863, 1679
SatI GCNGC 3 cut(s) 672, 822, 1602
Sau3AI GATC 6 cut(s) 184, 647, 1030, 1156, 1323, 1457
Sau96I GGNCC 3 cut(s) 246, 679, 1102
SchI GAGTC 5 cut(s) 205, 450, 608, 991, 1699
ScrFI CCNGG 1 cut(s) 1106
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 4 cut(s) 457, 734, 739, 1188
SfcI CTRYAG 3 cut(s) 629, 1092, 1741
Sfr274I CTCGAG 2 cut(s) 1179, 1443
SinI GGWCC 1 cut(s) 1102
SlaI CTCGAG 2 cut(s) 1179, 1443
SmiMI CAYNNNNRTG 2 cut(s) 515, 1172
SmlI CTYRAG 4 cut(s) 213, 1179, 1443, 1564
SmoI CTYRAG 4 cut(s) 213, 1179, 1443, 1564
Sse9I AATT 8 cut(s) 15, 275, 495, 729, 927, 968, 1044, 1389
SseBI AGGCCT 1 cut(s) 792
SsiI CCGC 4 cut(s) 124, 1509, 1601, 1638
SspI AATATT 1 cut(s) 399
SspMI CTAG 1 cut(s) 653
StuI AGGCCT 1 cut(s) 792
StyD4I CCNGG 1 cut(s) 1104
StyI CCWWGG 5 cut(s) 32, 432, 835, 1098, 1614
TaaI ACNGT 5 cut(s) 565, 1216, 1229, 1398, 1593
TaqI TCGA 4 cut(s) 935, 1180, 1302, 1444
TaqII GACCGA 1 cut(s) 1153
TasI AATT 8 cut(s) 15, 275, 495, 729, 927, 968, 1044, 1389
TatI WGTACW 1 cut(s) 409
TauI GCSGC 1 cut(s) 1604
TfiI GAWTC 8 cut(s) 28, 831, 950, 1342, 1582, 1624, 1727, 1757
Tru1I TTAA 5 cut(s) 101, 381, 528, 863, 1679
Tru9I TTAA 5 cut(s) 101, 381, 528, 863, 1679
TscAI CASTG 3 cut(s) 570, 663, 1471
TseFI GTSAC 3 cut(s) 119, 196, 1556
TseI GCWGC 2 cut(s) 671, 821
Tsp45I GTSAC 3 cut(s) 119, 196, 1556
TspDTI ATGAA 7 cut(s) 77, 799, 800, 881, 921, 1485, 1616
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 3 cut(s) 570, 663, 1471
VpaK11BI GGWCC 1 cut(s) 1102
XapI RAATTY 2 cut(s) 495, 1044
XceI RCATGY 2 cut(s) 702, 1177
XhoI CTCGAG 2 cut(s) 1179, 1443
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.