AT2G36210

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015350
Physical Location & Seq
Reverse (-)
15186040 .. 15186852
813 bp
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UTR
Exon/CDS
Intron
AT2G36210.1

Sequence Viewer

Length: 408 bp
ATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCAAAGAAAATGAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCGGAGTCAACTTATAACGAGTCTCTTCTGATGAATGAGGCGGACGAGGCGGCGATGATGGCGTCAAAGACGCCGACGGGGACGTTTGCGGTGTACGTAGGGGAAGAGCGCGTGAAGCGCGTGGTACCAACAAGCTACTTGAATCATCCTCTCTTCAGGATGCTCCTCGACAAGTCTCACGACGAGTTTCTCTGTTTCGAGCAGAAGGTTATGTTGGTGGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTTAACGCCGTCGAGTCTTGTAATGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

5.2

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 117 4e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
Acc65I GGTACC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 214
AccII CGCG 2 cut(s) 201, 210
AciI CCGC 5 cut(s) 75, 87, 131, 140, 179
AcuI CTGAAG 1 cut(s) 229
AcyI GRCGYC 2 cut(s) 152, 161
AfaI GTAC 2 cut(s) 185, 216
AgsI TTSAA 2 cut(s) 28, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 2 cut(s) 20, 225
AluI AGCT 2 cut(s) 20, 225
Alw26I GTCTC 2 cut(s) 117, 270
ApeKI GCWGC 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 19
Asp718I GGTACC 1 cut(s) 214
AspLEI GCGC 2 cut(s) 201, 210
AspS9I GGNCC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 117, 270
BfaI CTAG 1 cut(s) 5
BisI GCNGC 3 cut(s) 88, 141, 319
BlsI GCNGC 3 cut(s) 89, 142, 320
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 216, 312
BmsI GCATC 2 cut(s) 63, 240
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 152, 161
BseGI GGATG 2 cut(s) 235, 255
BseRI GAGGAG 2 cut(s) 93, 245
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 201, 210
BshNI GGYRCC 1 cut(s) 214
BslFI GGGAC 2 cut(s) 184, 296
BsmAI GTCTC 2 cut(s) 117, 270
BsmFI GGGAC 2 cut(s) 184, 296
BspACI CCGC 5 cut(s) 75, 87, 131, 140, 179
BspFNI CGCG 2 cut(s) 201, 210
BspLI GGNNCC 2 cut(s) 216, 312
BspQI GCTCTTC 2 cut(s) 44, 189
BspT107I GGYRCC 1 cut(s) 214
BssNI GRCGYC 2 cut(s) 152, 161
Bst6I CTCTTC 4 cut(s) 44, 120, 189, 248
BstACI GRCGYC 2 cut(s) 152, 161
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 235, 255
BstFNI CGCG 2 cut(s) 201, 210
BstHHI GCGC 2 cut(s) 201, 210
BstMAI GTCTC 2 cut(s) 117, 270
BstMWI GCNNNNNNNGC 4 cut(s) 137, 149, 205, 207
BstSNI TACGTA 1 cut(s) 187
BstUI CGCG 2 cut(s) 201, 210
BstV1I GCAGC 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 235, 255
CfoI GCGC 2 cut(s) 201, 210
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 2 cut(s) 141, 169
Csp6I GTAC 2 cut(s) 184, 215
CviJI RGCY 4 cut(s) 20, 90, 225, 321
CviKI_1 RGCY 4 cut(s) 20, 90, 225, 321
CviQI GTAC 2 cut(s) 184, 215
DdeI CTNAG 1 cut(s) 34
Eam1104I CTCTTC 4 cut(s) 44, 120, 189, 248
EarI CTCTTC 4 cut(s) 44, 120, 189, 248
EciI GGCGGA 1 cut(s) 146
Eco105I TACGTA 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 229
FaiI YATR 3 cut(s) 105, 302, 406
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 2 cut(s) 184, 296
Fnu4HI GCNGC 3 cut(s) 88, 141, 319
FokI GGATG 2 cut(s) 222, 262
Fsp4HI GCNGC 3 cut(s) 88, 141, 319
FspBI CTAG 1 cut(s) 5
GlaI GCGC 2 cut(s) 200, 209
GluI GCNGC 3 cut(s) 88, 141, 319
HgaI GACGC 2 cut(s) 141, 169
HhaI GCGC 2 cut(s) 201, 210
Hin1I GRCGYC 2 cut(s) 152, 161
Hin6I GCGC 2 cut(s) 199, 208
HinP1I GCGC 2 cut(s) 199, 208
HincII GTYRAC 2 cut(s) 99, 346
HindII GTYRAC 2 cut(s) 99, 346
HinfI GANTC 4 cut(s) 95, 110, 232, 356
HpaI GTTAAC 1 cut(s) 346
Hpy166II GTNNAC 3 cut(s) 99, 184, 346
Hpy188I TCNGA 2 cut(s) 94, 120
Hpy188III TCNNGA 3 cut(s) 28, 247, 269
Hpy8I GTNNAC 3 cut(s) 99, 184, 346
Hpy99I CGWCG 5 cut(s) 67, 70, 169, 275, 356
HpyAV CCTTC 3 cut(s) 34, 77, 289
HpyCH4IV ACGT 3 cut(s) 173, 186, 339
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 149, 205, 207
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 3 cut(s) 173, 186, 339
Hsp92I GRCGYC 2 cut(s) 152, 161
HspAI GCGC 2 cut(s) 199, 208
KpnI GGTACC 1 cut(s) 218
KspAI GTTAAC 1 cut(s) 346
LguI GCTCTTC 2 cut(s) 44, 189
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 2 cut(s) 63, 240
MaeI CTAG 1 cut(s) 5
MaeII ACGT 3 cut(s) 173, 186, 339
MboII GAAGA 4 cut(s) 61, 107, 206, 235
MlyI GAGTC 3 cut(s) 104, 119, 365
MnlI CCTC 7 cut(s) 71, 121, 130, 249, 266, 332, 388
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 1 cut(s) 345
MvnI CGCG 2 cut(s) 201, 210
MwoI GCNNNNNNNGC 4 cut(s) 137, 149, 205, 207
NlaIV GGNNCC 2 cut(s) 216, 312
PciSI GCTCTTC 2 cut(s) 44, 189
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 3 cut(s) 89, 142, 320
PleI GAGTC 3 cut(s) 103, 118, 364
PpsI GAGTC 3 cut(s) 103, 118, 364
Ppu21I YACGTR 1 cut(s) 187
PsiI TTATAA 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 216, 312
PspPI GGNCC 1 cut(s) 310
RsaI GTAC 2 cut(s) 185, 216
RsaNI GTAC 2 cut(s) 184, 215
SapI GCTCTTC 2 cut(s) 44, 189
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 3 cut(s) 88, 141, 319
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 3 cut(s) 104, 119, 365
SetI ASST 6 cut(s) 22, 176, 189, 227, 300, 342
SfaNI GCATC 2 cut(s) 63, 240
SinI GGWCC 1 cut(s) 310
SnaBI TACGTA 1 cut(s) 187
SsiI CCGC 5 cut(s) 75, 87, 131, 140, 179
SspMI CTAG 1 cut(s) 5
TaiI ACGT 3 cut(s) 176, 189, 342
TaqI TCGA 5 cut(s) 258, 288, 354, 375, 393
TauI GCSGC 2 cut(s) 90, 143
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseI GCWGC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 62, 137
TspGWI ACGGA 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.