Rw3G017390

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015350
Physical Location & Seq
Forward (+)
18795624 .. 18796007
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017390.1

Sequence Viewer

Length: 384 bp
ATGCTTGGGAAGAAGATGGTGAGCTTCAAAAACCTAGCCAAGAAGGTGAAGGCTGTGGGGACAACTGGTAGAGAGCCATCACACTATGAATGTCTGCTAAGAGACTCGGAGCAAGGAGGGTCTCCTCCAACCAAACCACCAACTGGGTTCCTGGCAGTTTACGTAGGCGAAGAGCGCCAGAGGTTTGTGGTTCCAACAAGCTTTCTTTCTCATCCACTCTTCAAGATGCTGCTGGAGAAAGCGTACAATGAGTTTGGTTTTCAGCAGAGAAATGGACTCGTGGTTCCTTGCAGCGTCTCAGCTTTCGAAGAGGTTGTCAGTGCTATGGAATGCAGTCACGGGCAGTTTGATTTTGGAGAACTTGTTGAGGAGTTTATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

127

Amino Acids

14.14

Weight (kDa)

6.3

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 29 - 108 9.9e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 28, 223
AjnI CCWGG 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 3 cut(s) 24, 201, 302
AluI AGCT 3 cut(s) 24, 201, 302
Alw26I GTCTC 3 cut(s) 96, 126, 301
ApeKI GCWGC 2 cut(s) 229, 291
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 31, 58
AsuII TTCGAA 1 cut(s) 306
BauI CACGAG 1 cut(s) 278
BbvI GCAGC 2 cut(s) 216, 303
BccI CCATC 2 cut(s) 10, 85
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 96, 126, 301
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 2 cut(s) 230, 292
BlsI GCNGC 2 cut(s) 231, 293
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 149, 192, 285
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 126
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 348, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 70, 148
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 70, 148
BseRI GAGGAG 2 cut(s) 114, 383
BseXI GCAGC 2 cut(s) 216, 303
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 96, 126, 301
BsmBI CGTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 311
BspHI TCATGA 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 149, 192, 285
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 2 cut(s) 70, 148
BssSI CACGAG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 3 cut(s) 165, 224, 303
BstBAI YACGTR 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 98, 298
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstMAI GTCTC 3 cut(s) 96, 126, 301
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 216, 303
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 325
CciI TCATGA 1 cut(s) 380
CfoI GCGC 1 cut(s) 177
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 381
CviJI RGCY 6 cut(s) 24, 38, 53, 76, 201, 302
CviKI_1 RGCY 6 cut(s) 24, 38, 53, 76, 201, 302
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 98, 298
Eam1104I CTCTTC 3 cut(s) 165, 224, 303
EarI CTCTTC 3 cut(s) 165, 224, 303
Eco105I TACGTA 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 1 cut(s) 384
FaiI YATR 3 cut(s) 87, 326, 382
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 230, 292
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 230, 292
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 176
GluI GCNGC 2 cut(s) 230, 292
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 178
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 384
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 104, 276
HphI GGTGA 2 cut(s) 31, 58
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 223, 381
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 37, 43
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 291, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 98, 298
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 384
HspAI GCGC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 51, 129, 137, 164, 191, 218
Lsp1109I GCAGC 2 cut(s) 216, 303
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 335
MboII GAAGA 5 cut(s) 22, 25, 182, 211, 320
MlyI GAGTC 2 cut(s) 98, 270
MmeI TCCRAC 2 cut(s) 152, 218
MnlI CCTC 5 cut(s) 110, 135, 174, 304, 361
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 174
NlaIII CATG 1 cut(s) 384
NlaIV GGNNCC 3 cut(s) 149, 192, 285
NmuCI GTSAC 1 cut(s) 335
NspV TTCGAA 1 cut(s) 306
PagI TCATGA 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 2 cut(s) 231, 293
PleI GAGTC 2 cut(s) 98, 270
PpsI GAGTC 2 cut(s) 98, 270
Ppu21I YACGTR 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 149, 192, 285
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 230, 292
SchI GAGTC 2 cut(s) 98, 270
ScrFI CCNGG 1 cut(s) 152
SetI ASST 8 cut(s) 26, 36, 48, 165, 185, 203, 304, 315
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 306
SnaBI TACGTA 1 cut(s) 163
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 306
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 229, 291
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 102, 369
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 143
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.