pycom12g02640

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015350
Physical Location & Seq
Forward (+)
2379117 .. 2379500
384 bp
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UTR
Exon/CDS
Intron
pycom12g02640.1

Sequence Viewer

Length: 384 bp
ATGCTTCGAAAAAAGATGGTGAGTTTCAAAGAGCTAGCAAAGAAAGTGAAGGTTATGGGAGGAGCTGAGAGAGAGCCATCACACCATGAGTATCTGCTGAGGGATTCAGAGCAAGGAGGCTCTCCGTCGGCGCAAACGCCGACTGGGTTTTTGGCCCTGTATGTAGGGGAGGAGCGCCAGAGGTTTCTGGTGCCAACAAGCTCCCTTTCTCATCCACTCTTCAAGATGCTGCTGGAGAAAGCTTACAACGAGTACGGCTTTCAGCAGAGATATGGGCTTGTGGTGCCCTGCAGCGTCTCAGCTTTTGAGGAGGTTTTGAATGCTGTGGAATGCAGCAACGGCAAGTTTGATTTTGGTGAACTTGCTGAGGAGTTTATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

5.94

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 108 1.4e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 190, 283
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 3 cut(s) 28, 223, 319
AluBI AGCT 5 cut(s) 34, 65, 201, 242, 302
AluI AGCT 5 cut(s) 34, 65, 201, 242, 302
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 229, 291, 333
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AspLEI GCGC 2 cut(s) 133, 177
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 31, 368
AsuII TTCGAA 1 cut(s) 7
AsuNHI GCTAGC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 2 cut(s) 190, 283
BbvCI CCTCAGC 2 cut(s) 98, 366
BbvI GCAGC 3 cut(s) 216, 303, 345
BccI CCATC 2 cut(s) 10, 85
BceAI ACGGC 2 cut(s) 271, 355
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 3 cut(s) 230, 292, 334
BlsI GCNGC 3 cut(s) 231, 293, 335
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 192, 285
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 2 cut(s) 98, 366
Bpu14I TTCGAA 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 4 cut(s) 57, 89, 312, 357
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 4 cut(s) 75, 185, 323, 383
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 3 cut(s) 216, 303, 345
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 2 cut(s) 190, 283
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsmI GAATGC 2 cut(s) 325, 335
BsnI GGCC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 288
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 4 cut(s) 58, 90, 311, 358
BspHI TCATGA 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 192, 285
BspMAI CTGCAG 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 38
BspT104I TTCGAA 1 cut(s) 7
BspT107I GGYRCC 2 cut(s) 190, 283
BsrI ACTGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 4 cut(s) 66, 98, 298, 366
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 133, 177
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 283, 339
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 216, 303, 345
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 380
CfoI GCGC 2 cut(s) 133, 177
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 86, 381
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 66, 98, 298, 366
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 2 cut(s) 89, 384
FaiI YATR 5 cut(s) 56, 87, 162, 273, 382
FatI CATG 2 cut(s) 85, 380
Fnu4HI GCNGC 3 cut(s) 230, 292, 334
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 230, 292, 334
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 132, 176
GluI GCNGC 3 cut(s) 230, 292, 334
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 283
HhaI GCGC 2 cut(s) 133, 177
Hin1II CATG 2 cut(s) 89, 384
Hin6I GCGC 2 cut(s) 131, 175
HinP1I GCGC 2 cut(s) 131, 175
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 1 cut(s) 104
HphI GGTGA 2 cut(s) 31, 368
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 223, 381
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 291, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 339
HpyF3I CTNAG 4 cut(s) 66, 98, 298, 366
Hsp92II CATG 2 cut(s) 89, 384
HspAI GCGC 2 cut(s) 131, 175
LmnI GCTCC 3 cut(s) 62, 172, 206
LpnPI CCDG 6 cut(s) 129, 170, 173, 191, 218, 301
Lsp1109I GCAGC 3 cut(s) 216, 303, 345
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 35
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 288
MnlI CCTC 8 cut(s) 53, 93, 110, 163, 174, 301, 304, 361
Mva1269I GAATGC 2 cut(s) 325, 335
MwoI GCNNNNNNNGC 2 cut(s) 283, 339
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 89, 384
NlaIV GGNNCC 2 cut(s) 192, 285
NspV TTCGAA 1 cut(s) 7
PagI TCATGA 1 cut(s) 380
PctI GAATGC 2 cut(s) 325, 335
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 231, 293, 335
PspN4I GGNNCC 2 cut(s) 192, 285
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 293
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 3 cut(s) 230, 292, 334
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 36, 54, 67, 185, 203, 244, 304, 315
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 7
SspMI CTAG 1 cut(s) 35
TaqI TCGA 1 cut(s) 7
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 3 cut(s) 229, 291, 333
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 114
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.