FvH4_6g19170

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015350
Physical Location & Seq
Forward (+)
12680212 .. 12681296
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19170.t1

Sequence Viewer

Length: 399 bp
ATGCTTGGGAAGAAGATGGTGAGCTTCAAAAAACTAGCCAAGAAGGTGAAGTCTGTAGGTGGAACTGGTAGAGTAGTCGACCCTTATTCCCACCATGAATGTCTGCTAAGAGACTCAGACGTTCAAGGAGGTAATTCTCCTTCAACAAAAACCCCAACTGGGTTCCTGGCAGTTTACGTTGGCGAAGAGCGCCAGAGGTTCGTGGTTCCAACAAGCTTTCTTTCTCATCCACTCTTCAAGATGCTGCTGGAGAAAGCCTACAATGAGTTTGGTTTTCAGCAGAGAAATGGACTCGTGGTTCCTTGCAGCGTCTCGGCTTTCGAAGAGGTTGTCAATGCTGTGGAATGCAGTAATGGGCAGTTTGATTTTGGAGAACTTGTTGAGGAGTTTATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

6.82

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 45 - 113 2.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 4 cut(s) 28, 125, 144, 238
AjnI CCWGG 1 cut(s) 165
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 2 cut(s) 24, 216
AluI AGCT 2 cut(s) 24, 216
Alw26I GTCTC 2 cut(s) 105, 316
ApeKI GCWGC 2 cut(s) 244, 306
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AspLEI GCGC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 31, 58
AsuII TTCGAA 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
BauI CACGAG 1 cut(s) 293
BbvI GCAGC 2 cut(s) 231, 318
BccI CCATC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 105, 316
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 2 cut(s) 245, 307
BlsI GCNGC 2 cut(s) 246, 308
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 164, 207, 300
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 231
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 70, 163
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 70, 163
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 231, 318
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 105, 316
BsmBI CGTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 395
BspLI GGNNCC 3 cut(s) 164, 207, 300
BspQI GCTCTTC 1 cut(s) 180
BspT104I TTCGAA 1 cut(s) 321
BsrI ACTGG 2 cut(s) 70, 163
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 3 cut(s) 180, 239, 318
BstBI TTCGAA 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 107, 115
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 105, 316
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 231, 318
BtsCI GGATG 1 cut(s) 226
CciI TCATGA 1 cut(s) 395
CfoI GCGC 1 cut(s) 192
CseI GACGC 1 cut(s) 298
CviAII CATG 2 cut(s) 95, 396
CviJI RGCY 5 cut(s) 24, 38, 216, 257, 317
CviKI_1 RGCY 5 cut(s) 24, 38, 216, 257, 317
DdeI CTNAG 2 cut(s) 107, 115
Eam1104I CTCTTC 3 cut(s) 180, 239, 318
EarI CTCTTC 3 cut(s) 180, 239, 318
EcoRII CCWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 2 cut(s) 98, 399
FaiI YATR 2 cut(s) 96, 397
FatI CATG 2 cut(s) 94, 395
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 245, 307
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 245, 307
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 245, 307
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 193
HgaI GACGC 1 cut(s) 298
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 98, 399
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 2 cut(s) 113, 291
HphI GGTGA 2 cut(s) 31, 58
Hpy166II GTNNAC 2 cut(s) 79, 175
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 238, 396
Hpy8I GTNNAC 2 cut(s) 79, 175
HpyAV CCTTC 2 cut(s) 37, 150
HpyCH4IV ACGT 2 cut(s) 120, 177
HpyCH4V TGCA 2 cut(s) 306, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 2 cut(s) 107, 115
HpySE526I ACGT 2 cut(s) 120, 177
Hsp92II CATG 2 cut(s) 98, 399
HspAI GCGC 1 cut(s) 190
LguI GCTCTTC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 51, 144, 152, 179, 206, 233
Lsp1109I GCAGC 2 cut(s) 231, 318
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 120, 177
MboII GAAGA 5 cut(s) 22, 25, 197, 226, 335
MluCI AATT 1 cut(s) 133
MlyI GAGTC 2 cut(s) 107, 285
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 4 cut(s) 122, 189, 319, 376
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 189
NlaIII CATG 2 cut(s) 98, 399
NlaIV GGNNCC 3 cut(s) 164, 207, 300
NmeAIII GCCGAG 1 cut(s) 293
NspV TTCGAA 1 cut(s) 321
PagI TCATGA 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 180
PctI GAATGC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 246, 308
PleI GAGTC 2 cut(s) 107, 285
PpsI GAGTC 2 cut(s) 107, 285
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 164, 207, 300
SalI GTCGAC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 180
SatI GCNGC 2 cut(s) 245, 307
SchI GAGTC 2 cut(s) 107, 285
ScrFI CCNGG 1 cut(s) 167
SetI ASST 9 cut(s) 26, 48, 61, 123, 133, 180, 200, 218, 330
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 321
Sse9I AATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 165
TaiI ACGT 2 cut(s) 123, 180
TaqI TCGA 2 cut(s) 78, 321
TasI AATT 1 cut(s) 133
TseI GCWGC 2 cut(s) 244, 306
TspDTI ATGAA 2 cut(s) 111, 384
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.