MD12G1027600.v1.1

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015350
Physical Location & Seq
Forward (+)
3084745 .. 3085128
384 bp
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UTR
Exon/CDS
Intron
MD12G1027600.v1.1.491

Sequence Viewer

Length: 384 bp
ATGCTTGGAAAAAAGATGGTGAGTTTCAAAGAGCTAGCAAAGAAAGTGAAGGTTATGGGAGGAGCTGAGAGAGAGCCATCACACCATGAGTATCTGCTGAGGAATTCGGAGCAAGGAGGCTCTCCGTCAGCGAAAACCCCGACTGGATTTTTGGCCTTGTATGTAGGCGAGGAGCGCCAGAGGTTTCTGGTACCAACAAGCTCCCTTTCTCATCCACTCTTCAAGATGCTGCTGGAGAAAGCTTACAATGAGTACGGCTTTCAGCAGAGATATGGGCTTGTGGTGCCCTGCAGCGTCTCAGCTTTTGAGGAGGTTTTGAATGCTGTGGAATGCAGCAATGGCAAGTTTGATTTTGGTGAACTTGTTGAGGAGTTTATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

128

Amino Acids

14.23

Weight (kDa)

6.31

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 13 - 108 1.2e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 190
AccB1I GGYRCC 2 cut(s) 190, 283
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 2 cut(s) 192, 254
AgsI TTSAA 3 cut(s) 28, 223, 319
AluBI AGCT 5 cut(s) 34, 65, 201, 242, 302
AluI AGCT 5 cut(s) 34, 65, 201, 242, 302
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 229, 291, 333
ApoI RAATTY 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp718I GGTACC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 31, 368
AsuNHI GCTAGC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 2 cut(s) 190, 283
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 216, 303, 345
BccI CCATC 2 cut(s) 10, 85
BceAI ACGGC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 3 cut(s) 230, 292, 334
BlsI GCNGC 3 cut(s) 231, 293, 335
BmiI GGNNCC 2 cut(s) 192, 285
BmsI GCATC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 343
BseGI GGATG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 3 cut(s) 57, 89, 312
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 4 cut(s) 75, 185, 323, 383
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 3 cut(s) 216, 303, 345
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 2 cut(s) 190, 283
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsmI GAATGC 2 cut(s) 325, 335
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 288
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 3 cut(s) 58, 90, 311
BspHI TCATGA 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 192, 285
BspMAI CTGCAG 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 38
BspT107I GGYRCC 2 cut(s) 190, 283
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 66, 98, 298
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 174, 283, 339
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 216, 303, 345
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 380
CfoI GCGC 1 cut(s) 177
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 191, 253
CviAII CATG 2 cut(s) 86, 381
CviQI GTAC 2 cut(s) 191, 253
DdeI CTNAG 3 cut(s) 66, 98, 298
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 2 cut(s) 89, 384
FaiI YATR 5 cut(s) 56, 87, 162, 273, 382
FatI CATG 2 cut(s) 85, 380
Fnu4HI GCNGC 3 cut(s) 230, 292, 334
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 230, 292, 334
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 176
GluI GCNGC 3 cut(s) 230, 292, 334
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 89, 384
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 240
HphI GGTGA 2 cut(s) 31, 368
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 223, 381
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 291, 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 283, 339
HpyF3I CTNAG 3 cut(s) 66, 98, 298
Hsp92II CATG 2 cut(s) 89, 384
HspAI GCGC 1 cut(s) 175
KpnI GGTACC 1 cut(s) 194
LmnI GCTCC 4 cut(s) 62, 109, 172, 206
LpnPI CCDG 5 cut(s) 129, 173, 191, 218, 301
Lsp1109I GCAGC 3 cut(s) 216, 303, 345
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 35
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 103
MnlI CCTC 8 cut(s) 53, 93, 110, 163, 174, 301, 304, 361
Mva1269I GAATGC 2 cut(s) 325, 335
MwoI GCNNNNNNNGC 3 cut(s) 174, 283, 339
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 89, 384
NlaIV GGNNCC 2 cut(s) 192, 285
PagI TCATGA 1 cut(s) 380
PctI GAATGC 2 cut(s) 325, 335
PkrI GCNGC 3 cut(s) 231, 293, 335
PspN4I GGNNCC 2 cut(s) 192, 285
PstI CTGCAG 1 cut(s) 293
RsaI GTAC 2 cut(s) 192, 254
RsaNI GTAC 2 cut(s) 191, 253
SatI GCNGC 3 cut(s) 230, 292, 334
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 36, 54, 67, 185, 203, 244, 304, 315
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 289
Sse9I AATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 35
TasI AATT 1 cut(s) 103
TseI GCWGC 3 cut(s) 229, 291, 333
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 114
XapI RAATTY 1 cut(s) 103
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.