MD14G1028000.v1.1

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015350
Physical Location & Seq
Forward (+)
2503144 .. 2503530
387 bp
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UTR
Exon/CDS
Intron
MD14G1028000.v1.1.491

Sequence Viewer

Length: 387 bp
ATGCTAGGAAAAAAGATGGTGAGTTTCAAAAAGCTAGCAAAGAAAGTGAAGGTTATGGGAGGAGCTGAGAGGGAGCCATCATACCATGAGTGTCTACTGATCAGAGATTCAGAGCAAGGAGGCTCTCCGTCGTCGAAAACCCCGATCGGGTTTCTGGCCTTGTATGTAGGGGAGGAGCTCCAGAGGTTTGTGGTGCCAACAAGCTCCCTTTCTCATCCACTCTTCAAGATGTTGCTGGAGAAGGCTTACAATGAGTACGGCTTTCAGCAGAGAAATGGCCTTGTGGTGCCCTGCAGCGTCTCAGCTTTTGAAGAGGTTTTGAATGCTGTGGAATGCAGCAATGGCAAGTTTGATTTTGGTGAACTAGTTGAGGAGTTTATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

129

Amino Acids

14.23

Weight (kDa)

6.13

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 11 - 109 4e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 193, 286
AccI GTMKAC 1 cut(s) 94
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 4 cut(s) 28, 226, 311, 322
AhlI ACTAGT 1 cut(s) 364
AluBI AGCT 5 cut(s) 34, 65, 178, 204, 305
AluI AGCT 5 cut(s) 34, 65, 178, 204, 305
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 304
AoxI GGCC 2 cut(s) 156, 277
ApeKI GCWGC 2 cut(s) 294, 336
AsuHPI GGTGA 2 cut(s) 31, 371
AsuNHI GCTAGC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 291
BanI GGYRCC 2 cut(s) 193, 286
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 306, 348
BccI CCATC 2 cut(s) 10, 85
BceAI ACGGC 1 cut(s) 274
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 3 cut(s) 5, 35, 365
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 2 cut(s) 295, 337
BlsI GCNGC 2 cut(s) 296, 338
BmiI GGNNCC 3 cut(s) 75, 195, 288
BmtI GCTAGC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 164, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 346
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 57, 315
BseRI GAGGAG 3 cut(s) 75, 188, 386
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 2 cut(s) 306, 348
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 158, 279
BshNI GGYRCC 2 cut(s) 193, 286
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmI GAATGC 2 cut(s) 328, 338
BsnI GGCC 2 cut(s) 158, 279
Bsp1286I GDGCHC 2 cut(s) 180, 291
Bsp143I GATC 2 cut(s) 99, 144
BspANI GGCC 2 cut(s) 158, 279
BspCNI CTCAG 2 cut(s) 58, 314
BspLI GGNNCC 3 cut(s) 75, 195, 288
BspMAI CTGCAG 1 cut(s) 296
BspOI GCTAGC 1 cut(s) 38
BspT107I GGYRCC 2 cut(s) 193, 286
BsrDI GCAATG 1 cut(s) 346
BssMI GATC 2 cut(s) 99, 144
Bst6I CTCTTC 2 cut(s) 227, 306
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 66, 301
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 102, 147
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 99, 144
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 306, 348
BsuRI GGCC 2 cut(s) 158, 279
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 36
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 86
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 66, 301
DpnI GATC 2 cut(s) 101, 146
DpnII GATC 2 cut(s) 99, 144
Eam1104I CTCTTC 2 cut(s) 227, 306
EarI CTCTTC 2 cut(s) 227, 306
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 56, 82, 87, 165
FatI CATG 1 cut(s) 85
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 295, 337
FokI GGATG 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 295, 337
FspBI CTAG 3 cut(s) 5, 35, 365
GluI GCNGC 2 cut(s) 295, 337
GsuI CTGGAG 2 cut(s) 164, 257
HaeIII GGCC 2 cut(s) 158, 279
HgaI GACGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 89
HinfI GANTC 1 cut(s) 107
HphI GGTGA 2 cut(s) 31, 371
Hpy166II GTNNAC 2 cut(s) 95, 362
Hpy188I TCNGA 2 cut(s) 104, 112
Hpy188III TCNNGA 3 cut(s) 181, 226, 384
Hpy8I GTNNAC 2 cut(s) 95, 362
Hpy99I CGWCG 2 cut(s) 133, 136
HpyAV CCTTC 2 cut(s) 43, 235
HpyCH4V TGCA 2 cut(s) 294, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 2 cut(s) 66, 301
Hsp92II CATG 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 99, 144
LmnI GCTCC 5 cut(s) 62, 73, 175, 183, 209
LpnPI CCDG 4 cut(s) 140, 194, 221, 304
Lsp1109I GCAGC 2 cut(s) 306, 348
MaeI CTAG 3 cut(s) 5, 35, 365
MalI GATC 2 cut(s) 101, 146
MboI GATC 2 cut(s) 99, 144
MboII GAAGA 2 cut(s) 214, 323
MhlI GDGCHC 2 cut(s) 180, 291
MnlI CCTC 7 cut(s) 53, 63, 113, 166, 177, 307, 364
Mva1269I GAATGC 2 cut(s) 328, 338
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 2 cut(s) 99, 144
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 3 cut(s) 75, 195, 288
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 2 cut(s) 328, 338
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 296, 338
Ple19I CGATCG 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 75, 195, 288
PstI CTGCAG 1 cut(s) 296
PvuI CGATCG 1 cut(s) 147
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SacI GAGCTC 1 cut(s) 180
SatI GCNGC 2 cut(s) 295, 337
Sau3AI GATC 2 cut(s) 99, 144
SduI GDGCHC 2 cut(s) 180, 291
SetI ASST 8 cut(s) 36, 54, 67, 180, 188, 206, 307, 318
SfcI CTRYAG 1 cut(s) 292
SpeI ACTAGT 1 cut(s) 364
SspMI CTAG 3 cut(s) 5, 35, 365
SstI GAGCTC 1 cut(s) 180
TaqI TCGA 1 cut(s) 134
TfiI GAWTC 1 cut(s) 107
TseI GCWGC 2 cut(s) 294, 336
TspGWI ACGGA 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 94
XspI CTAG 3 cut(s) 5, 35, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.