Rroxscaffold_6G00407380

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015350
Physical Location & Seq
Reverse (-)
30058921 .. 30061988
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407380.1

Sequence Viewer

Length: 531 bp
ATGAGGACCGACCCGACTCGCAGAGGTGGTGGTCGGGGAGATGAATCGGACGGTAGTGGTCGAGAGTCAATATCCGACCTCCTACATCCTTCAACCTCTCCCACCTCTCCTCTATTCTCTTCTCTTCTGTCTCAAAACCTCACAAAAAATGCTTGGGAAGAAGATGGTGAGCTTCAAAACCTAGCCAAGAAGGTGAAGGCTGTGGGGGCAACTGGTAGAGAGCCATCACACTATGAATGTCTGCTAGGAGACTCGGAGCAAGGAGGGTCTCCTCCAACCAAACCACCAACTGGGTTCCTGGCAGTTTACGTAGGCGAAGAGCGCCAGAGGTTTGTGGTTCCAACAAGCATTCTTTCTCATCCACTCTTCAAGATGCTGCTGGAGAAAGCGTACAATGAGTTTGGTTTTCAGCAGAGAAATGGACTCGTGGTTCCTTGCAGCGTCTCGGCTTTCGAAGAGGTTGTCAGTGCTGTGGAATGCAGTAACGGGCAGTTTGATTTTGGAGAACTTGTTGAGGAGTTTATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

176

Amino Acids

19.13

Weight (kDa)

4.84

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 79 - 157 5.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36210
fragaria_vesca FvH4_6g19170
malus_domestica MD12G1027600.v1.1 MD14G1028000.v1.1
prunus_persica Prupe.7G104000_v2.0.a1
pyrus_communis pycom12g02640
rosa_chinensis RchiOBHm_Chr3g0474301
rosa_laevigata RLG00000023934
rosa_multiflora Rmu_sc0004507.1_g000013
rosa_roxburghii Rroxscaffold_6G00407380
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190600 Rh3BG219800 Rh3CG215000 Rh3DG215500
rosa_wichuraiana Rw3G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 93, 176, 370
AjnI CCWGG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 4 cut(s) 135, 243, 273, 448
ApeKI GCWGC 2 cut(s) 376, 438
ArsI GACNNNNNNTTYG 2 cut(s) 447, 479
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 2 cut(s) 179, 205
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 6
BauI CACGAG 1 cut(s) 425
BbvI GCAGC 2 cut(s) 363, 450
BccI CCATC 2 cut(s) 158, 232
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 4 cut(s) 135, 243, 273, 448
BfaI CTAG 2 cut(s) 182, 245
BfoI RGCGCY 1 cut(s) 325
BisI GCNGC 2 cut(s) 377, 439
BlsI GCNGC 2 cut(s) 378, 440
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 3 cut(s) 296, 339, 432
BmrFI CCNGG 1 cut(s) 299
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 217, 295
BseBI CCWGG 1 cut(s) 299
BseGI GGATG 2 cut(s) 85, 358
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 217, 295
BseRI GAGGAG 3 cut(s) 99, 261, 530
BseXI GCAGC 2 cut(s) 363, 450
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 4 cut(s) 135, 243, 273, 448
BsmBI CGTCTC 1 cut(s) 448
BsmI GAATGC 2 cut(s) 348, 482
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 453
BspHI TCATGA 1 cut(s) 527
BspLI GGNNCC 3 cut(s) 296, 339, 432
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 217, 295
BssSI CACGAG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 5 cut(s) 124, 129, 312, 371, 450
BstBAI YACGTR 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 453
BstF5I GGATG 2 cut(s) 85, 358
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstMAI GTCTC 4 cut(s) 135, 243, 273, 448
BstMWI GCNNNNNNNGC 2 cut(s) 206, 321
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 363, 450
BtsCI GGATG 2 cut(s) 85, 358
BtsIMutI CAGTG 1 cut(s) 472
CciI TCATGA 1 cut(s) 527
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 528
CviJI RGCY 5 cut(s) 172, 185, 200, 223, 449
CviKI_1 RGCY 5 cut(s) 172, 185, 200, 223, 449
CviQI GTAC 1 cut(s) 391
Eam1104I CTCTTC 5 cut(s) 124, 129, 312, 371, 450
EarI CTCTTC 5 cut(s) 124, 129, 312, 371, 450
Eco105I TACGTA 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 1 cut(s) 531
FaiI YATR 2 cut(s) 234, 529
FatI CATG 1 cut(s) 527
Fnu4HI GCNGC 2 cut(s) 377, 439
FokI GGATG 2 cut(s) 72, 345
Fsp4HI GCNGC 2 cut(s) 377, 439
FspBI CTAG 2 cut(s) 182, 245
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 377, 439
GsuI CTGGAG 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 325
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 531
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 5 cut(s) 16, 44, 65, 251, 423
HphI GGTGA 2 cut(s) 179, 205
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 49, 76, 256
Hpy188III TCNNGA 3 cut(s) 62, 370, 528
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 99, 184, 190
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 438, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 321
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 531
HspAI GCGC 1 cut(s) 322
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 198, 276, 284, 311, 338, 365
Lsp1109I GCAGC 2 cut(s) 363, 450
LweI GCATC 1 cut(s) 363
MaeI CTAG 2 cut(s) 182, 245
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 482
MboII GAAGA 7 cut(s) 111, 116, 170, 173, 329, 358, 467
MlyI GAGTC 4 cut(s) 10, 74, 245, 417
MmeI TCCRAC 3 cut(s) 99, 299, 365
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 2 cut(s) 348, 482
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 206, 321
NlaIII CATG 1 cut(s) 531
NlaIV GGNNCC 3 cut(s) 296, 339, 432
NmeAIII GCCGAG 1 cut(s) 425
NspV TTCGAA 1 cut(s) 453
PagI TCATGA 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 2 cut(s) 348, 482
PfeI GAWTC 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 290
PkrI GCNGC 2 cut(s) 378, 440
PleI GAGTC 4 cut(s) 10, 73, 245, 417
PpsI GAGTC 4 cut(s) 10, 73, 245, 417
Ppu21I YACGTR 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 296, 339, 432
PspPI GGNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 312
SatI GCNGC 2 cut(s) 377, 439
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 4 cut(s) 10, 74, 245, 417
ScrFI CCNGG 1 cut(s) 299
SfaNI GCATC 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 6
SnaBI TACGTA 1 cut(s) 310
SspMI CTAG 2 cut(s) 182, 245
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 61, 453
TaqII GACCGA 1 cut(s) 23
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 472
TseI GCWGC 2 cut(s) 376, 438
TspDTI ATGAA 3 cut(s) 57, 249, 516
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 6
XspI CTAG 2 cut(s) 182, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.