Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Reverse (-)

15294303 .. 15294857

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAAGGAACCTCCAAAGACAATGGCGGCCGCCACCCTTTGTACAGGGGAGTAAGGCAGCGAAAGAACTCAAACAAATGGGTTTCTGAGATCCGTGAGCCGAGAAAACCTAACCGTATCTGGTTAGGAACATTCTCTACCCCCGAGATGGCGGCAATAGCCTATGACGTGGCAGCTCTAGCCCTCAAAGGCAGTCAAGCTGAGCTCAACTTCCCAAACTCAGTTTCCTCTTTGCCTGCCCCAACCTCCATGTCTCCAGCAGACATCCAAGCAGCAGCCGCTTCGGCCGCTGCTGCTTTTGGTGCTGCTAGGGATGCGATTGTTATGGCAAATAATAACAGCCAAACAAGTGGTGTGGCTTGCATGAATAGTAGTTATGATAATACAAATATGAATGGATTCATGGACGAGGATTTGGTATTCGACATGCCTAATGTGCTCATGAATATGGCTGAAGGAATGCTTCTTAGCCCCCCTCGTCCTACTGTCTTTGATGCTGCTTACGACGCTGATGGTTTTCCTGGAGGAGACGATTACTTGTGGAATTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

184

Amino Acids

19.79

Weight (kDa)

4.77

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	13 - 64	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	27, 31, 152, 279, 288
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	2 cut(s)	28, 285
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	208, 240
AluBI	AGCT	3 cut(s)	176, 200, 205
AluI	AGCT	3 cut(s)	176, 200, 205
Alw21I	GWGCWC	2 cut(s)	207, 441
Alw26I	GTCTC	2 cut(s)	258, 522
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	2 cut(s)	28, 285
ApeKI	GCWGC	8 cut(s)	58, 173, 272, 275, 290, 293, 305, 497
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	207, 441
BbvI	GCAGC	8 cut(s)	70, 185, 277, 280, 284, 287, 292, 484
BccI	CCATC	2 cut(s)	142, 506
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	258, 522
BfaI	CTAG	2 cut(s)	179, 309
BglI	GCCNNNNNGGC	1 cut(s)	284
BlpI	GCTNAGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	522
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	304, 484
BpmI	CTGGAG	2 cut(s)	240, 543
Bpu1102I	GCTNAGC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	264, 319
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	78, 192, 234
BseRI	GAGGAG	1 cut(s)	540
BseX3I	CGGCCG	2 cut(s)	28, 285
BseXI	GCAGC	8 cut(s)	70, 185, 277, 280, 284, 287, 292, 484
Bsh1285I	CGRYCG	2 cut(s)	31, 288
BshFI	GGCC	2 cut(s)	30, 287
BsiEI	CGRYCG	2 cut(s)	31, 288
BsiHKAI	GWGCWC	2 cut(s)	207, 441
BsiHKCI	CYCGRG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	258, 522
BsmBI	CGTCTC	1 cut(s)	522
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	30, 287
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	207, 441
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	90
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	5 cut(s)	27, 31, 152, 279, 288
BspANI	GGCC	2 cut(s)	30, 287
BspCNI	CTCAG	3 cut(s)	79, 193, 233
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	42
BssMI	GATC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	116, 487
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	237, 361
BstDEI	CTNAG	4 cut(s)	87, 201, 220, 467
BstF5I	GGATG	2 cut(s)	264, 319
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	258, 522
BstMBI	GATC	1 cut(s)	90
BstMCI	CGRYCG	2 cut(s)	31, 288
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	520
BstV1I	GCAGC	8 cut(s)	70, 185, 277, 280, 284, 287, 292, 484
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	90
BstZI	CGGCCG	2 cut(s)	28, 285
BsuRI	GGCC	2 cut(s)	30, 287
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	264, 319
Cac8I	GCNNGC	2 cut(s)	237, 361
CciI	TCATGA	1 cut(s)	441
CciNI	GCGGCCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	43
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	6 cut(s)	250, 364, 403, 427, 442, 552
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	4 cut(s)	87, 201, 220, 467
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	2 cut(s)	28, 285
EagI	CGGCCG	2 cut(s)	28, 285
Ecl136II	GAGCTC	1 cut(s)	205
EclXI	CGGCCG	2 cut(s)	28, 285
Eco24I	GRGCYC	1 cut(s)	207
Eco52I	CGGCCG	2 cut(s)	28, 285
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	6 cut(s)	253, 367, 406, 430, 445, 555
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	6 cut(s)	249, 363, 402, 426, 441, 551
FokI	GGATG	2 cut(s)	251, 326
FriOI	GRGCYC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	179, 309
GsuI	CTGGAG	2 cut(s)	240, 543
HaeIII	GGCC	2 cut(s)	30, 287
HgaI	GACGC	1 cut(s)	515
Hin1II	CATG	6 cut(s)	253, 367, 406, 430, 445, 555
HinfI	GANTC	1 cut(s)	399
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	2 cut(s)	116, 487
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	4, 363
HpyF3I	CTNAG	4 cut(s)	87, 201, 220, 467
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	253, 367, 406, 430, 445, 555
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	31, 106, 249, 270, 507, 534
Lsp1109I	GCAGC	8 cut(s)	70, 185, 277, 280, 284, 287, 292, 484
LweI	GCATC	2 cut(s)	304, 484
MaeI	CTAG	2 cut(s)	179, 309
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	207, 441
MluCI	AATT	1 cut(s)	544
MnlI	CCTC	7 cut(s)	22, 194, 238, 256, 403, 486, 518
MroXI	GAANNNNTTC	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	522
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	6 cut(s)	253, 367, 406, 430, 445, 555
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	126
NotI	GCGGCCGC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	430
PagI	TCATGA	1 cut(s)	441
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	10
PsrI	GAACNNNNNNTAC	2 cut(s)	121, 153
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	2 cut(s)	207, 441
SetI	ASST	7 cut(s)	14, 112, 171, 178, 202, 207, 248
SfaNI	GCATC	2 cut(s)	304, 484
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	5 cut(s)	27, 31, 152, 279, 288
SspMI	CTAG	2 cut(s)	179, 309
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	116, 487
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	423
TasI	AATT	1 cut(s)	544
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	5 cut(s)	30, 33, 155, 281, 290
TfiI	GAWTC	1 cut(s)	399
TseI	GCWGC	8 cut(s)	58, 173, 272, 275, 290, 293, 305, 497
TspDTI	ATGAA	4 cut(s)	380, 391, 407, 458
TspGWI	ACGGA	1 cut(s)	83
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	2 cut(s)	179, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.