Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Forward (+)

11817696 .. 11821178

Gene Structure 3483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCATGCATGCCGCATCGTGTTTGTCATCGATCGGCAACATACACCATGCAATACACCACAAACAGTTCTAAATCAAGCAGCAGCTCCACTACTGGTCCGGGGCGTCACCCGACCTATCGGGGTGTAAGGCGCCGGAGCAATGGAAAATGGGTGTCAGAAATTCGAGAGCCAAAGAAGCCTAATAGAATCTGGCTAGGCACATTTCTCACACCAGAAATGGCTGCGGTTGCCTATGATGTCGCTGCACTAGCTCTCAAGGGTCAAGACGCTGAGCTCAACTTCCCCAACTCGGCATCTTCATTGCCTGTGCCTGCTTCCAACTCATCAAGAGATATCCAGGCCGCAGCAGCCTCTGCTGCTGCTGCTATAAGTGCAGCTGCCGCGGCCATGGGAGTAGGAAATCTTGCTACCTCTAGCTGGCCGAGTACTGAGAGCAGTCATGGGCATATGCTAAATGATCACGAATTTGTCGATGAGGATCTGATCTTCGATATGCCTAATGTTCTAATGAATATGGCAGAGGGAATGCTTCTTAGTCCTCCGCGCTTGGACATAGCAGGTGATCATGATGCATTAGCCACTGAAGAACATGGCACCCTTTGGAAGTTTAATTATTTTCCAGGATTTGCCCTCATTGTTGGGCTGTGCAATTCGGGTACTTCCCTCGCCTGTTTTGCTCCAGATGCTTCTCGATCAGCCTTGCAAAACGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

240

Amino Acids

25.52

Weight (kDa)

6.43

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	39 - 88	1e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	551
AccB1I	GGYRCC	2 cut(s)	132, 596
AccII	CGCG	2 cut(s)	386, 547
AciI	CCGC	6 cut(s)	14, 227, 345, 384, 386, 545
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	2 cut(s)	387, 422
AcsI	RAATTY	2 cut(s)	162, 467
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	106, 133
AfaI	GTAC	2 cut(s)	430, 661
AfiI	CCNNNNNNNGG	2 cut(s)	292, 420
AjnI	CCWGG	2 cut(s)	339, 622
AluBI	AGCT	5 cut(s)	87, 254, 277, 380, 420
AluI	AGCT	5 cut(s)	87, 254, 277, 380, 420
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	342, 387, 422
ApoI	RAATTY	2 cut(s)	162, 467
AspLEI	GCGC	2 cut(s)	135, 549
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	101, 575
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	2 cut(s)	132, 596
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	341, 624
BclI	TGATCA	2 cut(s)	460, 565
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	3 cut(s)	197, 251, 417
BfoI	RGCGCY	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	551
BlpI	GCTNAGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	102, 341, 624
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	134, 598
BmrFI	CCNGG	3 cut(s)	102, 341, 624
BmsI	GCATC	4 cut(s)	25, 305, 562, 676
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	106, 133
BsaJI	CCNNGG	3 cut(s)	101, 384, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 420
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	2 cut(s)	148, 302
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	341, 624
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	101, 384, 390
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	292, 420
BseMI	GCAATG	2 cut(s)	148, 302
BseMII	CTCAG	2 cut(s)	264, 423
BseNI	ACTGG	1 cut(s)	100
BsgI	GTGCAG	2 cut(s)	231, 396
Bsh1236I	CGCG	2 cut(s)	386, 547
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	3 cut(s)	344, 389, 424
BshNI	GGYRCC	2 cut(s)	132, 596
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	101, 136
BslI	CCNNNNNNNGG	2 cut(s)	292, 420
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	344, 389, 424
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	6 cut(s)	14, 227, 345, 384, 386, 545
BspANI	GGCC	3 cut(s)	344, 389, 424
BspCNI	CTCAG	2 cut(s)	265, 424
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	386, 547
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	134, 598
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	1 cut(s)	489
BspT107I	GGYRCC	2 cut(s)	132, 596
BsrDI	GCAATG	2 cut(s)	148, 302
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	101, 384, 390
BssMI	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
BssNI	GRCGYC	2 cut(s)	106, 133
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	341, 624
Bst4CI	ACNGT	1 cut(s)	68
BstACI	GRCGYC	2 cut(s)	106, 133
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	7, 11, 315, 422
BstDEI	CTNAG	3 cut(s)	273, 432, 536
BstDSI	CCRYGG	2 cut(s)	384, 390
BstFNI	CGCG	2 cut(s)	386, 547
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 549
BstKTI	GATC	6 cut(s)	35, 463, 484, 489, 568, 698
BstMBI	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
BstMCI	CGRYCG	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	341, 624
BstNSI	RCATGY	2 cut(s)	9, 13
BstSCI	CCNGG	3 cut(s)	100, 339, 622
BstUI	CGCG	2 cut(s)	386, 547
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	344, 389, 424
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	2 cut(s)	384, 390
BtsIMutI	CAGTG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	4 cut(s)	7, 11, 315, 422
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	2 cut(s)	135, 549
Cfr13I	GGNCC	1 cut(s)	98
Cfr42I	CCGCGG	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	2 cut(s)	95, 278
Csp6I	GTAC	2 cut(s)	429, 660
CviAII	CATG	7 cut(s)	6, 10, 49, 391, 443, 569, 593
CviQI	GTAC	2 cut(s)	429, 660
DdeI	CTNAG	3 cut(s)	273, 432, 536
DinI	GGCGCC	1 cut(s)	134
DpnI	GATC	6 cut(s)	34, 462, 483, 488, 567, 697
DpnII	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
EaeI	YGGCCR	2 cut(s)	387, 422
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	339, 622
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	2 cut(s)	11, 577
EcoT38I	GRGCYC	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	7 cut(s)	9, 13, 52, 394, 446, 572, 596
FatI	CATG	7 cut(s)	5, 9, 48, 390, 442, 568, 592
FauNDI	CATATG	1 cut(s)	450
FbaI	TGATCA	2 cut(s)	460, 565
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	3 cut(s)	197, 251, 417
GlaI	GCGC	2 cut(s)	134, 548
GsuI	CTGGAG	1 cut(s)	666
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	344, 389, 424
HapII	CCGG	2 cut(s)	101, 136
HgaI	GACGC	2 cut(s)	95, 278
HhaI	GCGC	2 cut(s)	135, 549
Hin1I	GRCGYC	2 cut(s)	106, 133
Hin1II	CATG	7 cut(s)	9, 13, 52, 394, 446, 572, 596
Hin6I	GCGC	2 cut(s)	133, 547
HinP1I	GCGC	2 cut(s)	133, 547
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	101, 136
HphI	GGTGA	2 cut(s)	101, 575
Hpy188I	TCNGA	2 cut(s)	160, 486
Hpy188III	TCNNGA	7 cut(s)	167, 266, 330, 464, 569, 683, 693
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	7 cut(s)	9, 52, 248, 377, 575, 651, 706
HpyF3I	CTNAG	3 cut(s)	273, 432, 536
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	2 cut(s)	106, 133
Hsp92II	CATG	7 cut(s)	9, 13, 52, 394, 446, 572, 596
HspAI	GCGC	2 cut(s)	133, 547
KasI	GGCGCC	1 cut(s)	132
Ksp22I	TGATCA	2 cut(s)	460, 565
KspI	CCGCGG	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
LmnI	GCTCC	3 cut(s)	92, 138, 685
LweI	GCATC	4 cut(s)	25, 305, 562, 676
MaeI	CTAG	3 cut(s)	197, 251, 417
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	6 cut(s)	34, 462, 483, 488, 567, 697
MboI	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
MboII	GAAGA	3 cut(s)	291, 481, 599
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	4 cut(s)	162, 467, 613, 652
Mly113I	GGCGCC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	364, 424, 472, 517, 552, 644, 677
Mph1103I	ATGCAT	2 cut(s)	11, 577
MseI	TTAA	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	380, 386
MspI	CCGG	2 cut(s)	101, 136
MspR9I	CCNGG	3 cut(s)	102, 341, 624
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	341, 624
MvnI	CGCG	2 cut(s)	386, 547
NarI	GGCGCC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
NlaIII	CATG	7 cut(s)	9, 13, 52, 394, 446, 572, 596
NlaIV	GGNNCC	2 cut(s)	134, 598
NmeAIII	GCCGAG	2 cut(s)	272, 450
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	2 cut(s)	11, 577
NspI	RCATGY	2 cut(s)	9, 13
PaeI	GCATGC	2 cut(s)	9, 13
PagI	TCATGA	1 cut(s)	568
PaqCI	CACCTGC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	622
Ple19I	CGATCG	1 cut(s)	35
PluTI	GGCGCC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	339, 622
PspGI	CCWGG	2 cut(s)	339, 622
PspN4I	GGNNCC	2 cut(s)	134, 598
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	481
PvuI	CGATCG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	430, 661
RsaNI	GTAC	2 cut(s)	429, 660
SacI	GAGCTC	1 cut(s)	279
SacII	CCGCGG	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	612
Sau3AI	GATC	6 cut(s)	32, 460, 481, 486, 565, 695
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	102, 341, 624
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	89, 119, 256, 279, 382, 416, 422, 565, 714
SfaNI	GCATC	4 cut(s)	25, 305, 562, 676
SfoI	GGCGCC	1 cut(s)	134
Sfr303I	CCGCGG	1 cut(s)	387
SgrBI	CCGCGG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SphI	GCATGC	2 cut(s)	9, 13
Sse9I	AATT	4 cut(s)	162, 467, 613, 652
SsiI	CCGC	6 cut(s)	14, 227, 345, 384, 386, 545
SspDI	GGCGCC	1 cut(s)	132
SspMI	CTAG	3 cut(s)	197, 251, 417
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	100, 339, 622
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	5 cut(s)	31, 166, 474, 492, 694
TasI	AATT	4 cut(s)	162, 467, 613, 652
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	4 cut(s)	16, 347, 386, 389
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	291, 527
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	2 cut(s)	162, 467
XceI	RCATGY	2 cut(s)	9, 13
XspI	CTAG	3 cut(s)	197, 251, 417
ZrmI	AGTACT	1 cut(s)	430
Zsp2I	ATGCAT	2 cut(s)	11, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.