Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Forward (+)

18188796 .. 18189413

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCATGCCTTATCGTACTTTGTTTTCATCGATCGACAACACACACCATGCAATACACCACAAACAGTTCTGAATCAAGCAGCAGCTCCAGTACAGGTCCGGGGCGTCACCCAACCTATCGGGGTGTAAGGCGCCGGAGCAGTGGAAAATGGGTGTCAGAAATTCGTGAGCCAAAGAAGCCTAATAGAATCTGGCTAGGCACATTTTCCACACCAGAAATGGCTGCGGTTGCGTATGATGTCGCTGCTCTGGCTCTCAAGGGTCAAGACGCTGAGCTTAACTTCCCGAACTCGGCATCTTCATTGCCTGTGCCTGCCTCCAATTCATCAAGAGATATCCAGGCCGCGGCAACCTCTGCTGCCGCTGCTATAGGGGCAGCTGCTGCGGCCATGGGAGTAGGGAATGGTGCTACTTCTACCAGGCCGAGTACTGAGAGTGGTCATGGCCATGTGCTAAATGATCATGAGTTTATCGATGAGGATCTGATCTTCGATATGCCTAATGTTTTAAGGAATATGGCAGAGGGAATGCTTCTTAGTCCTCCTCGCTTGGATATAGCTGGTGATTATGATGCATTTGCCGCTGAAGAACATGGCAACCTTTGGAAATTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

205

Amino Acids

21.87

Weight (kDa)

5.95

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	39 - 88	4e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AccII	CGCG	1 cut(s)	347
AciI	CCGC	6 cut(s)	227, 345, 347, 363, 386, 582
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	2 cut(s)	387, 445
AcsI	RAATTY	2 cut(s)	162, 608
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	106, 133
AfaI	GTAC	3 cut(s)	18, 94, 430
AfiI	CCNNNNNNNGG	2 cut(s)	292, 346
AjnI	CCWGG	2 cut(s)	339, 419
AluBI	AGCT	4 cut(s)	87, 277, 380, 560
AluI	AGCT	4 cut(s)	87, 277, 380, 560
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	4 cut(s)	342, 387, 422, 445
ApeKI	GCWGC	9 cut(s)	81, 84, 224, 245, 359, 365, 377, 380, 383
ApoI	RAATTY	2 cut(s)	162, 608
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	101, 575
AvaII	GGWCC	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	132
BbvI	GCAGC	9 cut(s)	93, 96, 211, 232, 346, 352, 367, 370, 389
BciT130I	CCWGG	2 cut(s)	341, 421
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	136
BlpI	GCTNAGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	102, 341, 421
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	3 cut(s)	102, 341, 421
BmsI	GCATC	2 cut(s)	305, 562
BpmI	CTGGAG	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	102
Bsa29I	ATCGAT	2 cut(s)	31, 474
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	106, 133
BsaJI	CCNNGG	3 cut(s)	101, 345, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 346
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	341, 421
BseCI	ATCGAT	2 cut(s)	31, 474
BseDI	CCNNGG	3 cut(s)	101, 345, 390
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	292, 346
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	264, 423
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	9 cut(s)	93, 96, 211, 232, 346, 352, 367, 370, 389
Bsh1236I	CGCG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	344, 389, 424, 447
BshNI	GGYRCC	1 cut(s)	132
BshVI	ATCGAT	2 cut(s)	31, 474
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	101, 136
BslI	CCNNNNNNNGG	2 cut(s)	292, 346
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	344, 389, 424, 447
Bsp143I	GATC	4 cut(s)	32, 460, 481, 486
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	6 cut(s)	227, 345, 347, 363, 386, 582
BspANI	GGCC	4 cut(s)	344, 389, 424, 447
BspCNI	CTCAG	2 cut(s)	265, 424
BspDI	ATCGAT	2 cut(s)	31, 474
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	489
BspT107I	GGYRCC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	3 cut(s)	101, 345, 390
BssMI	GATC	4 cut(s)	32, 460, 481, 486
BssNI	GRCGYC	2 cut(s)	106, 133
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	341, 421
Bst4CI	ACNGT	1 cut(s)	68
BstACI	GRCGYC	2 cut(s)	106, 133
BstAPI	GCANNNNNTGC	2 cut(s)	356, 383
BstC8I	GCNNGC	2 cut(s)	7, 315
BstDEI	CTNAG	3 cut(s)	273, 432, 536
BstDSI	CCRYGG	2 cut(s)	345, 390
BstFNI	CGCG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	35, 463, 484, 489
BstMBI	GATC	4 cut(s)	32, 460, 481, 486
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	9 cut(s)	178, 230, 251, 356, 365, 374, 383, 386, 581
BstNI	CCWGG	2 cut(s)	341, 421
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	100, 339, 419
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	9 cut(s)	93, 96, 211, 232, 346, 352, 367, 370, 389
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	2 cut(s)	31, 474
BsuRI	GGCC	4 cut(s)	344, 389, 424, 447
BsuTUI	ATCGAT	2 cut(s)	31, 474
BtgI	CCRYGG	2 cut(s)	345, 390
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	7, 315
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	98
Cfr42I	CCGCGG	1 cut(s)	348
ClaI	ATCGAT	2 cut(s)	31, 474
CseI	GACGC	2 cut(s)	95, 278
Csp6I	GTAC	3 cut(s)	17, 93, 429
CviAII	CATG	7 cut(s)	6, 49, 391, 443, 449, 464, 593
CviQI	GTAC	3 cut(s)	17, 93, 429
DdeI	CTNAG	3 cut(s)	273, 432, 536
DinI	GGCGCC	1 cut(s)	134
DpnI	GATC	4 cut(s)	34, 462, 483, 488
DpnII	GATC	4 cut(s)	32, 460, 481, 486
EaeI	YGGCCR	2 cut(s)	387, 445
Eco130I	CCWWGG	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	339, 419
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	577
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	7 cut(s)	9, 52, 394, 446, 452, 467, 596
FatI	CATG	7 cut(s)	5, 48, 390, 442, 448, 463, 592
FbaI	TGATCA	1 cut(s)	460
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	4 cut(s)	344, 389, 424, 447
HapII	CCGG	2 cut(s)	101, 136
HgaI	GACGC	2 cut(s)	95, 278
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	2 cut(s)	106, 133
Hin1II	CATG	7 cut(s)	9, 52, 394, 446, 452, 467, 596
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	74, 189
HpaII	CCGG	2 cut(s)	101, 136
HphI	GGTGA	2 cut(s)	101, 575
Hpy188I	TCNGA	3 cut(s)	73, 160, 486
Hpy188III	TCNNGA	5 cut(s)	167, 266, 286, 330, 464
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	52, 575
HpyF10VI	GCNNNNNNNGC	9 cut(s)	178, 230, 251, 356, 365, 374, 383, 386, 581
HpyF3I	CTNAG	3 cut(s)	273, 432, 536
Hsp92I	GRCGYC	2 cut(s)	106, 133
Hsp92II	CATG	7 cut(s)	9, 52, 394, 446, 452, 467, 596
HspAI	GCGC	1 cut(s)	133
KasI	GGCGCC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	32, 460, 481, 486
LmnI	GCTCC	2 cut(s)	92, 138
Lsp1109I	GCAGC	9 cut(s)	93, 96, 211, 232, 346, 352, 367, 370, 389
LweI	GCATC	2 cut(s)	305, 562
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	4 cut(s)	34, 462, 483, 488
MboI	GATC	4 cut(s)	32, 460, 481, 486
MboII	GAAGA	3 cut(s)	291, 481, 599
MflI	RGATCY	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	4 cut(s)	162, 322, 608, 613
MluNI	TGGCCA	1 cut(s)	447
Mly113I	GGCGCC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	328, 364, 472, 517, 552, 555
Mox20I	TGGCCA	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	3 cut(s)	279, 509, 612
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	4 cut(s)	347, 365, 380, 584
MspI	CCGG	2 cut(s)	101, 136
MspR9I	CCNGG	3 cut(s)	102, 341, 421
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	341, 421
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	9 cut(s)	178, 230, 251, 356, 365, 374, 383, 386, 581
NarI	GGCGCC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	32, 460, 481, 486
NlaIII	CATG	7 cut(s)	9, 52, 394, 446, 452, 467, 596
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	2 cut(s)	272, 450
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PagI	TCATGA	1 cut(s)	463
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	74, 189
Ple19I	CGATCG	1 cut(s)	35
PluTI	GGCGCC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	339, 419
PspGI	CCWGG	2 cut(s)	339, 419
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	481
PvuI	CGATCG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	3 cut(s)	18, 94, 430
RsaNI	GTAC	3 cut(s)	17, 93, 429
RseI	CAYNNNNRTG	1 cut(s)	447
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	279, 509, 612
Sau3AI	GATC	4 cut(s)	32, 460, 481, 486
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	102, 341, 421
SetI	ASST	8 cut(s)	89, 100, 119, 279, 356, 382, 562, 603
SfaNI	GCATC	2 cut(s)	305, 562
SfcI	CTRYAG	1 cut(s)	369
SfoI	GGCGCC	1 cut(s)	134
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	4 cut(s)	162, 322, 608, 613
SsiI	CCGC	6 cut(s)	227, 345, 347, 363, 386, 582
SspDI	GGCGCC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	100, 339, 419
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	4 cut(s)	31, 35, 474, 492
TasI	AATT	4 cut(s)	162, 322, 608, 613
TatI	WGTACW	2 cut(s)	92, 428
TauI	GCSGC	5 cut(s)	347, 350, 365, 389, 584
TfiI	GAWTC	2 cut(s)	74, 189
Tru1I	TTAA	3 cut(s)	279, 509, 612
Tru9I	TTAA	3 cut(s)	279, 509, 612
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	9 cut(s)	81, 84, 224, 245, 359, 365, 377, 380, 383
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	17, 291, 315
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	2 cut(s)	162, 608
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	197
ZrmI	AGTACT	1 cut(s)	430
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.