Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Reverse (-)

31624045 .. 31624614

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAATACACCACAAACAGTTCTGAATCAAGCAGCAGCTCCAGTACGGGTCCGGGGCGTCACCCGACCTATCGGGGTGTAAGGCGCCGGAGCAGTGGAAAATGGGTGTCAGAAATTCGTGAGCCAAAGAAGCCTAATAGAATCTGGCTAGGCACATTTTCCACACCAGAAATGGCTGCGGTTGCTTATGATGTCGCTGCTCTGGCTCTCAAGGGTAAAGACGCTGAGCTCAACTTCCCGAACTCGGCATCTTCATTGCCTGTGCCTGCCTCCAATTCATCAAGAGATATCCAGGCCGCGGCAACCTCTGCTGCCGCTGCTATAGGGGCAGCTGCCGCGGCCATGGGAGTAGGGAACGGTACTACTTCTACCAGGCCGAGTACTGAGAGTGGTCATGGCCATGTGCTAAATGATCATGAGTTTATCGATGAGGATCTGATCTTCGATATGCCCAATGTTCTAAGGAATATGGCAGAGGGAATGCTTCTTAGTCCTCCTCGCTTGGACATAGCTGGTGATCATGATGCATTTGCCGCTGAAGAACATGGCAACCTTTGGAAATTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.06

Weight (kDa)

5.84

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 72	3.7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AccII	CGCG	2 cut(s)	299, 338
AciI	CCGC	7 cut(s)	179, 297, 299, 315, 336, 338, 534
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	2 cut(s)	339, 397
AcsI	RAATTY	2 cut(s)	114, 560
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	2 cut(s)	58, 85
AfaI	GTAC	3 cut(s)	46, 361, 382
AfiI	CCNNNNNNNGG	2 cut(s)	244, 298
AjnI	CCWGG	2 cut(s)	291, 371
AluBI	AGCT	4 cut(s)	39, 229, 332, 512
AluI	AGCT	4 cut(s)	39, 229, 332, 512
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	4 cut(s)	294, 339, 374, 397
ApeKI	GCWGC	8 cut(s)	33, 36, 176, 197, 311, 317, 329, 332
ApoI	RAATTY	2 cut(s)	114, 560
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	53, 527
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	8 cut(s)	45, 48, 163, 184, 298, 304, 319, 341
BciT130I	CCWGG	2 cut(s)	293, 373
BclI	TGATCA	2 cut(s)	412, 517
BcnI	CCSGG	1 cut(s)	54
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	88
BlpI	GCTNAGC	1 cut(s)	225
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	3 cut(s)	54, 293, 373
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	51, 86
BmrFI	CCNGG	3 cut(s)	54, 293, 373
BmsI	GCATC	2 cut(s)	257, 514
BpmI	CTGGAG	1 cut(s)	25
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	54
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	2 cut(s)	58, 85
BsaJI	CCNNGG	4 cut(s)	53, 297, 336, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 298
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	293, 373
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	4 cut(s)	53, 297, 336, 342
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	244, 298
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	216, 375
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	8 cut(s)	45, 48, 163, 184, 298, 304, 319, 341
Bsh1236I	CGCG	2 cut(s)	299, 338
BshFI	GGCC	4 cut(s)	296, 341, 376, 399
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	53, 88
BslI	CCNNNNNNNGG	2 cut(s)	244, 298
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	4 cut(s)	296, 341, 376, 399
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	412, 433, 438, 517
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	7 cut(s)	179, 297, 299, 315, 336, 338, 534
BspANI	GGCC	4 cut(s)	296, 341, 376, 399
BspCNI	CTCAG	2 cut(s)	217, 376
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	299, 338
BspHI	TCATGA	2 cut(s)	415, 520
BspLI	GGNNCC	2 cut(s)	51, 86
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	53, 297, 336, 342
BssMI	GATC	4 cut(s)	412, 433, 438, 517
BssNI	GRCGYC	2 cut(s)	58, 85
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	293, 373
Bst4CI	ACNGT	2 cut(s)	20, 359
BstACI	GRCGYC	2 cut(s)	58, 85
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	4 cut(s)	225, 384, 461, 488
BstDSI	CCRYGG	3 cut(s)	297, 336, 342
BstFNI	CGCG	2 cut(s)	299, 338
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	4 cut(s)	415, 436, 441, 520
BstMBI	GATC	4 cut(s)	412, 433, 438, 517
BstMWI	GCNNNNNNNGC	9 cut(s)	130, 182, 203, 308, 317, 326, 335, 338, 533
BstNI	CCWGG	2 cut(s)	293, 373
BstSCI	CCNGG	3 cut(s)	52, 291, 371
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	2 cut(s)	299, 338
BstV1I	GCAGC	8 cut(s)	45, 48, 163, 184, 298, 304, 319, 341
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	296, 341, 376, 399
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	3 cut(s)	297, 336, 342
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	2 cut(s)	415, 520
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	50
Cfr42I	CCGCGG	2 cut(s)	300, 339
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	2 cut(s)	47, 230
Csp6I	GTAC	3 cut(s)	45, 360, 381
CviAII	CATG	6 cut(s)	343, 395, 401, 416, 521, 545
CviQI	GTAC	3 cut(s)	45, 360, 381
DdeI	CTNAG	4 cut(s)	225, 384, 461, 488
DinI	GGCGCC	1 cut(s)	86
DpnI	GATC	4 cut(s)	414, 435, 440, 519
DpnII	GATC	4 cut(s)	412, 433, 438, 517
EaeI	YGGCCR	2 cut(s)	339, 397
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	291, 371
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	86
EheI	GGCGCC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	346, 398, 404, 419, 524, 548
FatI	CATG	6 cut(s)	342, 394, 400, 415, 520, 544
FbaI	TGATCA	2 cut(s)	412, 517
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	296, 341, 376, 399
HapII	CCGG	2 cut(s)	53, 88
HgaI	GACGC	2 cut(s)	47, 230
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	2 cut(s)	58, 85
Hin1II	CATG	6 cut(s)	346, 398, 404, 419, 524, 548
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	26, 141
HpaII	CCGG	2 cut(s)	53, 88
HphI	GGTGA	2 cut(s)	53, 527
Hpy188I	TCNGA	3 cut(s)	25, 112, 438
Hpy188III	TCNNGA	5 cut(s)	119, 238, 282, 416, 521
HpyCH4III	ACNGT	2 cut(s)	20, 359
HpyCH4V	TGCA	2 cut(s)	4, 527
HpyF10VI	GCNNNNNNNGC	9 cut(s)	130, 182, 203, 308, 317, 326, 335, 338, 533
HpyF3I	CTNAG	4 cut(s)	225, 384, 461, 488
Hsp92I	GRCGYC	2 cut(s)	58, 85
Hsp92II	CATG	6 cut(s)	346, 398, 404, 419, 524, 548
HspAI	GCGC	1 cut(s)	85
KasI	GGCGCC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	412, 517
KspI	CCGCGG	2 cut(s)	300, 339
Kzo9I	GATC	4 cut(s)	412, 433, 438, 517
LmnI	GCTCC	2 cut(s)	44, 90
Lsp1109I	GCAGC	8 cut(s)	45, 48, 163, 184, 298, 304, 319, 341
LweI	GCATC	2 cut(s)	257, 514
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	4 cut(s)	414, 435, 440, 519
MboI	GATC	4 cut(s)	412, 433, 438, 517
MboII	GAAGA	3 cut(s)	243, 433, 551
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	4 cut(s)	114, 274, 560, 565
MluNI	TGGCCA	1 cut(s)	399
Mly113I	GGCGCC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	280, 316, 424, 469, 504, 507
Mox20I	TGGCCA	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	529
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	399
MspA1I	CMGCKG	5 cut(s)	299, 317, 332, 338, 536
MspI	CCGG	2 cut(s)	53, 88
MspR9I	CCNGG	3 cut(s)	54, 293, 373
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	293, 373
MvnI	CGCG	2 cut(s)	299, 338
MwoI	GCNNNNNNNGC	9 cut(s)	130, 182, 203, 308, 317, 326, 335, 338, 533
NarI	GGCGCC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	4 cut(s)	412, 433, 438, 517
NlaIII	CATG	6 cut(s)	346, 398, 404, 419, 524, 548
NlaIV	GGNNCC	2 cut(s)	51, 86
NmeAIII	GCCGAG	2 cut(s)	224, 402
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	529
PagI	TCATGA	2 cut(s)	415, 520
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	26, 141
PluTI	GGCGCC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	291, 371
PspGI	CCWGG	2 cut(s)	291, 371
PspN4I	GGNNCC	2 cut(s)	51, 86
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	46, 361, 382
RsaNI	GTAC	3 cut(s)	45, 360, 381
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	2 cut(s)	300, 339
SaqAI	TTAA	1 cut(s)	564
Sau3AI	GATC	4 cut(s)	412, 433, 438, 517
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	382
ScrFI	CCNGG	3 cut(s)	54, 293, 373
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	41, 71, 231, 308, 334, 514, 555
SfaNI	GCATC	2 cut(s)	257, 514
SfcI	CTRYAG	1 cut(s)	321
SfoI	GGCGCC	1 cut(s)	86
Sfr303I	CCGCGG	2 cut(s)	300, 339
SgrBI	CCGCGG	2 cut(s)	300, 339
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	114, 274, 560, 565
SsiI	CCGC	7 cut(s)	179, 297, 299, 315, 336, 338, 534
SspDI	GGCGCC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	52, 291, 371
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	20, 359
TaqI	TCGA	2 cut(s)	426, 444
TasI	AATT	4 cut(s)	114, 274, 560, 565
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	6 cut(s)	299, 302, 317, 338, 341, 536
TfiI	GAWTC	2 cut(s)	26, 141
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	8 cut(s)	33, 36, 176, 197, 311, 317, 329, 332
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	243, 267
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	114, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.