Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Reverse (-)

14140895 .. 14141503

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCACACATCAAACAGCACATCTTCAAGCAGTACTACTAATACTACTACTACTTCCACCACCCCGGGGCGTCACCCAACTTATCGGGGTGTGCGCCGCAGGAGCAGTGGAAAATGGGTGTCTGAAATCCGGGAGCCAAGAAAGCCTAATAGGATTTGGCTAGGCACATTTCCCACTCCGGAAATGGCTGCGGTTGCTTATGATGTTGCAGCTATTGCCCTCAAGGGTCAAGATGCCGAGCTCAACTTCCCCAACTCGGCTTCCTCGTTGCCCGTGCCAGCCTCTAGTTCCTCACGTGACATCCAGGCGGCGGCAGCCTCCGCTGCAGCTGCTATAGGAGCAGCGGCGGCCGCCATGGGAGTGGGAAATGATGATTCTCATTCAAGAACTGAGGTGCAGGCTCAGGGTCATAGAACAATTGAGGCTGCTGATAGAGTTGCGTTGAGTGATCATCAGTTTGTTGATGAGGATCTGATCTTTGACATGCCTAACGTTCTGGTGAACATGGCTGAGGGAATGCTTCTTAGCCCTCCTCGCTTGGACATAGCTGATGATGATGTTGTTGGTGCTGATCAAGAAGATGATCAGAACCTATGGAAATTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

203

Amino Acids

21.54

Weight (kDa)

4.91

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	8 cut(s)	97, 191, 308, 311, 321, 344, 347, 351
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	599
AcvI	CACGTG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	3 cut(s)	66, 256, 310
AgsI	TTSAA	2 cut(s)	27, 384
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	212, 241, 329, 548
AluI	AGCT	4 cut(s)	212, 241, 329, 548
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	8 cut(s)	188, 209, 314, 323, 326, 329, 341, 425
ApoI	RAATTY	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	96
AsuC2I	CCSGG	3 cut(s)	65, 66, 131
AsuHPI	GGTGA	2 cut(s)	65, 511
AvaI	CYCGRG	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	8 cut(s)	175, 221, 310, 316, 326, 338, 353, 412
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	3 cut(s)	448, 571, 583
BcnI	CCSGG	3 cut(s)	65, 66, 131
BfaI	CTAG	2 cut(s)	161, 285
BfmI	CTRYAG	2 cut(s)	324, 333
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	4 cut(s)	65, 66, 131, 305
BmeT110I	CYCGRG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	4 cut(s)	65, 66, 131, 305
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	2 cut(s)	402, 510
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	65, 66, 131
BsaAI	YACGTR	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	63, 64, 65, 354
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 256, 310
Bse8I	GATNNNNATC	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	4 cut(s)	63, 64, 65, 354
BseGI	GGATG	1 cut(s)	300
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	66, 256, 310
BseMII	CTCAG	3 cut(s)	381, 416, 501
BseRI	GAGGAG	1 cut(s)	522
BseX3I	CGGCCG	1 cut(s)	348
BseXI	GCAGC	8 cut(s)	175, 221, 310, 316, 326, 338, 353, 412
BsgI	GTGCAG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	65, 130, 179
BslI	CCNNNNNNNGG	3 cut(s)	66, 256, 310
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	448, 469, 474, 571, 583
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	8 cut(s)	97, 191, 308, 311, 321, 344, 347, 351
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	3 cut(s)	382, 415, 502
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	477
BssECI	CCNNGG	4 cut(s)	63, 64, 65, 354
BssMI	GATC	5 cut(s)	448, 469, 474, 571, 583
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	279, 399
BstDEI	CTNAG	4 cut(s)	390, 402, 510, 524
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	5 cut(s)	451, 472, 477, 574, 586
BstMBI	GATC	5 cut(s)	448, 469, 474, 571, 583
BstMCI	CGRYCG	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	4 cut(s)	63, 64, 129, 303
BstSFI	CTRYAG	2 cut(s)	324, 333
BstV1I	GCAGC	8 cut(s)	175, 221, 310, 316, 326, 338, 353, 412
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	469
BstZI	CGGCCG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	279, 399
CciNI	GCGGCCGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	96
Cfr9I	CCCGGG	1 cut(s)	64
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	3 cut(s)	355, 484, 505
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	4 cut(s)	390, 402, 510, 524
DpnI	GATC	5 cut(s)	450, 471, 476, 573, 585
DpnII	GATC	5 cut(s)	448, 469, 474, 571, 583
EaeI	YGGCCR	1 cut(s)	348
EagI	CGGCCG	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	3 cut(s)	358, 487, 508
FaiI	YATR	8 cut(s)	201, 335, 356, 411, 485, 506, 545, 595
FatI	CATG	3 cut(s)	354, 483, 504
FbaI	TGATCA	3 cut(s)	448, 571, 583
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	161, 285
GlaI	GCGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	65, 130, 179
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	358, 487, 508
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	3 cut(s)	65, 130, 179
HphI	GGTGA	2 cut(s)	65, 511
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	124, 474, 588
Hpy188III	TCNNGA	4 cut(s)	179, 230, 384, 575
Hpy8I	GTNNAC	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	295, 492
HpyCH4V	TGCA	4 cut(s)	4, 209, 326, 397
HpyF3I	CTNAG	4 cut(s)	390, 402, 510, 524
HpySE526I	ACGT	2 cut(s)	295, 492
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	358, 487, 508
HspAI	GCGC	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	3 cut(s)	448, 571, 583
Kzo9I	GATC	5 cut(s)	448, 469, 474, 571, 583
LmnI	GCTCC	3 cut(s)	102, 133, 338
Lsp1109I	GCAGC	8 cut(s)	175, 221, 310, 316, 326, 338, 353, 412
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	161, 285
MaeII	ACGT	2 cut(s)	295, 492
MaeIII	GTNAC	2 cut(s)	71, 296
MalI	GATC	5 cut(s)	450, 471, 476, 573, 585
MboI	GATC	5 cut(s)	448, 469, 474, 571, 583
MboII	GAAGA	2 cut(s)	15, 590
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	3 cut(s)	417, 599, 604
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	3 cut(s)	323, 329, 344
MspI	CCGG	3 cut(s)	65, 130, 179
MspR9I	CCNGG	4 cut(s)	65, 66, 131, 305
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	305
NciI	CCSGG	3 cut(s)	65, 66, 131
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	5 cut(s)	448, 469, 474, 571, 583
NlaIII	CATG	3 cut(s)	358, 487, 508
NlaIV	GGNNCC	1 cut(s)	135
NmeAIII	GCCGAG	2 cut(s)	236, 262
NmuCI	GTSAC	2 cut(s)	71, 296
NotI	GCGGCCGC	1 cut(s)	348
NspI	RCATGY	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	129
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	303
PspCI	CACGTG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	603
Sau3AI	GATC	5 cut(s)	448, 469, 474, 571, 583
ScaI	AGTACT	1 cut(s)	34
ScrFI	CCNGG	4 cut(s)	65, 66, 131, 305
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	214, 243, 298, 331, 396, 495, 550, 594
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	324, 333
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	417, 599, 604
SsiI	CCGC	8 cut(s)	97, 191, 308, 311, 321, 344, 347, 351
SspMI	CTAG	2 cut(s)	161, 285
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	63, 64, 129, 303
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	2 cut(s)	298, 495
TasI	AATT	3 cut(s)	417, 599, 604
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	6 cut(s)	99, 311, 314, 347, 350, 353
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	71, 296
TseI	GCWGC	8 cut(s)	188, 209, 314, 323, 326, 329, 341, 425
Tsp45I	GTSAC	2 cut(s)	71, 296
TspMI	CCCGGG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	599
XceI	RCATGY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	2 cut(s)	161, 285
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.