Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Forward (+)

1848057 .. 1848689

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1019000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTACACCACAAATACAACTACAACATCAATCAGTACGGGAAGTACTACTACAACATCAAGCAGTACTGGAAGTACTACTACTTCCACTGGGCGTCACCCAACGTACCGCGGTATACGGCGCAGGAGCAGTGGAAAATGGGTCTCAGAAATCCGAGAGCCCAAAAAACCTAATAGGATTTGGCTAGGCACATTTACCACACCCGAAATGGCTGCGGTTGCTTATGACGTGGCTGCTATCGCTCTCAAGGGTCAAGATGCTGAGCTCAACTTCCCCAACTCCGCTTCTTCATTGCCCGTGCCAGCCTCCACTTCACCACGTGACATCCAGGCGGCAGCATCCTCCGCTGCTGCTGCCATGGGAGTTGCAATTGATCACGGTTCTTATTCAAGGAGTGAGGTGCAGGGTGATCAGCAAGATGCTCATCAGGCTCATAAGACAGTTGATGAGGCTGATAGATTAATGTTGAATCAGGAGTTTGTTGATGAGGATCTGATCTTCAATATGCCTAACGTTCTAGTGAACATGGCTGAGGGAATGCTTCTTAGCCCTCCTCGCTTGGACATAGCTGGCGATGATGCTATAGGTGCTGATCAAGAACAAGGAGACCATAACCTTTGGAAATTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

211

Amino Acids

22.56

Weight (kDa)

5.03

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	35 - 84	1.6e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	111
AciI	CCGC	6 cut(s)	109, 111, 215, 282, 332, 345
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	623
AcvI	CACGTG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	6 cut(s)	5, 37, 46, 67, 76, 107
AgsI	TTSAA	3 cut(s)	390, 469, 502
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	265, 569
AluI	AGCT	2 cut(s)	265, 569
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	148, 600
AlwI	GGATC	1 cut(s)	498
ApeKI	GCWGC	6 cut(s)	212, 233, 335, 347, 350, 353
ApoI	RAATTY	1 cut(s)	623
AseI	ATTAAT	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	89, 306, 419
BanII	GRGCYC	2 cut(s)	162, 267
BarI	GAAGNNNNNNTAC	6 cut(s)	34, 64, 66, 67, 96, 99
BbrPI	CACGTG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	6 cut(s)	199, 220, 334, 337, 340, 347
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	3 cut(s)	373, 409, 592
BcoDI	GTCTC	2 cut(s)	148, 600
BfaI	CTAG	2 cut(s)	185, 518
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	7 cut(s)	213, 234, 333, 336, 348, 351, 354
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	7 cut(s)	214, 235, 334, 337, 349, 352, 355
BmcAI	AGTACT	3 cut(s)	46, 67, 76
Bme1390I	CCNGG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	4 cut(s)	247, 347, 409, 568
BmuI	ACTGGG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	2 cut(s)	423, 489
BsaHI	GRCGYC	1 cut(s)	94
BsaI	GGTCTC	2 cut(s)	148, 600
BsaJI	CCNNGG	2 cut(s)	109, 357
Bse1I	ACTGG	2 cut(s)	73, 94
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	2 cut(s)	423, 489
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	109, 357
BseGI	GGATG	2 cut(s)	324, 338
BseJI	GATNNNNATC	2 cut(s)	423, 489
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	159, 252, 522
BseNI	ACTGG	2 cut(s)	73, 94
BseRI	GAGGAG	1 cut(s)	543
BseXI	GCAGC	6 cut(s)	199, 220, 334, 337, 340, 347
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	148, 600
BsmI	GAATGC	1 cut(s)	543
Bso31I	GGTCTC	2 cut(s)	148, 600
Bsp1286I	GDGCHC	2 cut(s)	162, 267
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	373, 409, 490, 495, 592
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	6 cut(s)	109, 111, 215, 282, 332, 345
BspCNI	CTCAG	3 cut(s)	158, 253, 523
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	498
BspTNI	GGTCTC	2 cut(s)	148, 600
BsrDI	GCAATG	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	73, 94
BssECI	CCNNGG	2 cut(s)	109, 357
BssMI	GATC	5 cut(s)	373, 409, 490, 495, 592
BssNAI	GTATAC	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	380, 442
BstACI	GRCGYC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	303, 571
BstDEI	CTNAG	4 cut(s)	145, 261, 531, 545
BstDSI	CCRYGG	2 cut(s)	109, 357
BstF5I	GGATG	2 cut(s)	324, 338
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	376, 412, 493, 498, 595
BstMAI	GTCTC	2 cut(s)	148, 600
BstMBI	GATC	5 cut(s)	373, 409, 490, 495, 592
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 239, 344, 353, 428, 555, 587
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	6 cut(s)	199, 220, 334, 337, 340, 347
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BstZ17I	GTATAC	1 cut(s)	116
BtgI	CCRYGG	2 cut(s)	109, 357
BtgZI	GCGATG	1 cut(s)	588
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	324, 338
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	87, 136
Cac8I	GCNNGC	2 cut(s)	303, 571
CfoI	GCGC	1 cut(s)	123
Cfr42I	CCGCGG	1 cut(s)	112
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	6 cut(s)	4, 36, 45, 66, 75, 106
CviAII	CATG	2 cut(s)	358, 526
CviQI	GTAC	6 cut(s)	4, 36, 45, 66, 75, 106
DdeI	CTNAG	4 cut(s)	145, 261, 531, 545
DpnI	GATC	5 cut(s)	375, 411, 492, 497, 594
DpnII	GATC	5 cut(s)	373, 409, 490, 495, 592
DraIII	CACNNNGTG	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	162, 267
Eco31I	GGTCTC	2 cut(s)	148, 600
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	162, 267
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	361, 529
FaiI	YATR	9 cut(s)	116, 225, 359, 435, 506, 527, 566, 584, 612
FatI	CATG	2 cut(s)	357, 525
FbaI	TGATCA	3 cut(s)	373, 409, 592
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	213, 234, 333, 336, 348, 351, 354
FokI	GGATG	2 cut(s)	311, 325
FriOI	GRGCYC	2 cut(s)	162, 267
Fsp4HI	GCNGC	7 cut(s)	213, 234, 333, 336, 348, 351, 354
FspBI	CTAG	2 cut(s)	185, 518
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	7 cut(s)	213, 234, 333, 336, 348, 351, 354
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	361, 529
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	469
HphI	GGTGA	3 cut(s)	89, 306, 419
Hpy166II	GTNNAC	3 cut(s)	6, 116, 523
Hpy188I	TCNGA	3 cut(s)	148, 155, 495
Hpy188III	TCNNGA	3 cut(s)	254, 473, 596
Hpy8I	GTNNAC	3 cut(s)	6, 116, 523
HpyCH4III	ACNGT	2 cut(s)	380, 442
HpyCH4IV	ACGT	4 cut(s)	104, 228, 319, 513
HpyCH4V	TGCA	2 cut(s)	368, 403
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 239, 344, 353, 428, 555, 587
HpyF3I	CTNAG	4 cut(s)	145, 261, 531, 545
HpySE526I	ACGT	4 cut(s)	104, 228, 319, 513
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	361, 529
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	3 cut(s)	373, 409, 592
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	373, 409, 490, 495, 592
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	6 cut(s)	199, 220, 334, 337, 340, 347
LweI	GCATC	4 cut(s)	247, 347, 409, 568
MaeI	CTAG	2 cut(s)	185, 518
MaeII	ACGT	4 cut(s)	104, 228, 319, 513
MaeIII	GTNAC	2 cut(s)	95, 320
MalI	GATC	5 cut(s)	375, 411, 492, 497, 594
MboI	GATC	5 cut(s)	373, 409, 490, 495, 592
MboII	GAAGA	2 cut(s)	279, 490
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	162, 267
MluCI	AATT	3 cut(s)	369, 623, 628
MnlI	CCTC	8 cut(s)	316, 352, 391, 442, 481, 526, 561, 564
MseI	TTAA	3 cut(s)	461, 627, 631
MspA1I	CMGCKG	2 cut(s)	111, 347
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	7 cut(s)	218, 239, 344, 353, 428, 555, 587
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	5 cut(s)	373, 409, 490, 495, 592
NlaIII	CATG	2 cut(s)	361, 529
NmuCI	GTSAC	2 cut(s)	95, 320
PacI	TTAATTAA	1 cut(s)	631
PctI	GAATGC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	7 cut(s)	214, 235, 334, 337, 349, 352, 355
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	6 cut(s)	5, 37, 46, 67, 76, 107
RsaNI	GTAC	6 cut(s)	4, 36, 45, 66, 75, 106
SacI	GAGCTC	1 cut(s)	267
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	461, 627, 631
SatI	GCNGC	7 cut(s)	213, 234, 333, 336, 348, 351, 354
Sau3AI	GATC	5 cut(s)	373, 409, 490, 495, 592
ScaI	AGTACT	3 cut(s)	46, 67, 76
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	162, 267
SfaNI	GCATC	4 cut(s)	247, 347, 409, 568
SfcI	CTRYAG	1 cut(s)	582
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	369, 623, 628
SsiI	CCGC	6 cut(s)	109, 111, 215, 282, 332, 345
SspMI	CTAG	2 cut(s)	185, 518
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	380, 442
TaiI	ACGT	4 cut(s)	107, 231, 322, 516
TasI	AATT	3 cut(s)	369, 623, 628
TatI	WGTACW	4 cut(s)	3, 44, 65, 74
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	3 cut(s)	461, 627, 631
Tru9I	TTAA	3 cut(s)	461, 627, 631
TscAI	CASTG	2 cut(s)	94, 136
TseFI	GTSAC	2 cut(s)	95, 320
TseI	GCWGC	6 cut(s)	212, 233, 335, 347, 350, 353
Tsp45I	GTSAC	2 cut(s)	95, 320
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	94, 136
VspI	ATTAAT	1 cut(s)	461
XapI	RAATTY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	2 cut(s)	185, 518
ZrmI	AGTACT	3 cut(s)	46, 67, 76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.