Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015279

Physical Location & Seq

Genomic Coordinates Forward (+)

1557598 .. 1558197

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1017000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCACGCCACGAATACTACTACAACATCAAGCAGTTCTACCACTTCCATTGTCCCAGGGCGTCACCCAACATACCGTGGTGTACGCCGCAGGAGTAGTGGAAAATGGGTTTCGGAAATCCGAGAGCCCAAAAAACCTAATAGGATTTGGCTAGGCACATTTCCCACACCCGAAATGGCCGCGGTTGCTTATGACGTGGCCGCTATCGCTCTCAAGGGTCAAGATGCTGAGCTCAACTTCCCCAACTCCGCTTCTTCATTGCCCGTGCCGGCCTCCACTTCGTCACGTGACATCCAGGCGGCGGCATCCTCCGCTGCTGCGGCCATGGGAGTTGCAATTGATCGCTGTTCTTATTCAAGGGATGAGGTGCAAGGTGGTCACCATAATGTTCATCAGGCTCATAAGACAGTTGATGAGGATGACAGATTTGTGCTGAATCATGAGTTTGTTGATGAGGATCTGATCTTTAATATGCCTAACGTTCTAGTGAACATGGCTGAGGGAATGCTGCTTAGCCCTCCTCGCTTGGACATAGCTGGTGATGATGCTATAGATGCTGATCAAGAACAAGGGGACCAGAACCTTTGGAAATTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

200

Amino Acids

21.72

Weight (kDa)

5.28

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	24 - 73	2.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36450
fragaria_vesca	FvH4_6g18000 FvH4_6g18000 FvH4_6g18000
malus_domestica	MD12G1019000.v1.1 MD14G1017000.v1.1
prunus_persica	Prupe.7G116300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0472281
rosa_laevigata	RLG00000024092
rosa_multiflora	Rmu_sc0008192.1_g000020
rosa_roxburghii	Rroxscaffold_6G00409100
rosa_rugosa	Rorug03G0123600
rosa_samantha	Rh3AG175900 Rh3BG201600 Rh3DG173700
rosa_wichuraiana	Rw3G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AciI	CCGC	9 cut(s)	88, 180, 182, 201, 249, 299, 302, 312, 320
AclI	AACGTT	1 cut(s)	480
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	3 cut(s)	177, 198, 321
AcsI	RAATTY	1 cut(s)	590
AcvI	CACGTG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	357
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	55, 294
AluBI	AGCT	2 cut(s)	232, 536
AluI	AGCT	2 cut(s)	232, 536
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	4 cut(s)	177, 198, 270, 321
ApeKI	GCWGC	3 cut(s)	314, 317, 508
ApoI	RAATTY	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	3 cut(s)	56, 371, 551
AvaII	GGWCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	129, 234
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	301, 304, 495
BciT130I	CCWGG	2 cut(s)	57, 296
BclI	TGATCA	1 cut(s)	559
BfaI	CTAG	2 cut(s)	152, 485
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	9 cut(s)	88, 180, 201, 300, 303, 315, 318, 321, 509
BlpI	GCTNAGC	2 cut(s)	228, 512
BlsI	GCNGC	9 cut(s)	89, 181, 202, 301, 304, 316, 319, 322, 510
Bme1390I	CCNGG	2 cut(s)	57, 296
Bme18I	GGWCC	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	1 cut(s)	575
BmrFI	CCNGG	2 cut(s)	57, 296
BmsI	GCATC	4 cut(s)	214, 314, 535, 544
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu1102I	GCTNAGC	2 cut(s)	228, 512
BpuEI	CTTGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	2 cut(s)	456, 558
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	5 cut(s)	55, 56, 76, 180, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	257
Bse8I	GATNNNNATC	2 cut(s)	456, 558
BseBI	CCWGG	2 cut(s)	57, 296
BseDI	CCNNGG	5 cut(s)	55, 56, 76, 180, 324
BseGI	GGATG	4 cut(s)	291, 305, 367, 424
BseJI	GATNNNNATC	2 cut(s)	456, 558
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	219, 489
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	301, 304, 495
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	4 cut(s)	179, 200, 272, 323
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	38, 587
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	38, 587
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	4 cut(s)	179, 200, 272, 323
Bsp1286I	GDGCHC	2 cut(s)	129, 234
Bsp143I	GATC	4 cut(s)	340, 457, 462, 559
Bsp1720I	GCTNAGC	2 cut(s)	228, 512
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	9 cut(s)	88, 180, 182, 201, 249, 299, 302, 312, 320
BspANI	GGCC	4 cut(s)	179, 200, 272, 323
BspCNI	CTCAG	2 cut(s)	220, 490
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	575
BspPI	GGATC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	5 cut(s)	55, 56, 76, 180, 324
BssMI	GATC	4 cut(s)	340, 457, 462, 559
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	57, 296
Bst4CI	ACNGT	2 cut(s)	77, 409
BstACI	GRCGYC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	6, 270
BstDEI	CTNAG	3 cut(s)	228, 498, 512
BstDSI	CCRYGG	3 cut(s)	76, 180, 324
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	291, 305, 367, 424
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	4 cut(s)	343, 460, 465, 562
BstMBI	GATC	4 cut(s)	340, 457, 462, 559
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 206, 311, 320, 522, 554
BstNI	CCWGG	2 cut(s)	57, 296
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	55, 294
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	301, 304, 495
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	179, 200, 272, 323
BtgI	CCRYGG	3 cut(s)	76, 180, 324
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	291, 305, 367, 424
Cac8I	GCNNGC	2 cut(s)	6, 270
CciI	TCATGA	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	574
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	83
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	3 cut(s)	325, 440, 493
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	3 cut(s)	228, 498, 512
DpnI	GATC	4 cut(s)	342, 459, 464, 561
DpnII	GATC	4 cut(s)	340, 457, 462, 559
EaeI	YGGCCR	3 cut(s)	177, 198, 321
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	129, 234
Eco47I	GGWCC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	287
Eco91I	GGTNACC	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	55, 294
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	129, 234
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	328, 443, 496
FaqI	GGGAC	2 cut(s)	38, 587
FatI	CATG	3 cut(s)	324, 439, 492
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	9 cut(s)	88, 180, 201, 300, 303, 315, 318, 321, 509
FokI	GGATG	4 cut(s)	278, 292, 374, 431
FriOI	GRGCYC	2 cut(s)	129, 234
Fsp4HI	GCNGC	9 cut(s)	88, 180, 201, 300, 303, 315, 318, 321, 509
FspBI	CTAG	2 cut(s)	152, 485
GluI	GCNGC	9 cut(s)	88, 180, 201, 300, 303, 315, 318, 321, 509
HaeIII	GGCC	4 cut(s)	179, 200, 272, 323
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	3 cut(s)	328, 443, 496
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	56, 371, 551
Hpy166II	GTNNAC	2 cut(s)	83, 490
Hpy188I	TCNGA	3 cut(s)	115, 122, 462
Hpy188III	TCNNGA	3 cut(s)	221, 440, 563
Hpy8I	GTNNAC	2 cut(s)	83, 490
HpyCH4III	ACNGT	2 cut(s)	77, 409
HpyCH4IV	ACGT	3 cut(s)	195, 286, 480
HpyCH4V	TGCA	3 cut(s)	4, 335, 370
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 206, 311, 320, 522, 554
HpyF3I	CTNAG	3 cut(s)	228, 498, 512
HpySE526I	ACGT	3 cut(s)	195, 286, 480
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	328, 443, 496
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	559
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	340, 457, 462, 559
LpnPI	CCDG	9 cut(s)	42, 69, 76, 281, 282, 308, 380, 522, 590
Lsp1109I	GCAGC	3 cut(s)	301, 304, 495
LweI	GCATC	4 cut(s)	214, 314, 535, 544
MaeI	CTAG	2 cut(s)	152, 485
MaeII	ACGT	3 cut(s)	195, 286, 480
MaeIII	GTNAC	4 cut(s)	62, 282, 287, 377
MalI	GATC	4 cut(s)	342, 459, 464, 561
MboI	GATC	4 cut(s)	340, 457, 462, 559
MboII	GAAGA	1 cut(s)	246
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	129, 234
MluCI	AATT	2 cut(s)	336, 590
MnlI	CCTC	8 cut(s)	283, 319, 358, 409, 448, 493, 528, 531
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	182, 314
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	57, 296
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	57, 296
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	6 cut(s)	185, 206, 311, 320, 522, 554
NaeI	GCCGGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	340, 457, 462, 559
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	328, 443, 496
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	4 cut(s)	62, 282, 287, 377
PagI	TCATGA	1 cut(s)	439
PasI	CCCWGGG	1 cut(s)	56
PctI	GAATGC	1 cut(s)	510
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	9 cut(s)	89, 181, 202, 301, 304, 316, 319, 322, 510
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	55, 294
PspCI	CACGTG	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	55, 294
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	234
SacII	CCGCGG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	9 cut(s)	88, 180, 201, 300, 303, 315, 318, 321, 509
Sau3AI	GATC	4 cut(s)	340, 457, 462, 559
Sau96I	GGNCC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	57, 296
SduI	GDGCHC	2 cut(s)	129, 234
SetI	ASST	9 cut(s)	139, 198, 234, 289, 369, 376, 483, 538, 585
SfaNI	GCATC	4 cut(s)	214, 314, 535, 544
SfcI	CTRYAG	1 cut(s)	549
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	336, 590
SsiI	CCGC	9 cut(s)	88, 180, 182, 201, 249, 299, 302, 312, 320
SspMI	CTAG	2 cut(s)	152, 485
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	55, 294
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	77, 409
TaiI	ACGT	3 cut(s)	198, 289, 483
TasI	AATT	2 cut(s)	336, 590
TauI	GCSGC	6 cut(s)	90, 182, 203, 302, 305, 323
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	4 cut(s)	62, 282, 287, 377
TseI	GCWGC	3 cut(s)	314, 317, 508
Tsp45I	GTSAC	4 cut(s)	62, 282, 287, 377
TspDTI	ATGAA	2 cut(s)	246, 380
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	2 cut(s)	152, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.