AT2G36885

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017132
Physical Location & Seq
Reverse (-)
15482003 .. 15483788
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36885.1

Sequence Viewer

Length: 771 bp
ATGGCGGCAATCACCGGATTCTCCGCTCTCTCAAACCATATCTCTCCTGCTTCATCACTTCCGTCGTCGCGTTTACTCAATTCCACTCAGTGTCTGTCCAGATTCTCAAATGTGTCTTCGTTTCCCGCGCTCTCTACCTTTCGCCGGAGAAAGATCCCGTTGACTCCGGCGTGTTCTTCGATAGTCGACGGAGATGAAGAAATTGAAGCAAGAGGTGATGATGAGAATGAGATTAGAGAGACATTGATGTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCTTCTCTCCCTGGAGCCGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATTGTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATGGCAGTGGTACTTTTTGCTATGGGTGGCTATGGAACATACCTAGGCTTCCGGATTCGTTATTCTGATGACATTGAGGAGAAGGCAAAGGCAAAAGACCTGCACCCAAAGCTTCTAGCCGGAATGTTTTTCTTTTTCGCCCTTGGAGCAACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAGTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAGGAGAAACCCGAACTGAGGAACGTGCACGGGATCCTTGGGAGCGGGATAATGGCGCTTTTCCTCGTCCATGCTGCTTTCGGCCTTCAGCTCGGTCTCAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

256

Amino Acids

27.49

Weight (kDa)

6.38

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 124 - 255 5e-29 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 501
AccBSI CCGCTC 2 cut(s) 26, 708
AccI GTMKAC 1 cut(s) 186
AccII CGCG 2 cut(s) 70, 128
AccIII TCCGGA 1 cut(s) 444
AciI CCGC 5 cut(s) 5, 24, 126, 596, 708
AclWI GGATC 3 cut(s) 148, 691, 704
AcuI CTGAAG 1 cut(s) 734
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 144, 634, 681
AgsI TTSAA 4 cut(s) 206, 352, 641, 664
AjnI CCWGG 2 cut(s) 292, 385
AluBI AGCT 2 cut(s) 505, 754
AluI AGCT 2 cut(s) 505, 754
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 3 cut(s) 233, 262, 764
Alw44I GTGCAC 1 cut(s) 689
AlwI GGATC 3 cut(s) 148, 691, 704
AlwNI CAGNNNCTG 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 444
AoxI GGCC 2 cut(s) 625, 745
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 1 cut(s) 737
AspA2I CCTAGG 1 cut(s) 436
AspLEI GCGC 2 cut(s) 130, 721
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 4, 227
AsuII TTCGAA 1 cut(s) 588
AvaII GGWCC 1 cut(s) 323
AvrII CCTAGG 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 693
BamHI GGATCC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 1 cut(s) 724
BccI CCATC 2 cut(s) 590, 661
BciT130I CCWGG 2 cut(s) 294, 387
BcoDI GTCTC 3 cut(s) 233, 262, 764
BfaI CTAG 2 cut(s) 437, 509
BfoI RGCGCY 1 cut(s) 722
BfuAI ACCTGC 1 cut(s) 501
BglII AGATCT 1 cut(s) 311
BisI GCNGC 2 cut(s) 6, 738
BlnI CCTAGG 1 cut(s) 436
BlsI GCNGC 2 cut(s) 7, 739
Bme1390I CCNGG 2 cut(s) 294, 387
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 298, 325, 698
BmrFI CCNGG 2 cut(s) 294, 387
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 764
BsaJI CCNNGG 5 cut(s) 292, 386, 436, 535, 700
BsaWI WCCGGW 2 cut(s) 14, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 634, 681
Bse1I ACTGG 1 cut(s) 550
BseAI TCCGGA 1 cut(s) 444
BseBI CCWGG 2 cut(s) 294, 387
BseDI CCNNGG 5 cut(s) 292, 386, 436, 535, 700
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 3 cut(s) 144, 634, 681
BseMII CTCAG 2 cut(s) 101, 671
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 3 cut(s) 263, 266, 485
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 70, 128
BshFI GGCC 2 cut(s) 627, 747
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 5 cut(s) 15, 145, 167, 445, 513
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 3 cut(s) 144, 634, 681
BsmAI GTCTC 3 cut(s) 233, 262, 764
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 2 cut(s) 627, 747
Bso31I GGTCTC 1 cut(s) 764
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 693
Bsp13I TCCGGA 1 cut(s) 444
Bsp143I GATC 3 cut(s) 153, 311, 696
BspACI CCGC 5 cut(s) 5, 24, 126, 596, 708
BspANI GGCC 2 cut(s) 627, 747
BspCNI CTCAG 2 cut(s) 100, 672
BspEI TCCGGA 1 cut(s) 444
BspFNI CGCG 2 cut(s) 70, 128
BspLI GGNNCC 3 cut(s) 298, 325, 698
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 3 cut(s) 148, 691, 704
BspT104I TTCGAA 1 cut(s) 588
BspTNI GGTCTC 1 cut(s) 764
BsrBI CCGCTC 2 cut(s) 26, 708
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 5 cut(s) 292, 386, 436, 535, 700
BssMI GATC 3 cut(s) 153, 311, 696
BssT1I CCWWGG 3 cut(s) 436, 535, 700
Bst2UI CCWGG 2 cut(s) 294, 387
Bst4CI ACNGT 2 cut(s) 307, 637
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 3 cut(s) 87, 680, 761
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 2 cut(s) 70, 128
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 2 cut(s) 130, 721
BstKTI GATC 3 cut(s) 156, 314, 699
BstMAI GTCTC 3 cut(s) 233, 262, 764
BstMBI GATC 3 cut(s) 153, 311, 696
BstMWI GCNNNNNNNGC 2 cut(s) 502, 539
BstNI CCWGG 2 cut(s) 294, 387
BstSCI CCNGG 2 cut(s) 292, 385
BstSLI GKGCMC 1 cut(s) 693
BstUI CGCG 2 cut(s) 70, 128
BstV1I GCAGC 1 cut(s) 724
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 3 cut(s) 153, 311, 696
BstYI RGATCY 3 cut(s) 153, 311, 696
BsuRI GGCC 2 cut(s) 627, 747
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 95, 405
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 600
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 2 cut(s) 130, 721
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 404
CviAII CATG 2 cut(s) 394, 734
CviJI RGCY 9 cut(s) 299, 367, 423, 441, 505, 512, 627, 747, 754
CviKI_1 RGCY 9 cut(s) 299, 367, 423, 441, 505, 512, 627, 747, 754
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 87, 680, 761
DpnI GATC 3 cut(s) 155, 313, 698
DpnII GATC 3 cut(s) 153, 311, 696
DraIII CACNNNGTG 1 cut(s) 90
DrdI GACNNNNNNGTC 1 cut(s) 618
DseDI GACNNNNNNGTC 1 cut(s) 618
Eco130I CCWWGG 3 cut(s) 436, 535, 700
Eco31I GGTCTC 1 cut(s) 764
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 292, 385
EcoT14I CCWWGG 3 cut(s) 436, 535, 700
ErhI CCWWGG 3 cut(s) 436, 535, 700
FaeI CATG 2 cut(s) 397, 737
FaiI YATR 8 cut(s) 39, 395, 416, 426, 433, 557, 617, 735
FaqI GGGAC 1 cut(s) 393
FatI CATG 2 cut(s) 393, 733
FauI CCCGC 2 cut(s) 133, 701
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 6, 738
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 6, 738
FspBI CTAG 2 cut(s) 437, 509
GlaI GCGC 2 cut(s) 129, 720
GluI GCNGC 2 cut(s) 6, 738
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 2 cut(s) 627, 747
HapII CCGG 5 cut(s) 15, 145, 167, 445, 513
HhaI GCGC 2 cut(s) 130, 721
Hin1II CATG 2 cut(s) 397, 737
Hin6I GCGC 2 cut(s) 128, 719
HinP1I GCGC 2 cut(s) 128, 719
HincII GTYRAC 2 cut(s) 162, 187
HindII GTYRAC 2 cut(s) 162, 187
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 5 cut(s) 18, 102, 163, 352, 448
HpaII CCGG 5 cut(s) 15, 145, 167, 445, 513
HphI GGTGA 2 cut(s) 4, 227
Hpy166II GTNNAC 4 cut(s) 74, 162, 187, 691
Hpy188I TCNGA 2 cut(s) 460, 574
Hpy188III TCNNGA 2 cut(s) 99, 445
Hpy8I GTNNAC 4 cut(s) 74, 162, 187, 691
Hpy99I CGWCG 3 cut(s) 67, 70, 191
HpyAV CCTTC 3 cut(s) 469, 572, 758
HpyCH4III ACNGT 2 cut(s) 307, 637
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 2 cut(s) 496, 691
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 539
HpyF3I CTNAG 3 cut(s) 87, 680, 761
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 2 cut(s) 397, 737
HspAI GCGC 2 cut(s) 128, 719
Kpn2I TCCGGA 1 cut(s) 444
Kzo9I GATC 3 cut(s) 153, 311, 696
LmnI GCTCC 3 cut(s) 296, 539, 705
Lsp1109I GCAGC 1 cut(s) 724
MaeI CTAG 2 cut(s) 437, 509
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 604
MalI GATC 3 cut(s) 155, 313, 698
MbiI CCGCTC 2 cut(s) 26, 708
MboI GATC 3 cut(s) 153, 311, 696
MboII GAAGA 4 cut(s) 108, 168, 209, 577
MflI RGATCY 3 cut(s) 153, 311, 696
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 2 cut(s) 79, 201
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 7 cut(s) 206, 279, 284, 287, 463, 675, 737
MroI TCCGGA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 398
MspI CCGG 5 cut(s) 15, 145, 167, 445, 513
MspR9I CCNGG 2 cut(s) 294, 387
MvaI CCWGG 2 cut(s) 294, 387
MvnI CGCG 2 cut(s) 70, 128
MwoI GCNNNNNNNGC 2 cut(s) 502, 539
NdeII GATC 3 cut(s) 153, 311, 696
NlaIII CATG 2 cut(s) 397, 737
NlaIV GGNNCC 3 cut(s) 298, 325, 698
NspV TTCGAA 1 cut(s) 588
PfeI GAWTC 4 cut(s) 18, 102, 352, 448
PkrI GCNGC 2 cut(s) 7, 739
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 292, 385
PspGI CCWGG 2 cut(s) 292, 385
PspN4I GGNNCC 3 cut(s) 298, 325, 698
PspPI GGNCC 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 153, 311, 696
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 398
SalI GTCGAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 6, 738
Sau3AI GATC 3 cut(s) 153, 311, 696
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 294, 387
SduI GDGCHC 1 cut(s) 693
SetI ASST 9 cut(s) 140, 217, 361, 438, 495, 507, 622, 690, 756
SfuI TTCGAA 1 cut(s) 588
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 2 cut(s) 79, 201
SsiI CCGC 5 cut(s) 5, 24, 126, 596, 708
SspMI CTAG 2 cut(s) 437, 509
StyD4I CCNGG 2 cut(s) 292, 385
StyI CCWWGG 3 cut(s) 436, 535, 700
TaaI ACNGT 2 cut(s) 307, 637
TaiI ACGT 1 cut(s) 690
TaqI TCGA 3 cut(s) 179, 186, 588
TaqII GACCGA 1 cut(s) 746
TasI AATT 2 cut(s) 79, 201
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 18, 102, 352, 448
TscAI CASTG 2 cut(s) 95, 405
TseI GCWGC 1 cut(s) 737
TspDTI ATGAA 3 cut(s) 42, 210, 362
TspGWI ACGGA 2 cut(s) 51, 204
TspRI CASTG 2 cut(s) 95, 405
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 323
XmaJI CCTAGG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 437, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.