RLG00000024270

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017132
Physical Location & Seq
Reverse (-)
33739889 .. 33741723
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024270

Sequence Viewer

Length: 780 bp
ATGGCCATGGTCACTGCCTCTGCTCATTGTTCTCTCAAGCTTTCCTCTCCTTTGCTACGCACCTCTGCATTTCGCAGTATCCCAAGAGCTTCCTCCAAATGCTTTTTCCCTTCGTCGTTGGCGCCTGATTTATCTGCCACTAGAAGAAGAGCTCTCTTCTCTCCTTCAGTGATAAAAAGCAAAATTAGCCAAGATGTTGATTGTGTTGAGGAGGCTGAGCAGCTACATATACAAGTGGAGAAGCCCAGTGAGACTCTCTTGTACTCCAATCTTCTGTCTCTGCTGTTTTTGGCTGCTCTCCCTGGAGCTGGTGCTGTGACATCTCTATTTGAGCCTTTCGTCGAGCTTGTCAAATCATTCAATCTTCCTGGATGGCTAGTGCATTGGGGTCACCCAGGCAACATGGCTGTTGTGCTCTTTGCAATGGGTGGCTATGGATCTTATCTTGGATACCGGATACGGTATTCTGATGATGTGGAGGAGAAGGCCAAGGCCAAAGACTTGCACCCCAAGCTTCTAGCTGGGATGTTTTTCTTCTTTGCTGCTGGAGCTACTGGTGGAGTAACAGCTCTTCTCACTTCTGACAAACCCATTTTTGAGAGTTCTCATGCTGTAACTGGATTCATTGGCCTTGGTCTCTTGACCGTTCAGACAATTTTACCTTCTTTGTTTGAGGGTAATCCAAACTTAAGAAGTGTTCATGGGGTCTTGGGTACTGGGATAATGACATTGTTTGTTGTCCATGCTGCTCTTGGACTTCAACTTGGTCTAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

260

Amino Acids

27.76

Weight (kDa)

8.43

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 127 - 258 5.9e-27 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 263, 715
AfiI CCNNNNNNNGG 1 cut(s) 308
AflII CTTAAG 1 cut(s) 688
AgsI TTSAA 2 cut(s) 361, 761
AjnI CCWGG 3 cut(s) 301, 367, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
Alw21I GWGCWC 2 cut(s) 154, 417
Alw26I GTCTC 3 cut(s) 245, 282, 641
AlwI GGATC 1 cut(s) 445
AoxI GGCC 4 cut(s) 3, 486, 492, 628
ApeKI GCWGC 4 cut(s) 220, 293, 542, 746
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 383
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
Bbv12I GWGCWC 2 cut(s) 154, 417
BbvI GCAGC 4 cut(s) 232, 280, 529, 733
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 3 cut(s) 303, 369, 396
BciVI GTATCC 3 cut(s) 89, 443, 450
BcoDI GTCTC 3 cut(s) 245, 282, 641
BfaI CTAG 3 cut(s) 141, 377, 518
BfoI RGCGCY 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 688
BfuI GTATCC 3 cut(s) 89, 443, 450
BisI GCNGC 4 cut(s) 221, 294, 543, 747
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 4 cut(s) 222, 295, 544, 748
Bme1390I CCNGG 3 cut(s) 303, 369, 396
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 3 cut(s) 303, 369, 396
BmrI ACTGGG 2 cut(s) 240, 726
BmuI ACTGGG 2 cut(s) 240, 726
BpmI CTGGAG 2 cut(s) 324, 567
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 5 cut(s) 6, 301, 394, 489, 631
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 4 cut(s) 246, 559, 622, 721
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 3 cut(s) 303, 369, 396
BseDI CCNNGG 5 cut(s) 6, 301, 394, 489, 631
BseGI GGATG 2 cut(s) 377, 531
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 4 cut(s) 246, 559, 622, 721
BseRI GAGGAG 2 cut(s) 224, 494
BseXI GCAGC 4 cut(s) 232, 280, 529, 733
BseYI CCCAGC 1 cut(s) 521
BshFI GGCC 4 cut(s) 5, 488, 494, 630
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 154, 417
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 3 cut(s) 245, 282, 641
BsnI GGCC 4 cut(s) 5, 488, 494, 630
Bso31I GGTCTC 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 154, 417
Bsp143I GATC 1 cut(s) 437
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 4 cut(s) 5, 488, 494, 630
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 445
BspQI GCTCTTC 2 cut(s) 142, 576
BspT107I GGYRCC 1 cut(s) 121
BspTI CTTAAG 1 cut(s) 688
BspTNI GGTCTC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 4 cut(s) 246, 559, 622, 721
BssECI CCNNGG 5 cut(s) 6, 301, 394, 489, 631
BssMI GATC 1 cut(s) 437
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 3 cut(s) 6, 489, 631
Bst2UI CCWGG 3 cut(s) 303, 369, 396
Bst4CI ACNGT 2 cut(s) 462, 646
Bst6I CTCTTC 3 cut(s) 142, 161, 576
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 688
BstDEI CTNAG 2 cut(s) 216, 770
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 2 cut(s) 377, 531
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 440
BstMAI GTCTC 3 cut(s) 245, 282, 641
BstMBI GATC 1 cut(s) 437
BstMWI GCNNNNNNNGC 3 cut(s) 186, 511, 548
BstNI CCWGG 3 cut(s) 303, 369, 396
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 3 cut(s) 301, 367, 394
BstV1I GCAGC 4 cut(s) 232, 280, 529, 733
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuI GTATCC 3 cut(s) 89, 443, 450
BsuRI GGCC 4 cut(s) 5, 488, 494, 630
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 377, 531
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 174, 253
CfoI GCGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 262, 714
CviAII CATG 5 cut(s) 7, 403, 608, 701, 743
CviQI GTAC 2 cut(s) 262, 714
DdeI CTNAG 2 cut(s) 216, 770
DinI GGCGCC 1 cut(s) 123
DpnI GATC 1 cut(s) 439
DpnII GATC 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 142, 161, 576
EarI CTCTTC 3 cut(s) 142, 161, 576
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 3 cut(s) 6, 489, 631
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 641
Eco53kI GAGCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 301, 367, 394
EcoT14I CCWWGG 3 cut(s) 6, 489, 631
EcoT38I GRGCYC 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 6, 489, 631
FaeI CATG 5 cut(s) 10, 406, 611, 704, 746
FaiI YATR 8 cut(s) 8, 228, 230, 404, 435, 609, 702, 744
FatI CATG 5 cut(s) 6, 402, 607, 700, 742
Fnu4HI GCNGC 4 cut(s) 221, 294, 543, 747
FokI GGATG 2 cut(s) 384, 538
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 4 cut(s) 221, 294, 543, 747
FspBI CTAG 3 cut(s) 141, 377, 518
GlaI GCGC 1 cut(s) 123
GluI GCNGC 4 cut(s) 221, 294, 543, 747
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 2 cut(s) 324, 567
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 4 cut(s) 5, 488, 494, 630
HapII CCGG 1 cut(s) 454
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 5 cut(s) 10, 406, 611, 704, 746
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 3 cut(s) 38, 512, 772
HinfI GANTC 2 cut(s) 253, 621
HpaII CCGG 1 cut(s) 454
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 3 cut(s) 469, 583, 651
Hpy188III TCNNGA 1 cut(s) 640
Hpy99I CGWCG 2 cut(s) 118, 344
HpyAV CCTTC 4 cut(s) 120, 174, 478, 672
HpyCH4III ACNGT 2 cut(s) 462, 646
HpyCH4V TGCA 4 cut(s) 68, 382, 422, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 511, 548
HpyF3I CTNAG 2 cut(s) 216, 770
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 5 cut(s) 10, 406, 611, 704, 746
HspAI GCGC 1 cut(s) 122
KasI GGCGCC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 437
LguI GCTCTTC 2 cut(s) 142, 576
LmnI GCTCC 2 cut(s) 305, 548
Lsp1109I GCAGC 4 cut(s) 232, 280, 529, 733
MaeI CTAG 3 cut(s) 141, 377, 518
MaeIII GTNAC 5 cut(s) 10, 316, 389, 562, 613
MalI GATC 1 cut(s) 439
MboI GATC 1 cut(s) 437
MboII GAAGA 7 cut(s) 148, 156, 159, 263, 356, 526, 563
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 2 cut(s) 154, 417
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 183, 654
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 8 cut(s) 28, 55, 73, 103, 202, 205, 472, 667
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 689
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 688
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 3 cut(s) 303, 369, 396
MvaI CCWGG 3 cut(s) 303, 369, 396
MwoI GCNNNNNNNGC 3 cut(s) 186, 511, 548
NarI GGCGCC 1 cut(s) 122
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 437
NlaIII CATG 5 cut(s) 10, 406, 611, 704, 746
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 3 cut(s) 10, 316, 389
PciSI GCTCTTC 2 cut(s) 142, 576
PfeI GAWTC 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 4 cut(s) 222, 295, 544, 748
PleI GAGTC 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 301, 367, 394
PspEI GGTNACC 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 3 cut(s) 301, 367, 394
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 2 cut(s) 263, 715
RsaNI GTAC 2 cut(s) 262, 714
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 2 cut(s) 142, 576
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 4 cut(s) 221, 294, 543, 747
Sau3AI GATC 1 cut(s) 437
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 303, 369, 396
SduI GDGCHC 2 cut(s) 154, 417
SfoI GGCGCC 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 35, 688
SmoI CTYRAG 2 cut(s) 35, 688
Sse9I AATT 2 cut(s) 183, 654
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 3 cut(s) 141, 377, 518
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 301, 367, 394
StyI CCWWGG 3 cut(s) 6, 489, 631
TaaI ACNGT 2 cut(s) 462, 646
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 183, 654
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 3 cut(s) 19, 174, 253
TseFI GTSAC 3 cut(s) 10, 316, 389
TseI GCWGC 4 cut(s) 220, 293, 542, 746
Tsp45I GTSAC 3 cut(s) 10, 316, 389
TspDTI ATGAA 2 cut(s) 613, 689
TspRI CASTG 3 cut(s) 19, 174, 253
Vha464I CTTAAG 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XspI CTAG 3 cut(s) 141, 377, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.