RchiOBHm_Chr3g0470401

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017132
Physical Location & Seq
Forward (+)
16383043 .. 16385688
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43620

Sequence Viewer

Length: 780 bp
ATGGCCATGGTCACTGCCTCTGCTCATTGTTCTCTCAAGCTTTCCTCTCCTTTGCTACGCACCTCTACGTTTCCCACTATCCCAACAGCTTCCTCCAAATGCTTCTTCCCTTCGTCGTTGACGCCTGATTTATCTGCCACTAGAAGAAGAGCTCTCTTCTCTCCTTCAGTGATAAAAAGCAAAATTAGCCAAGATGTTGATTGTGTTGAGGAGGCTGAGCGGCTACAAATACAAGTGGGGAAGCCCAGTGAGACTTTCTTGTACTCCAATCTTCTGCCTCTGCTGTTTTTGGCTGCTCTCCCTGGAGCTGGTGCTGTGACATCTCTATTTGAGCCTTTCGTCGAGCTTGTCAAATCATTCAATCTTCCTGGATGGCTAGTGCATTGGGGTCACCCAGGCAACATGGCTGTTGTGCTCTTTGCAATGGGTGGCTATGGATCTTATCTTGGATACCGGATACGGTATTCTGATGATGTGGAGGAGAAGGCCAAGGCCAAAGATTTGCACCCCAAGCTCCTAGCTGGGATGTTTTTCTTCTTTGCCGCCGGAGCAACTGGTGGAGTAACAGCTCTTCTCACTTCTGACAAACCCATTTTTGAGAGCTCTCATGCTGTCACTGGATTTATTGGCCTTGGTCTTTTGACCATTCAGACAATTTTACCTTCTTTGTTTGAGGGTAATCCAAACTTAAGAAGTGCTCATGGGGTCTTGGGTACTGGGATAATGACATTGTTTGTTGTCCATGCTGCTCTTGGACTTCAACTTGGTCTAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

259

Amino Acids

27.7

Weight (kDa)

8.43

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 127 - 258 7.5e-27 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 2 cut(s) 220, 543
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 263, 715
AfiI CCNNNNNNNGG 1 cut(s) 308
AflII CTTAAG 1 cut(s) 688
AgsI TTSAA 2 cut(s) 361, 761
AjnI CCWGG 3 cut(s) 301, 367, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
Alw21I GWGCWC 4 cut(s) 154, 417, 605, 700
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 445
AoxI GGCC 4 cut(s) 3, 486, 492, 628
ApeKI GCWGC 2 cut(s) 293, 746
AsuHPI GGTGA 1 cut(s) 383
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 154, 605
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
Bbv12I GWGCWC 4 cut(s) 154, 417, 605, 700
BbvI GCAGC 2 cut(s) 280, 733
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 3 cut(s) 303, 369, 396
BciVI GTATCC 2 cut(s) 443, 450
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 3 cut(s) 141, 377, 518
BfrI CTTAAG 1 cut(s) 688
BfuI GTATCC 2 cut(s) 443, 450
BisI GCNGC 4 cut(s) 221, 294, 543, 747
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 4 cut(s) 222, 295, 544, 748
Bme1390I CCNGG 3 cut(s) 303, 369, 396
BmrFI CCNGG 3 cut(s) 303, 369, 396
BmrI ACTGGG 2 cut(s) 240, 726
BmuI ACTGGG 2 cut(s) 240, 726
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 5 cut(s) 6, 301, 394, 489, 631
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 4 cut(s) 246, 559, 622, 721
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 3 cut(s) 303, 369, 396
BseDI CCNNGG 5 cut(s) 6, 301, 394, 489, 631
BseGI GGATG 2 cut(s) 377, 531
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 4 cut(s) 246, 559, 622, 721
BseRI GAGGAG 2 cut(s) 224, 494
BseXI GCAGC 2 cut(s) 280, 733
BseYI CCCAGC 1 cut(s) 521
BshFI GGCC 4 cut(s) 5, 488, 494, 630
BsiHKAI GWGCWC 4 cut(s) 154, 417, 605, 700
BsiSI CCGG 2 cut(s) 454, 546
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 4 cut(s) 5, 488, 494, 630
Bsp1286I GDGCHC 4 cut(s) 154, 417, 605, 700
Bsp143I GATC 1 cut(s) 437
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 220, 543
BspANI GGCC 4 cut(s) 5, 488, 494, 630
BspCNI CTCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 445
BspQI GCTCTTC 2 cut(s) 142, 576
BspTI CTTAAG 1 cut(s) 688
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 4 cut(s) 246, 559, 622, 721
BssECI CCNNGG 5 cut(s) 6, 301, 394, 489, 631
BssMI GATC 1 cut(s) 437
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 3 cut(s) 6, 489, 631
Bst2UI CCWGG 3 cut(s) 303, 369, 396
Bst4CI ACNGT 1 cut(s) 462
Bst6I CTCTTC 3 cut(s) 142, 161, 576
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 688
BstDEI CTNAG 2 cut(s) 216, 770
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 2 cut(s) 377, 531
BstKTI GATC 1 cut(s) 440
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 437
BstMWI GCNNNNNNNGC 3 cut(s) 186, 511, 548
BstNI CCWGG 3 cut(s) 303, 369, 396
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 3 cut(s) 301, 367, 394
BstV1I GCAGC 2 cut(s) 280, 733
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuI GTATCC 2 cut(s) 443, 450
BsuRI GGCC 4 cut(s) 5, 488, 494, 630
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 377, 531
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 174, 253, 615
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 262, 714
CviAII CATG 5 cut(s) 7, 403, 608, 701, 743
CviQI GTAC 2 cut(s) 262, 714
DdeI CTNAG 2 cut(s) 216, 770
DpnI GATC 1 cut(s) 439
DpnII GATC 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 142, 161, 576
EarI CTCTTC 3 cut(s) 142, 161, 576
Ecl136II GAGCTC 2 cut(s) 152, 603
Eco130I CCWWGG 3 cut(s) 6, 489, 631
Eco24I GRGCYC 2 cut(s) 154, 605
Eco53kI GAGCTC 2 cut(s) 152, 603
Eco57I CTGAAG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 389
EcoICRI GAGCTC 2 cut(s) 152, 603
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 301, 367, 394
EcoT14I CCWWGG 3 cut(s) 6, 489, 631
EcoT38I GRGCYC 2 cut(s) 154, 605
ErhI CCWWGG 3 cut(s) 6, 489, 631
FaeI CATG 5 cut(s) 10, 406, 611, 704, 746
FaiI YATR 6 cut(s) 8, 404, 435, 609, 702, 744
FatI CATG 5 cut(s) 6, 402, 607, 700, 742
Fnu4HI GCNGC 4 cut(s) 221, 294, 543, 747
FokI GGATG 2 cut(s) 384, 538
FriOI GRGCYC 2 cut(s) 154, 605
Fsp4HI GCNGC 4 cut(s) 221, 294, 543, 747
FspBI CTAG 3 cut(s) 141, 377, 518
GluI GCNGC 4 cut(s) 221, 294, 543, 747
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 4 cut(s) 5, 488, 494, 630
HapII CCGG 2 cut(s) 454, 546
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 5 cut(s) 10, 406, 611, 704, 746
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 2 cut(s) 38, 772
HpaII CCGG 2 cut(s) 454, 546
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 469, 583, 651
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 118, 344
HpyAV CCTTC 4 cut(s) 120, 174, 478, 672
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 382, 422, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 511, 548
HpyF3I CTNAG 2 cut(s) 216, 770
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 5 cut(s) 10, 406, 611, 704, 746
Kzo9I GATC 1 cut(s) 437
LguI GCTCTTC 2 cut(s) 142, 576
LmnI GCTCC 3 cut(s) 305, 519, 548
Lsp1109I GCAGC 2 cut(s) 280, 733
MaeI CTAG 3 cut(s) 141, 377, 518
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 5 cut(s) 10, 316, 389, 562, 613
MalI GATC 1 cut(s) 439
MbiI CCGCTC 1 cut(s) 220
MboI GATC 1 cut(s) 437
MboII GAAGA 8 cut(s) 97, 148, 156, 159, 263, 356, 526, 563
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 4 cut(s) 154, 417, 605, 700
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 183, 654
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 9 cut(s) 28, 55, 73, 103, 202, 205, 288, 472, 667
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 689
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 688
MspI CCGG 2 cut(s) 454, 546
MspR9I CCNGG 3 cut(s) 303, 369, 396
MvaI CCWGG 3 cut(s) 303, 369, 396
MwoI GCNNNNNNNGC 3 cut(s) 186, 511, 548
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 437
NlaIII CATG 5 cut(s) 10, 406, 611, 704, 746
NmuCI GTSAC 4 cut(s) 10, 316, 389, 613
PciSI GCTCTTC 2 cut(s) 142, 576
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 4 cut(s) 222, 295, 544, 748
Psp124BI GAGCTC 2 cut(s) 154, 605
Psp6I CCWGG 3 cut(s) 301, 367, 394
PspEI GGTNACC 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 3 cut(s) 301, 367, 394
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 2 cut(s) 263, 715
RsaNI GTAC 2 cut(s) 262, 714
SacI GAGCTC 2 cut(s) 154, 605
SapI GCTCTTC 2 cut(s) 142, 576
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 4 cut(s) 221, 294, 543, 747
Sau3AI GATC 1 cut(s) 437
ScrFI CCNGG 3 cut(s) 303, 369, 396
SduI GDGCHC 4 cut(s) 154, 417, 605, 700
SmlI CTYRAG 2 cut(s) 35, 688
SmoI CTYRAG 2 cut(s) 35, 688
Sse9I AATT 2 cut(s) 183, 654
SsiI CCGC 2 cut(s) 220, 543
SspMI CTAG 3 cut(s) 141, 377, 518
SstI GAGCTC 2 cut(s) 154, 605
StyD4I CCNGG 3 cut(s) 301, 367, 394
StyI CCWWGG 3 cut(s) 6, 489, 631
TaaI ACNGT 1 cut(s) 462
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 183, 654
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 223, 545
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 4 cut(s) 19, 174, 253, 622
TseFI GTSAC 4 cut(s) 10, 316, 389, 613
TseI GCWGC 2 cut(s) 293, 746
Tsp45I GTSAC 4 cut(s) 10, 316, 389, 613
TspRI CASTG 4 cut(s) 19, 174, 253, 622
Vha464I CTTAAG 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XspI CTAG 3 cut(s) 141, 377, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.