Rroxscaffold_6G00410850

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017132
Physical Location & Seq
Reverse (-)
33249831 .. 33251912
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410850.1

Sequence Viewer

Length: 699 bp
ATGGCCATGGTCACTGCCCCTGCTCATTGTTCTCTCAAGCTTTCCTCTCCTTTGCTACGCACCTCTGCATTTCCCAGTATCCCAACAGCTTCCTCCAAATGCTTTTTCCCTTCGTCGTTGGCGCCTGCGTTATCTGCCACTAGAAGAAGAGCTCCTTTGGAGAAGCCCAGTGAGACTCTCTTGCACTCCAATCTTCTGCCTCTGCTCTTTTTGGCTGCTCTCCCTGGAGCTGGTGCTGTGACATCTCTATTTGAGCCTTTCGTCGAGCTTGTCAAATCATTCAATCTTCCTGGATGGCTAGTGCATTGGGGTCACCCAGGCAACATGGCTGTTGTGCTCTTTGCAATGGGTGGCTATGGATCTTATCTTGGATACCGGATACGGTATTCTGATGATGTGGAGGAGAAGGCCAAGGCCAAAGACTTGCACCCCAAGCTTCTAGCTGGGATGTTTTTCTTCTTTGCTGCTGGAGCTACTGGTGGAGTAACAGCTCTTCTCACTTCTGACAAACCCATTTTTGAGAGTTCTCATGCTGTAACTGGATTCATTGGCCTTGGTCTCTTGACCATTCAGACAATCTTACCTTCTTTGTTTGAGGGTAATCCGAACTTAAGAAGTGTTCATGGGGTCTTGGGTACTGGGATAATGACATTGTTTGTTGTCCATGCTGCTCTTGGACTTCAACTTGAACATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

232

Amino Acids

24.71

Weight (kDa)

9.2

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 101 - 229 2.6e-26 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 1 cut(s) 230
AflII CTTAAG 1 cut(s) 610
AgsI TTSAA 3 cut(s) 283, 683, 689
AjnI CCWGG 3 cut(s) 223, 289, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 9 cut(s) 40, 89, 152, 230, 268, 436, 443, 473, 491
AluI AGCT 9 cut(s) 40, 89, 152, 230, 268, 436, 443, 473, 491
Alw21I GWGCWC 2 cut(s) 154, 339
Alw26I GTCTC 2 cut(s) 167, 563
AlwI GGATC 1 cut(s) 367
AoxI GGCC 4 cut(s) 3, 408, 414, 550
ApeKI GCWGC 3 cut(s) 215, 464, 668
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 305
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
Bbv12I GWGCWC 2 cut(s) 154, 339
BbvI GCAGC 3 cut(s) 202, 451, 655
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 3 cut(s) 225, 291, 318
BciVI GTATCC 3 cut(s) 89, 365, 372
BcoDI GTCTC 2 cut(s) 167, 563
BfaI CTAG 3 cut(s) 141, 299, 440
BfoI RGCGCY 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 610
BfuI GTATCC 3 cut(s) 89, 365, 372
BisI GCNGC 3 cut(s) 216, 465, 669
BlsI GCNGC 3 cut(s) 217, 466, 670
Bme1390I CCNGG 3 cut(s) 225, 291, 318
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 3 cut(s) 225, 291, 318
BmrI ACTGGG 3 cut(s) 69, 162, 648
BmuI ACTGGG 3 cut(s) 69, 162, 648
BpmI CTGGAG 2 cut(s) 246, 489
BpuEI CTTGAG 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 694
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 5 cut(s) 6, 223, 316, 411, 553
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 5 cut(s) 75, 168, 481, 544, 643
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 3 cut(s) 225, 291, 318
BseCI ATCGAT 1 cut(s) 694
BseDI CCNNGG 5 cut(s) 6, 223, 316, 411, 553
BseGI GGATG 2 cut(s) 299, 453
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 5 cut(s) 75, 168, 481, 544, 643
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 202, 451, 655
BseYI CCCAGC 1 cut(s) 443
BshFI GGCC 4 cut(s) 5, 410, 416, 552
BshNI GGYRCC 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 694
BsiHKAI GWGCWC 2 cut(s) 154, 339
BsiSI CCGG 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 167, 563
BsnI GGCC 4 cut(s) 5, 410, 416, 552
Bso31I GGTCTC 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 154, 339
Bsp143I GATC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 4 cut(s) 5, 410, 416, 552
BspDI ATCGAT 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 367
BspQI GCTCTTC 2 cut(s) 142, 498
BspT107I GGYRCC 1 cut(s) 121
BspTI CTTAAG 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 5 cut(s) 75, 168, 481, 544, 643
BssECI CCNNGG 5 cut(s) 6, 223, 316, 411, 553
BssMI GATC 1 cut(s) 359
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 3 cut(s) 6, 411, 553
Bst2UI CCWGG 3 cut(s) 225, 291, 318
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 2 cut(s) 142, 498
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 2 cut(s) 299, 453
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 2 cut(s) 167, 563
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 3 cut(s) 134, 433, 470
BstNI CCWGG 3 cut(s) 225, 291, 318
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 223, 289, 316
BstV1I GCAGC 3 cut(s) 202, 451, 655
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
Bsu15I ATCGAT 1 cut(s) 694
BsuI GTATCC 3 cut(s) 89, 365, 372
BsuRI GGCC 4 cut(s) 5, 410, 416, 552
BsuTUI ATCGAT 1 cut(s) 694
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 299, 453
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 175
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 694
Csp6I GTAC 1 cut(s) 636
CviAII CATG 5 cut(s) 7, 325, 530, 623, 665
CviQI GTAC 1 cut(s) 636
DinI GGCGCC 1 cut(s) 123
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 142, 498
EarI CTCTTC 2 cut(s) 142, 498
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 3 cut(s) 6, 411, 553
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 223, 289, 316
EcoT14I CCWWGG 3 cut(s) 6, 411, 553
EcoT38I GRGCYC 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 6, 411, 553
FaeI CATG 5 cut(s) 10, 328, 533, 626, 668
FaiI YATR 6 cut(s) 8, 326, 357, 531, 624, 666
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FatI CATG 5 cut(s) 6, 324, 529, 622, 664
Fnu4HI GCNGC 3 cut(s) 216, 465, 669
FokI GGATG 2 cut(s) 306, 460
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 216, 465, 669
FspBI CTAG 3 cut(s) 141, 299, 440
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 216, 465, 669
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 2 cut(s) 246, 489
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 4 cut(s) 5, 410, 416, 552
HapII CCGG 1 cut(s) 376
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 5 cut(s) 10, 328, 533, 626, 668
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 2 cut(s) 38, 434
HinfI GANTC 2 cut(s) 175, 543
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 391, 505, 573, 606
Hpy188III TCNNGA 1 cut(s) 562
Hpy99I CGWCG 2 cut(s) 118, 266
HpyAV CCTTC 3 cut(s) 120, 400, 594
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4V TGCA 5 cut(s) 68, 184, 304, 344, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 433, 470
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 5 cut(s) 10, 328, 533, 626, 668
HspAI GCGC 1 cut(s) 122
KasI GGCGCC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 359
LguI GCTCTTC 2 cut(s) 142, 498
LmnI GCTCC 3 cut(s) 157, 227, 470
Lsp1109I GCAGC 3 cut(s) 202, 451, 655
MaeI CTAG 3 cut(s) 141, 299, 440
MaeIII GTNAC 5 cut(s) 10, 238, 311, 484, 535
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 6 cut(s) 156, 159, 185, 278, 448, 485
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 154, 339
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 6 cut(s) 55, 73, 103, 210, 394, 589
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 610
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 3 cut(s) 225, 291, 318
MvaI CCWGG 3 cut(s) 225, 291, 318
MwoI GCNNNNNNNGC 3 cut(s) 134, 433, 470
NarI GGCGCC 1 cut(s) 122
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 359
NlaIII CATG 5 cut(s) 10, 328, 533, 626, 668
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 3 cut(s) 10, 238, 311
PciSI GCTCTTC 2 cut(s) 142, 498
PfeI GAWTC 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 3 cut(s) 217, 466, 670
PleI GAGTC 1 cut(s) 169
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 223, 289, 316
PspEI GGTNACC 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 3 cut(s) 223, 289, 316
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 2 cut(s) 142, 498
SaqAI TTAA 1 cut(s) 611
SatI GCNGC 3 cut(s) 216, 465, 669
Sau3AI GATC 1 cut(s) 359
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 3 cut(s) 225, 291, 318
SduI GDGCHC 2 cut(s) 154, 339
SfoI GGCGCC 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 35, 610
SmoI CTYRAG 2 cut(s) 35, 610
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 3 cut(s) 141, 299, 440
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 223, 289, 316
StyI CCWWGG 3 cut(s) 6, 411, 553
TaaI ACNGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 264, 694
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 2 cut(s) 19, 175
TseFI GTSAC 3 cut(s) 10, 238, 311
TseI GCWGC 3 cut(s) 215, 464, 668
Tsp45I GTSAC 3 cut(s) 10, 238, 311
TspDTI ATGAA 2 cut(s) 535, 611
TspRI CASTG 2 cut(s) 19, 175
Vha464I CTTAAG 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XspI CTAG 3 cut(s) 141, 299, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.