Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005701

Physical Location & Seq

Genomic Coordinates Reverse (-)

8732750 .. 8736228

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAATCATCAAATGCCTAAGCATAAGCATCAAATAGTTCCTAATCCCAAACCTTGGGGATCAATCAGAAGCAGCTTGCATTCCCTCATTGCAGTTCTTGTGGCAACTCTTCTCGTTGCAACTGTTTATCTTACCCAAGAATATGGTGTACAGTTTTTAGAAGATTGTACTGCTTCTACTACAGTGAAAACTTCTGGGGATAGCTGCAATTTGTTTTCAGGGAAATGGGTATTTGATAACCAGTCTTATCCTTTATACAAGGGGTTACAGTGTACTTATATGTCTGACCAATTGGCTTGTGAGAAGTTTGGGAGAAAAGACTTAAGCTTCCAGAACTGGAGATGGCAACCCCATCAATGTGACCTCCCTAGGTTCAATGCCACAGCGTTGCTTGAGAGGCTAAGGAACAAGAGGCTTGTGTATGTTGGGGATTCCTTGAATCGAAATCAATGGGTTTCCATGGTTTGCCTGATAGAGTCAGCTGTTCCTCCAGAGCTCAAGTCCATGCACACCAATGGCTCCTTGACCACCTTCAAAGCAACTGAATACAATGCCACAATTGAGTTCTATTGGGCTCCATTGCTAGTGGAATCGAACTCAGATCACCCGATGAATCACCGGTTACCGGAACGGATTGTTAGGGTTCAGGCAATTGAAAAGCATGCTAGACATTGGACTGATGCAGACTTTCTTGTTTTCAATTCCTATCTTTGGTGGAGAAGGTCCATGATGAGTGTCTTGTGGGGATCTTTTGAAAGCTCTGATGGAATTTACAAAGAGATTGGGATGCCTAGAGTGTATGAAATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACTAAGTTGTTCTTTGTTAGCTTGTCACCTACTCACCAAAGCGCTGAAGAATGGGGTGTGACTAGTGGCGAGAATTGCTATGGAGAAACTGAACCGATTAAGGAGGAGGGCTACAAGGGAAATGCATCGGATCCAAAAATGATGCGTGTTGTTGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATACTTAATATAACGCAACTCTCAGAGTATAGAAAAGAAGGTCATCCATCAATTTATAGGAAGCAGTGGGATGTTCTAACAGAAAAGCAATTAGCAAACCCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTTCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

414

Amino Acids

47.9

Weight (kDa)

6.54

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 121	1.1e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	122 - 410	1.3e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03420
fragaria_vesca	FvH4_3g24282 FvH4_6g16490
malus_domestica	MD04G1092300.v1.1 MD12G1110100.v1.1
prunus_persica	Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1
pyrus_communis	pycom04g08670 pycom12g11100
rosa_chinensis	RchiOBHm_Chr3g0470391
rosa_laevigata	RLG00000024271
rosa_multiflora	Rmu_co8411419.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410860
rosa_rugosa	Rorug03G0108300 Rorug03G0108400
rosa_samantha	Rh3AG158600 Rh3AG158700 Rh3BG183300 Rh3CG173800 Rh3DG191600
rosa_wichuraiana	Rw3G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1185
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	1177
AclWI	GGATC	4 cut(s)	67, 754, 983, 996
AcsI	RAATTY	1 cut(s)	768
AcuI	CTGAAG	1 cut(s)	924
AfaI	GTAC	4 cut(s)	150, 169, 274, 1020
AfeI	AGCGCT	1 cut(s)	901
AfiI	CCNNNNNNNGG	3 cut(s)	54, 625, 711
AflII	CTTAAG	1 cut(s)	322
AgeI	ACCGGT	1 cut(s)	618
AgsI	TTSAA	7 cut(s)	376, 439, 535, 656, 700, 755, 1241
AhlI	ACTAGT	1 cut(s)	920
AjnI	CCWGG	1 cut(s)	1192
AluBI	AGCT	9 cut(s)	75, 204, 327, 482, 496, 759, 879, 1030, 1219
AluI	AGCT	9 cut(s)	75, 204, 327, 482, 496, 759, 879, 1030, 1219
Alw21I	GWGCWC	2 cut(s)	498, 1221
AlwI	GGATC	4 cut(s)	67, 754, 983, 996
Aor51HI	AGCGCT	1 cut(s)	901
ApeKI	GCWGC	2 cut(s)	72, 204
ApoI	RAATTY	1 cut(s)	768
AsiGI	ACCGGT	1 cut(s)	618
AspA2I	CCTAGG	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	902
AspS9I	GGNCC	2 cut(s)	723, 838
AsuHPI	GGTGA	4 cut(s)	596, 608, 876, 884
AvaII	GGWCC	2 cut(s)	723, 838
AvrII	CCTAGG	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	988
BanI	GGYRCC	1 cut(s)	1185
BanII	GRGCYC	3 cut(s)	498, 577, 1221
Bbv12I	GWGCWC	2 cut(s)	498, 1221
BbvI	GCAGC	2 cut(s)	84, 191
BccI	CCATC	4 cut(s)	336, 360, 758, 1111
BciT130I	CCWGG	1 cut(s)	1194
BcuI	ACTAGT	1 cut(s)	920
BfaI	CTAG	6 cut(s)	369, 584, 666, 792, 921, 1158
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	903
BfrI	CTTAAG	1 cut(s)	322
BisI	GCNGC	2 cut(s)	73, 205
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	2 cut(s)	74, 206
Bme1390I	CCNGG	1 cut(s)	1194
Bme18I	GGWCC	2 cut(s)	723, 838
BmgT120I	GGNCC	2 cut(s)	723, 838
BmiI	GGNNCC	4 cut(s)	520, 576, 990, 1187
BmrFI	CCNGG	1 cut(s)	1194
BmsI	GCATC	5 cut(s)	37, 670, 777, 990, 992
BpmI	CTGGAG	3 cut(s)	358, 474, 1215
Bpu10I	CCTNAGC	2 cut(s)	18, 401
BpuEI	CTTGAG	2 cut(s)	413, 482
BsaJI	CCNNGG	3 cut(s)	53, 368, 459
BsaWI	WCCGGW	2 cut(s)	618, 625
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 625, 711
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	2 cut(s)	241, 341
Bse3DI	GCAATG	2 cut(s)	87, 578
BseBI	CCWGG	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	53, 368, 459
BseGI	GGATG	4 cut(s)	792, 1054, 1099, 1132
BseLI	CCNNNNNNNGG	3 cut(s)	54, 625, 711
BseMI	GCAATG	2 cut(s)	87, 578
BseMII	CTCAG	2 cut(s)	612, 1092
BseNI	ACTGG	2 cut(s)	241, 341
BseRI	GAGGAG	2 cut(s)	977, 1211
BseXI	GCAGC	2 cut(s)	84, 191
BshNI	GGYRCC	1 cut(s)	1185
BshTI	ACCGGT	1 cut(s)	618
BsiHKAI	GWGCWC	2 cut(s)	498, 1221
BsiSI	CCGG	2 cut(s)	619, 626
BslI	CCNNNNNNNGG	3 cut(s)	54, 625, 711
BsmI	GAATGC	1 cut(s)	79
Bsp1286I	GDGCHC	3 cut(s)	498, 577, 1221
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	59, 601, 746, 988
Bsp19I	CCATGG	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	611, 1091
BspLI	GGNNCC	4 cut(s)	520, 576, 990, 1187
BspPI	GGATC	4 cut(s)	67, 754, 983, 996
BspT107I	GGYRCC	1 cut(s)	1185
BspTI	CTTAAG	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	87, 578
BsrFI	RCCGGY	1 cut(s)	618
BsrGI	TGTACA	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	241, 341
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	53, 368, 459
BssMI	GATC	4 cut(s)	59, 601, 746, 988
BssNAI	GTATAC	1 cut(s)	1178
BssT1I	CCWWGG	3 cut(s)	53, 368, 459
Bst1107I	GTATAC	1 cut(s)	1178
Bst2UI	CCWGG	1 cut(s)	1194
Bst4CI	ACNGT	4 cut(s)	124, 153, 184, 270
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	77, 663
BstDEI	CTNAG	5 cut(s)	18, 401, 598, 861, 1078
BstDSI	CCRYGG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	792, 1054, 1099, 1132
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	4 cut(s)	62, 604, 749, 991
BstMBI	GATC	4 cut(s)	59, 601, 746, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 933
BstNI	CCWGG	1 cut(s)	1194
BstNSI	RCATGY	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	1192
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	84, 191
BstX2I	RGATCY	2 cut(s)	746, 988
BstXI	CCANNNNNNTGG	2 cut(s)	143, 1209
BstYI	RGATCY	2 cut(s)	746, 988
BstZ17I	GTATAC	1 cut(s)	1178
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	792, 1054, 1099, 1132
BtsI	GCAGTG	1 cut(s)	1127
BtsIMutI	CAGTG	3 cut(s)	189, 275, 1127
Cac8I	GCNNGC	2 cut(s)	77, 663
CfoI	GCGC	1 cut(s)	902
Cfr10I	RCCGGY	1 cut(s)	618
Cfr13I	GGNCC	2 cut(s)	723, 838
Csp6I	GTAC	4 cut(s)	149, 168, 273, 1019
CspAI	ACCGGT	1 cut(s)	618
CviAII	CATG	5 cut(s)	460, 505, 662, 727, 842
CviQI	GTAC	4 cut(s)	149, 168, 273, 1019
DdeI	CTNAG	5 cut(s)	18, 401, 598, 861, 1078
DpnI	GATC	4 cut(s)	61, 603, 748, 990
DpnII	GATC	4 cut(s)	59, 601, 746, 988
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	2 cut(s)	496, 1219
Eco130I	CCWWGG	3 cut(s)	53, 368, 459
Eco24I	GRGCYC	3 cut(s)	498, 577, 1221
Eco47I	GGWCC	2 cut(s)	723, 838
Eco47III	AGCGCT	1 cut(s)	901
Eco53kI	GAGCTC	2 cut(s)	496, 1219
Eco57I	CTGAAG	1 cut(s)	924
Eco91I	GGTNACC	1 cut(s)	621
EcoICRI	GAGCTC	2 cut(s)	496, 1219
EcoO65I	GGTNACC	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	1192
EcoT14I	CCWWGG	3 cut(s)	53, 368, 459
EcoT22I	ATGCAT	1 cut(s)	985
EcoT38I	GRGCYC	3 cut(s)	498, 577, 1221
ErhI	CCWWGG	3 cut(s)	53, 368, 459
FaeI	CATG	5 cut(s)	463, 508, 665, 730, 845
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FatI	CATG	5 cut(s)	459, 504, 661, 726, 841
FblI	GTMKAC	1 cut(s)	1177
Fnu4HI	GCNGC	2 cut(s)	73, 205
FokI	GGATG	4 cut(s)	799, 1061, 1086, 1139
FriOI	GRGCYC	3 cut(s)	498, 577, 1221
Fsp4HI	GCNGC	2 cut(s)	73, 205
FspBI	CTAG	6 cut(s)	369, 584, 666, 792, 921, 1158
GlaI	GCGC	1 cut(s)	901
GluI	GCNGC	2 cut(s)	73, 205
GsuI	CTGGAG	3 cut(s)	358, 474, 1215
HaeII	RGCGCY	1 cut(s)	903
HapII	CCGG	2 cut(s)	619, 626
HhaI	GCGC	1 cut(s)	902
Hin1II	CATG	5 cut(s)	463, 508, 665, 730, 845
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	6 cut(s)	4, 431, 439, 476, 590, 613
HpaII	CCGG	2 cut(s)	619, 626
HphI	GGTGA	4 cut(s)	596, 608, 876, 884
Hpy166II	GTNNAC	3 cut(s)	149, 273, 1178
Hpy188I	TCNGA	7 cut(s)	68, 286, 601, 763, 826, 988, 1081
Hpy188III	TCNNGA	2 cut(s)	331, 491
Hpy8I	GTNNAC	3 cut(s)	149, 273, 1178
HpyAV	CCTTC	4 cut(s)	541, 714, 1088, 1199
HpyCH4III	ACNGT	4 cut(s)	124, 153, 184, 270
HpyCH4IV	ACGT	1 cut(s)	1206
HpyCH4V	TGCA	9 cut(s)	79, 92, 119, 207, 508, 683, 983, 1054, 1169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 933
HpyF3I	CTNAG	5 cut(s)	18, 401, 598, 861, 1078
HpySE526I	ACGT	1 cut(s)	1206
Hsp92II	CATG	5 cut(s)	463, 508, 665, 730, 845
HspAI	GCGC	1 cut(s)	900
Kzo9I	GATC	4 cut(s)	59, 601, 746, 988
LmnI	GCTCC	4 cut(s)	524, 580, 1027, 1224
Lsp1109I	GCAGC	2 cut(s)	84, 191
LweI	GCATC	5 cut(s)	37, 670, 777, 990, 992
MaeI	CTAG	6 cut(s)	369, 584, 666, 792, 921, 1158
MaeII	ACGT	1 cut(s)	1206
MaeIII	GTNAC	5 cut(s)	264, 359, 621, 882, 916
MalI	GATC	4 cut(s)	61, 603, 748, 990
MboI	GATC	4 cut(s)	59, 601, 746, 988
MboII	GAAGA	3 cut(s)	101, 173, 917
MfeI	CAATTG	3 cut(s)	290, 558, 651
MflI	RGATCY	2 cut(s)	746, 988
MhlI	GDGCHC	3 cut(s)	498, 577, 1221
MluCI	AATT	9 cut(s)	208, 290, 558, 651, 700, 768, 931, 1107, 1145
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	804, 813
Mph1103I	ATGCAT	1 cut(s)	985
MseI	TTAA	4 cut(s)	323, 846, 957, 1062
MslI	CAYNNNNRTG	2 cut(s)	357, 513
MspA1I	CMGCKG	1 cut(s)	482
MspCI	CTTAAG	1 cut(s)	322
MspI	CCGG	2 cut(s)	619, 626
MspR9I	CCNGG	1 cut(s)	1194
MunI	CAATTG	3 cut(s)	290, 558, 651
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	1194
MwoI	GCNNNNNNNGC	2 cut(s)	397, 933
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	4 cut(s)	59, 601, 746, 988
NlaIII	CATG	5 cut(s)	463, 508, 665, 730, 845
NlaIV	GGNNCC	4 cut(s)	520, 576, 990, 1187
NmuCI	GTSAC	3 cut(s)	359, 882, 916
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	5 cut(s)	4, 431, 439, 590, 613
PflFI	GACNNNGTC	1 cut(s)	820
PflMI	CCANNNNNTGG	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	1192
PinAI	ACCGGT	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	74, 206
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	2 cut(s)	498, 1221
Psp6I	CCWGG	1 cut(s)	1192
PspEI	GGTNACC	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	1192
PspN4I	GGNNCC	4 cut(s)	520, 576, 990, 1187
PspPI	GGNCC	2 cut(s)	723, 838
PsuI	RGATCY	2 cut(s)	746, 988
PsyI	GACNNNGTC	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	4 cut(s)	150, 169, 274, 1020
RsaNI	GTAC	4 cut(s)	149, 168, 273, 1019
RseI	CAYNNNNRTG	2 cut(s)	357, 513
SacI	GAGCTC	2 cut(s)	498, 1221
SaqAI	TTAA	4 cut(s)	323, 846, 957, 1062
SatI	GCNGC	2 cut(s)	73, 205
Sau3AI	GATC	4 cut(s)	59, 601, 746, 988
Sau96I	GGNCC	2 cut(s)	723, 838
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	1194
SduI	GDGCHC	3 cut(s)	498, 577, 1221
SfaNI	GCATC	5 cut(s)	37, 670, 777, 990, 992
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	723, 838
SmiMI	CAYNNNNRTG	2 cut(s)	357, 513
SmlI	CTYRAG	3 cut(s)	322, 392, 497
SmoI	CTYRAG	3 cut(s)	322, 392, 497
SpeI	ACTAGT	1 cut(s)	920
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	9 cut(s)	208, 290, 558, 651, 700, 768, 931, 1107, 1145
SspMI	CTAG	6 cut(s)	369, 584, 666, 792, 921, 1158
SstI	GAGCTC	2 cut(s)	498, 1221
StyD4I	CCNGG	1 cut(s)	1192
StyI	CCWWGG	3 cut(s)	53, 368, 459
TaaI	ACNGT	4 cut(s)	124, 153, 184, 270
TaiI	ACGT	1 cut(s)	1209
TaqI	TCGA	2 cut(s)	442, 593
TasI	AATT	9 cut(s)	208, 290, 558, 651, 700, 768, 931, 1107, 1145
TatI	WGTACW	4 cut(s)	148, 167, 272, 1018
TfiI	GAWTC	5 cut(s)	4, 431, 439, 590, 613
Tru1I	TTAA	4 cut(s)	323, 846, 957, 1062
Tru9I	TTAA	4 cut(s)	323, 846, 957, 1062
TscAI	CASTG	3 cut(s)	189, 275, 1127
TseFI	GTSAC	3 cut(s)	359, 882, 916
TseI	GCWGC	2 cut(s)	72, 204
Tsp45I	GTSAC	3 cut(s)	359, 882, 916
TspDTI	ATGAA	3 cut(s)	17, 626, 816
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	3 cut(s)	189, 275, 1127
Tth111I	GACNNNGTC	1 cut(s)	820
Van91I	CCANNNNNTGG	1 cut(s)	54
Vha464I	CTTAAG	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	723, 838
XapI	RAATTY	1 cut(s)	768
XceI	RCATGY	1 cut(s)	665
XmaJI	CCTAGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	1177
XspI	CTAG	6 cut(s)	369, 584, 666, 792, 921, 1158
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.