Rh3AG158700

Glycogen recognition site of AMP-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005701
Physical Location & Seq
Forward (+)
14600315 .. 14603848
3534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG158700.1

Sequence Viewer

Length: 1248 bp
ATGGAAGGCAATGGTCGTGTGTCAAATGTTCCTGTTATTGAGAGTCATGTCAATAGTTCTAAGATTGGTACAGCCTTCAACTCCGACCACCATACACCAGTAGAAATTTGCACCAATTCATCATTGGATGTACTAGAAGATTTATCCTTACCGACCACCATTCCCATCAAACAAAATGATTCTGATAGTCCAAATATTGGTTGGGATCTGAACTCTGATGGACAACTTAGTGTGCCCATAGATTCTGGGACCCATTGGTCCTCAGATAAAAAGGCCTTACATAGGGACCAGGATGGGAAGGTTGACAATATGGCTGATGAAGTTGCATTGTCAACCAAAGCTTCAGTTATGGAAGAGGAAGATCATCACTCTAGTTCAGATCTTGAACTAAATCAGAATTCTGATGACGATAGCGATGCACCAGTAAAATATCCAGTGAATTTGTCCTTGGAGGAAAAGGTGACAGAATTTATGCAGAATGGAGACCTGGATGCACTTGAAGATAACATCTATGGTGTATCAATTGAGAGTGATGCTGAAGAAATCAAGAGTAGCAATAAGTTCGGGAATGCTGAAGAAGTTCAACTAAGAACTCCTACTTCAGAGTACTCAAAACATATGTTTGATGGAAGTGATGCAACATCTGAGCAAATTTTGTCTCCAACAGCAGTTGACCCCCCTCTTGGTGATGCTACTTCATTAGCTGATTCGCGGAGTACTCTATCTGACAAGAATTTGGATGTTAAGACAAGTGAAAGGGAGGATCAACATGATATTAGTCGTCTCAAGTCCATGCTGCATCAGAAGGAGTTGGAATTGTCTCGGTTGAAAGAACAGATTGAGAAGGAACAGCATGCCTTGTCGGTCTTGCAAGCAAACGCAGAAACAGCTATCAACGAAGCACAAAAGCTTATCTGCGAAAAAGATGCAGAGTTGCTTGCTGCTGAAGAAAACCTTTCAGGACTAGTGGAGGTTGAGATCCAGTTTCATGGTGATGGTGAAATTGTGGAGGTGACCGGTAGCTTCAATGGTTGGCATCATCAGATTAAATTGGATCCACAGCCACCATCCAGTATCATAGACCACTCTGGATCAAGGAAATCCAGGCTGTGGTCAACGATGCTGTGGCTGTACCCAGGAGTATATGAGATAAAATTCCTCGTTGATGGCCATTGGAGTATTGATCCTCAAAGAGAAACAGTTACTAGGGGTACAATATGTAATAACATTCTTAGAGTTGACGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMPK1_CBM

Protein Analysis

415

Amino Acids

45.89

Weight (kDa)

4.5

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 324 - 413 9.3e-16 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 256
AccB7I CCANNNNNTGG 2 cut(s) 197, 1110
AccII CGCG 1 cut(s) 712
AciI CCGC 1 cut(s) 712
AclWI GGATC 7 cut(s) 213, 771, 973, 1049, 1062, 1099, 1178
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 7 cut(s) 105, 397, 439, 467, 651, 733, 1154
AcuI CTGAAG 5 cut(s) 327, 558, 585, 594, 966
AfaI GTAC 6 cut(s) 70, 132, 608, 718, 1133, 1213
AfiI CCNNNNNNNGG 4 cut(s) 197, 282, 683, 1110
AgeI ACCGGT 1 cut(s) 1016
AgsI TTSAA 6 cut(s) 79, 386, 500, 584, 829, 1027
AhlI ACTAGT 1 cut(s) 964
AjnI CCWGG 4 cut(s) 288, 486, 1103, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 341, 704, 890, 910, 1023
AluI AGCT 5 cut(s) 341, 704, 890, 910, 1023
Alw26I GTCTC 4 cut(s) 477, 663, 788, 825
AlwI GGATC 7 cut(s) 213, 771, 973, 1049, 1062, 1099, 1178
AoxI GGCC 2 cut(s) 273, 1168
ApeKI GCWGC 2 cut(s) 796, 941
ApoI RAATTY 7 cut(s) 105, 397, 439, 467, 651, 733, 1154
AsiGI ACCGGT 1 cut(s) 1016
Asp700I GAANNNNTTC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 249, 258, 286
AsuHPI GGTGA 5 cut(s) 472, 698, 1004, 1010, 1024
AvaII GGWCC 3 cut(s) 249, 258, 286
BaeGI GKGCMC 1 cut(s) 237
BalI TGGCCA 1 cut(s) 1170
BamHI GGATCC 1 cut(s) 1054
BbvI GCAGC 2 cut(s) 783, 928
BccI CCATC 7 cut(s) 173, 212, 287, 620, 989, 1075, 1160
BcgI CGANNNNNNTGC 6 cut(s) 398, 432, 544, 578, 908, 942
BciT130I CCWGG 4 cut(s) 290, 488, 1105, 1137
BcoDI GTCTC 4 cut(s) 477, 663, 788, 825
BcuI ACTAGT 1 cut(s) 964
BfaI CTAG 4 cut(s) 134, 372, 965, 1206
BglII AGATCT 1 cut(s) 379
BisI GCNGC 2 cut(s) 797, 942
BlsI GCNGC 2 cut(s) 798, 943
BmcAI AGTACT 2 cut(s) 608, 718
Bme1390I CCNGG 4 cut(s) 290, 488, 1105, 1137
Bme18I GGWCC 3 cut(s) 249, 258, 286
BmgT120I GGNCC 3 cut(s) 249, 258, 286
BmiI GGNNCC 4 cut(s) 250, 251, 287, 1056
BmrFI CCNGG 4 cut(s) 290, 488, 1105, 1137
BmsI GCATC 9 cut(s) 406, 481, 523, 625, 679, 808, 916, 1045, 1110
BpuEI CTTGAG 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 447, 1135
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 282, 683, 1110
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 5 cut(s) 98, 422, 434, 982, 1071
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 4 cut(s) 290, 488, 1105, 1137
BseDI CCNNGG 2 cut(s) 447, 1135
BseGI GGATG 5 cut(s) 133, 298, 496, 745, 1067
BseLI CCNNNNNNNGG 4 cut(s) 197, 282, 683, 1110
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 276, 636
BseNI ACTGG 5 cut(s) 98, 422, 434, 982, 1071
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 783, 928
Bsh1236I CGCG 1 cut(s) 712
BshFI GGCC 2 cut(s) 275, 1170
BshTI ACCGGT 1 cut(s) 1016
BsiSI CCGG 1 cut(s) 1017
BslFI GGGAC 2 cut(s) 262, 299
BslI CCNNNNNNNGG 4 cut(s) 197, 282, 683, 1110
BsmAI GTCTC 4 cut(s) 477, 663, 788, 825
BsmBI CGTCTC 1 cut(s) 788
BsmFI GGGAC 2 cut(s) 262, 299
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 2 cut(s) 275, 1170
Bso31I GGTCTC 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
BspACI CCGC 1 cut(s) 712
BspANI GGCC 2 cut(s) 275, 1170
BspCNI CTCAG 2 cut(s) 275, 637
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 250, 251, 287, 1056
BspPI GGATC 7 cut(s) 213, 771, 973, 1049, 1062, 1099, 1178
BspTNI GGTCTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 5 cut(s) 98, 422, 434, 982, 1071
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 2 cut(s) 447, 1135
BssMI GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 4 cut(s) 290, 488, 1105, 1137
Bst4CI ACNGT 2 cut(s) 1201, 1244
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 855, 873, 939
BstDEI CTNAG 6 cut(s) 60, 227, 262, 587, 645, 1232
BstEII GGTNACC 1 cut(s) 1012
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 5 cut(s) 133, 298, 496, 745, 1067
BstFNI CGCG 1 cut(s) 712
BstKTI GATC 8 cut(s) 208, 364, 382, 766, 981, 1057, 1094, 1186
BstMAI GTCTC 4 cut(s) 477, 663, 788, 825
BstMBI GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
BstMWI GCNNNNNNNGC 1 cut(s) 887
BstNI CCWGG 4 cut(s) 290, 488, 1105, 1137
BstNSI RCATGY 1 cut(s) 857
BstPI GGTNACC 1 cut(s) 1012
BstSCI CCNGG 4 cut(s) 288, 486, 1103, 1135
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 2 cut(s) 783, 928
BstX2I RGATCY 4 cut(s) 205, 379, 978, 1054
BstXI CCANNNNNNTGG 1 cut(s) 989
BstYI RGATCY 4 cut(s) 205, 379, 978, 1054
BsuRI GGCC 2 cut(s) 275, 1170
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 5 cut(s) 133, 298, 496, 745, 1067
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 855, 873, 939
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 3 cut(s) 249, 258, 286
Csp6I GTAC 6 cut(s) 69, 131, 607, 717, 1132, 1212
CspAI ACCGGT 1 cut(s) 1016
CviAII CATG 5 cut(s) 47, 770, 793, 854, 989
CviQI GTAC 6 cut(s) 69, 131, 607, 717, 1132, 1212
DdeI CTNAG 6 cut(s) 60, 227, 262, 587, 645, 1232
DpnI GATC 8 cut(s) 207, 363, 381, 765, 980, 1056, 1093, 1185
DpnII GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
DrdI GACNNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 477
Eco47I GGWCC 3 cut(s) 249, 258, 286
Eco57I CTGAAG 5 cut(s) 327, 558, 585, 594, 966
Eco91I GGTNACC 1 cut(s) 1012
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 4 cut(s) 288, 486, 1103, 1135
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 788
FaeI CATG 5 cut(s) 50, 773, 796, 857, 992
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 2 cut(s) 262, 299
FatI CATG 5 cut(s) 46, 769, 792, 853, 988
FauNDI CATATG 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 797, 942
FokI GGATG 5 cut(s) 140, 305, 503, 752, 1054
Fsp4HI GCNGC 2 cut(s) 797, 942
FspBI CTAG 4 cut(s) 134, 372, 965, 1206
GluI GCNGC 2 cut(s) 797, 942
HaeIII GGCC 2 cut(s) 275, 1170
HapII CCGG 1 cut(s) 1017
Hin1II CATG 5 cut(s) 50, 773, 796, 857, 992
HincII GTYRAC 5 cut(s) 304, 333, 673, 1116, 1240
HindII GTYRAC 5 cut(s) 304, 333, 673, 1116, 1240
HindIII AAGCTT 2 cut(s) 339, 908
HinfI GANTC 4 cut(s) 43, 179, 242, 707
HpaII CCGG 1 cut(s) 1017
HphI GGTGA 5 cut(s) 472, 698, 1004, 1010, 1024
Hpy166II GTNNAC 5 cut(s) 304, 333, 673, 1116, 1240
Hpy188III TCNNGA 5 cut(s) 383, 547, 565, 960, 1089
Hpy8I GTNNAC 5 cut(s) 304, 333, 673, 1116, 1240
HpyAV CCTTC 4 cut(s) 85, 292, 799, 838
HpyCH4III ACNGT 2 cut(s) 1201, 1244
HpyCH4V TGCA 9 cut(s) 111, 326, 419, 475, 494, 638, 799, 871, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 887
HpyF3I CTNAG 6 cut(s) 60, 227, 262, 587, 645, 1232
Hsp92II CATG 5 cut(s) 50, 773, 796, 857, 992
KflI GGGWCCC 1 cut(s) 249
Kzo9I GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
Lsp1109I GCAGC 2 cut(s) 783, 928
LweI GCATC 9 cut(s) 406, 481, 523, 625, 679, 808, 916, 1045, 1110
MaeI CTAG 4 cut(s) 134, 372, 965, 1206
MaeIII GTNAC 3 cut(s) 460, 1012, 1201
MalI GATC 8 cut(s) 207, 363, 381, 765, 980, 1056, 1093, 1185
MboI GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
MboII GAAGA 7 cut(s) 149, 365, 371, 512, 551, 587, 959
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 4 cut(s) 205, 379, 978, 1054
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 1170
MluNI TGGCCA 1 cut(s) 1170
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 3 cut(s) 108, 686, 792
MnlI CCTC 9 cut(s) 271, 349, 445, 690, 754, 964, 1003, 1169, 1197
Mox20I TGGCCA 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 579
MscI TGGCCA 1 cut(s) 1170
MseI TTAA 3 cut(s) 744, 1047, 1246
MslI CAYNNNNRTG 1 cut(s) 993
Msp20I TGGCCA 1 cut(s) 1170
MspI CCGG 1 cut(s) 1017
MspR9I CCNGG 4 cut(s) 290, 488, 1105, 1137
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 4 cut(s) 290, 488, 1105, 1137
MvnI CGCG 1 cut(s) 712
MwoI GCNNNNNNNGC 1 cut(s) 887
NdeI CATATG 1 cut(s) 618
NdeII GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
NlaIII CATG 5 cut(s) 50, 773, 796, 857, 992
NlaIV GGNNCC 4 cut(s) 250, 251, 287, 1056
NmuCI GTSAC 2 cut(s) 460, 1012
NspI RCATGY 1 cut(s) 857
PaeI GCATGC 1 cut(s) 857
PceI AGGCCT 1 cut(s) 275
PctI GAATGC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 3 cut(s) 179, 242, 707
PflMI CCANNNNNTGG 2 cut(s) 197, 1110
PinAI ACCGGT 1 cut(s) 1016
PkrI GCNGC 2 cut(s) 798, 943
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 4 cut(s) 288, 486, 1103, 1135
PspEI GGTNACC 1 cut(s) 1012
PspGI CCWGG 4 cut(s) 288, 486, 1103, 1135
PspN4I GGNNCC 4 cut(s) 250, 251, 287, 1056
PspPI GGNCC 3 cut(s) 249, 258, 286
PspPPI RGGWCCY 1 cut(s) 249
PsuI RGATCY 4 cut(s) 205, 379, 978, 1054
RsaI GTAC 6 cut(s) 70, 132, 608, 718, 1133, 1213
RsaNI GTAC 6 cut(s) 69, 131, 607, 717, 1132, 1212
RseI CAYNNNNRTG 1 cut(s) 993
SaqAI TTAA 3 cut(s) 744, 1047, 1246
SatI GCNGC 2 cut(s) 797, 942
Sau3AI GATC 8 cut(s) 205, 361, 379, 763, 978, 1054, 1091, 1183
Sau96I GGNCC 3 cut(s) 249, 258, 286
ScaI AGTACT 2 cut(s) 608, 718
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 4 cut(s) 290, 488, 1105, 1137
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 9 cut(s) 406, 481, 523, 625, 679, 808, 916, 1045, 1110
SinI GGWCC 3 cut(s) 249, 258, 286
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SpeI ACTAGT 1 cut(s) 964
SphI GCATGC 1 cut(s) 857
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 1 cut(s) 712
SspI AATATT 1 cut(s) 196
SspMI CTAG 4 cut(s) 134, 372, 965, 1206
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 4 cut(s) 288, 486, 1103, 1135
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 1201, 1244
TaqII GACCGA 1 cut(s) 853
TatI WGTACW 3 cut(s) 130, 606, 716
TfiI GAWTC 3 cut(s) 179, 242, 707
Tru1I TTAA 3 cut(s) 744, 1047, 1246
Tru9I TTAA 3 cut(s) 744, 1047, 1246
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 2 cut(s) 460, 1012
TseI GCWGC 2 cut(s) 796, 941
Tsp45I GTSAC 2 cut(s) 460, 1012
TspDTI ATGAA 4 cut(s) 108, 333, 687, 977
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 2 cut(s) 197, 1110
VpaK11BI GGWCC 3 cut(s) 249, 258, 286
XagI CCTNNNNNAGG 1 cut(s) 280
XapI RAATTY 7 cut(s) 105, 397, 439, 467, 651, 733, 1154
XceI RCATGY 1 cut(s) 857
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 198
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 4 cut(s) 134, 372, 965, 1206
ZrmI AGTACT 2 cut(s) 608, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.