Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005701

Physical Location & Seq

Genomic Coordinates Reverse (-)

10570190 .. 10572946

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08670.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCTGTAGAACCTGCTGATGGTTTGTCATTGGATGAAAAGGTCTTAGATATATGTCAGGATGGGAAGGTTAACAGTATGACTGATGAAAATTCCTCTTCAGCCGTAGTTTCCGGTTTGGAAGACCATTCTAGTTCAAATCTTGAATCAAGTCACAACTCTGATTACCATTACCCGCCTTTAAAATCTCCACCCAATTTATCCTTAGAGGAAAAAGTGGCAAACTTTATGCAGAGTGGAGACTTGGATGCAGTTGAAGTAACTGAAAATAATGCTGAAGAAATCAAAGGTAAATTTGGAAACACTGAAGAGGTTCAATTAAGAACTCCTACTTCGGGGCACTCTAAAAATGTGTTTGATGGAAGGGATGCAACTATGGCATTGAATCAAAGGACATCAACATCTACTATGGCAGTTGATCCCTCTCTTTGTAGGGATGATGGTACACCAGCTGAAGGGCTAAGTTCTCTATATGACAAGGATTTGGATGTTAAGACAAATGAAAGAGACTATGAACTCGATGCTAGTCATCTCAAGTTTATGCTGCATCAGAAGGAGATTGAATTGTCACAGTTGAAGGAACAGATTAAGAAAGAACAGCTTGCTTTGTCAAACTTGCAAACCAAGGCTGAAATGGCAATCAGCAAAGCACAAAGGCTTGTCTCTGAAAAAGATGCAGAGTTACTTGCTGCTGAAGAAAGCCTTTCAGGATTAGTGGAGGTTGAGATCCAGTACGAGGGAGATGGTGAGATTGTGGAGGTGACTGGTAGCTTCAATGGTTGGCATCATCAGATTAAAATGGATCTGGAGTCATCATCTAGTATCATAGAACCCTTGAGGAAACCCAAACTTTGGTCAACAATGCTGTGGCTTTATCCAGGGACATATGAGATAAAATTCATTGTTGATGGCCAATGGAAGATTGATCCTCAAAGAGAGTCAGTTACCAGGGGTACCATATGTAACAACATTCTCCGCGTTGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

330

Amino Acids

36.68

Weight (kDa)

4.65

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03420
fragaria_vesca	FvH4_3g24282 FvH4_6g16490
malus_domestica	MD04G1092300.v1.1 MD12G1110100.v1.1
prunus_persica	Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1
pyrus_communis	pycom04g08670 pycom12g11100
rosa_chinensis	RchiOBHm_Chr3g0470391
rosa_laevigata	RLG00000024271
rosa_multiflora	Rmu_co8411419.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410860
rosa_rugosa	Rorug03G0108300 Rorug03G0108400
rosa_samantha	Rh3AG158600 Rh3AG158700 Rh3BG183300 Rh3CG173800 Rh3DG191600
rosa_wichuraiana	Rw3G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
Acc65I	GGTACC	1 cut(s)	953
AccB1I	GGYRCC	1 cut(s)	953
AccB7I	CCANNNNNTGG	1 cut(s)	852
AccII	CGCG	1 cut(s)	978
AciI	CCGC	2 cut(s)	176, 976
AclWI	GGATC	4 cut(s)	413, 721, 810, 920
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	3 cut(s)	91, 293, 896
AcuI	CTGAAG	5 cut(s)	84, 297, 327, 474, 714
AfaI	GTAC	3 cut(s)	445, 734, 955
AfiI	CCNNNNNNNGG	5 cut(s)	20, 335, 455, 736, 852
AgsI	TTSAA	8 cut(s)	138, 146, 257, 317, 385, 563, 577, 775
AjnI	CCWGG	2 cut(s)	877, 947
AluBI	AGCT	3 cut(s)	452, 601, 771
AluI	AGCT	3 cut(s)	452, 601, 771
Alw26I	GTCTC	3 cut(s)	234, 501, 667
AlwI	GGATC	4 cut(s)	413, 721, 810, 920
AoxI	GGCC	1 cut(s)	910
ApeKI	GCWGC	2 cut(s)	544, 689
ApoI	RAATTY	3 cut(s)	91, 293, 896
Asp700I	GAANNNNTTC	1 cut(s)	312
Asp718I	GGTACC	1 cut(s)	953
AsuHPI	GGTGA	2 cut(s)	758, 772
BaeGI	GKGCMC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	531, 676
BccI	CCATC	6 cut(s)	14, 56, 353, 434, 737, 902
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	879, 949
BcoDI	GTCTC	3 cut(s)	234, 501, 667
BfaI	CTAG	3 cut(s)	132, 525, 819
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	545, 690
BlsI	GCNGC	2 cut(s)	546, 691
Bme1390I	CCNGG	2 cut(s)	879, 949
BmiI	GGNNCC	1 cut(s)	955
BmrFI	CCNGG	2 cut(s)	879, 949
BmsI	GCATC	6 cut(s)	238, 358, 511, 556, 664, 793
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	827
BpuEI	CTTGAG	2 cut(s)	518, 856
BsaJI	CCNNGG	3 cut(s)	624, 878, 948
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 335, 455, 736, 852
Bse1I	ACTGG	2 cut(s)	730, 769
BseBI	CCWGG	2 cut(s)	879, 949
BseDI	CCNNGG	3 cut(s)	624, 878, 948
BseGI	GGATG	6 cut(s)	40, 67, 253, 373, 442, 493
BseLI	CCNNNNNNNGG	5 cut(s)	20, 335, 455, 736, 852
BseNI	ACTGG	2 cut(s)	730, 769
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	531, 676
Bsh1236I	CGCG	1 cut(s)	978
BshFI	GGCC	1 cut(s)	912
BshNI	GGYRCC	1 cut(s)	953
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	5 cut(s)	20, 335, 455, 736, 852
BsmAI	GTCTC	3 cut(s)	234, 501, 667
BsmFI	GGGAC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	912
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	418, 726, 802, 925
BspACI	CCGC	2 cut(s)	176, 976
BspANI	GGCC	1 cut(s)	912
BspFNI	CGCG	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	955
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	4 cut(s)	413, 721, 810, 920
BspT107I	GGYRCC	1 cut(s)	953
BsrI	ACTGG	2 cut(s)	730, 769
BssECI	CCNNGG	3 cut(s)	624, 878, 948
BssMI	GATC	4 cut(s)	418, 726, 802, 925
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	879, 949
Bst4CI	ACNGT	2 cut(s)	77, 573
Bst6I	CTCTTC	2 cut(s)	103, 303
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	46, 205, 461
BstF5I	GGATG	6 cut(s)	40, 67, 253, 373, 442, 493
BstFNI	CGCG	1 cut(s)	978
BstKTI	GATC	4 cut(s)	421, 729, 805, 928
BstMAI	GTCTC	3 cut(s)	234, 501, 667
BstMBI	GATC	4 cut(s)	418, 726, 802, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 635
BstNI	CCWGG	2 cut(s)	879, 949
BstSCI	CCNGG	2 cut(s)	877, 947
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	978
BstV1I	GCAGC	2 cut(s)	531, 676
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	726, 802
BstYI	RGATCY	2 cut(s)	726, 802
BsuRI	GGCC	1 cut(s)	912
BtsCI	GGATG	6 cut(s)	40, 67, 253, 373, 442, 493
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	603
Csp6I	GTAC	3 cut(s)	444, 733, 954
CviQI	GTAC	3 cut(s)	444, 733, 954
DdeI	CTNAG	3 cut(s)	46, 205, 461
DpnI	GATC	4 cut(s)	420, 728, 804, 927
DpnII	GATC	4 cut(s)	418, 726, 802, 925
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	103, 303
EarI	CTCTTC	2 cut(s)	103, 303
Eco130I	CCWWGG	1 cut(s)	624
Eco57I	CTGAAG	5 cut(s)	84, 297, 327, 474, 714
EcoRII	CCWGG	2 cut(s)	877, 947
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
FalI	AAGNNNNNCTT	4 cut(s)	585, 617, 687, 719
FaqI	GGGAC	1 cut(s)	895
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	2 cut(s)	886, 959
Fnu4HI	GCNGC	2 cut(s)	545, 690
FokI	GGATG	6 cut(s)	47, 74, 260, 380, 449, 500
Fsp4HI	GCNGC	2 cut(s)	545, 690
FspBI	CTAG	3 cut(s)	132, 525, 819
GluI	GCNGC	2 cut(s)	545, 690
GsuI	CTGGAG	1 cut(s)	827
HaeIII	GGCC	1 cut(s)	912
HapII	CCGG	1 cut(s)	114
HincII	GTYRAC	3 cut(s)	73, 858, 982
HindII	GTYRAC	3 cut(s)	73, 858, 982
HinfI	GANTC	4 cut(s)	146, 385, 809, 938
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	758, 772
Hpy166II	GTNNAC	4 cut(s)	73, 446, 858, 982
Hpy188I	TCNGA	4 cut(s)	163, 552, 667, 792
Hpy188III	TCNNGA	4 cut(s)	59, 143, 708, 806
Hpy8I	GTNNAC	4 cut(s)	73, 446, 858, 982
HpyAV	CCTTC	5 cut(s)	61, 357, 449, 547, 571
HpyCH4III	ACNGT	2 cut(s)	77, 573
HpyCH4V	TGCA	6 cut(s)	232, 251, 371, 547, 619, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 635
HpyF3I	CTNAG	3 cut(s)	46, 205, 461
KpnI	GGTACC	1 cut(s)	957
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	418, 726, 802, 925
Lsp1109I	GCAGC	2 cut(s)	531, 676
LweI	GCATC	6 cut(s)	238, 358, 511, 556, 664, 793
MaeI	CTAG	3 cut(s)	132, 525, 819
MaeIII	GTNAC	7 cut(s)	152, 259, 567, 681, 760, 943, 962
MalI	GATC	4 cut(s)	420, 728, 804, 927
MboI	GATC	4 cut(s)	418, 726, 802, 925
MboII	GAAGA	6 cut(s)	90, 134, 290, 320, 707, 931
MflI	RGATCY	2 cut(s)	726, 802
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	6 cut(s)	91, 196, 293, 317, 563, 896
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	2 cut(s)	818, 947
MnlI	CCTC	9 cut(s)	106, 202, 304, 433, 712, 730, 751, 831, 939
Mox20I	TGGCCA	1 cut(s)	912
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	6 cut(s)	72, 182, 320, 492, 588, 795
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	879, 949
MvaI	CCWGG	2 cut(s)	879, 949
MvnI	CGCG	1 cut(s)	978
MwoI	GCNNNNNNNGC	2 cut(s)	377, 635
NdeI	CATATG	2 cut(s)	886, 959
NdeII	GATC	4 cut(s)	418, 726, 802, 925
NlaIV	GGNNCC	1 cut(s)	955
NmuCI	GTSAC	3 cut(s)	152, 567, 760
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	146, 385
PflMI	CCANNNNNTGG	1 cut(s)	852
PkrI	GCNGC	2 cut(s)	546, 691
PleI	GAGTC	2 cut(s)	817, 946
PpsI	GAGTC	2 cut(s)	817, 946
Psp6I	CCWGG	2 cut(s)	877, 947
PspGI	CCWGG	2 cut(s)	877, 947
PspN4I	GGNNCC	1 cut(s)	955
PsuI	RGATCY	2 cut(s)	726, 802
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	445, 734, 955
RsaNI	GTAC	3 cut(s)	444, 733, 954
SaqAI	TTAA	6 cut(s)	72, 182, 320, 492, 588, 795
SatI	GCNGC	2 cut(s)	545, 690
Sau3AI	GATC	4 cut(s)	418, 726, 802, 925
SchI	GAGTC	2 cut(s)	818, 947
ScrFI	CCNGG	2 cut(s)	879, 949
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	6 cut(s)	238, 358, 511, 556, 664, 793
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	533, 835
SmoI	CTYRAG	2 cut(s)	533, 835
Sse9I	AATT	6 cut(s)	91, 196, 293, 317, 563, 896
SsiI	CCGC	2 cut(s)	176, 976
SspMI	CTAG	3 cut(s)	132, 525, 819
StyD4I	CCNGG	2 cut(s)	877, 947
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	77, 573
TaqI	TCGA	1 cut(s)	519
TasI	AATT	6 cut(s)	91, 196, 293, 317, 563, 896
TfiI	GAWTC	2 cut(s)	146, 385
Tru1I	TTAA	6 cut(s)	72, 182, 320, 492, 588, 795
Tru9I	TTAA	6 cut(s)	72, 182, 320, 492, 588, 795
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	3 cut(s)	152, 567, 760
TseI	GCWGC	2 cut(s)	544, 689
Tsp45I	GTSAC	3 cut(s)	152, 567, 760
TspDTI	ATGAA	5 cut(s)	51, 102, 516, 528, 889
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	852
XapI	RAATTY	3 cut(s)	91, 293, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	3 cut(s)	132, 525, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.