pycom12g11100

Glycogen recognition site of AMP-activated protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
13179932 .. 13184107
4176 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11100.11

Sequence Viewer

Length: 1737 bp
ATGGCGGCCTCCGTCTCTCACCTCCCCGCCTTCCTCTCCCTCTTCTCTCACAAGCTCTTCTTCTCCCACCCGCAGCAGCAATCCACTCTCGGATTCACCGCCCTACAACGCTGTCCACCGCCGCAGCGCTGCACCCTTCGCGCTTCTTCCGTCAAGAAGAAAACCAGGAAGGTAAAGAGCAATGCGGAGCTCTGCAATGATCTCCGGCAGTTCCTCACTGCGGTCGGACTTTCGGAATGTCACGTTCCATCCTTGAAGGAGCTCTCGCAGCACGGAAGGAATGATCTTGCAAACATTGTCAGACGAAGAGGATATAAACTTATAAGAGAGCTTCTTGTGGACTCGAGCAATACAGATACCAATGGTAATGCCGATACCGGATTTGCTGGAATTCAGGATGTAATCGATGATCGTAAAGAGATAGTAACAGTTTCAGTCTTGGAAAGTAATTCTGGTAGTCCTTCAGAAATTTTCACCCCTTCATCCTTGGGCGAACTTGATGACCTATCCTTGTCAACCACTGGTCGTGTCAAAGAAACCATTTCTTCTAGTTCAAATGTTGGTTTGGATCTAAACTCCGATGGACGTCCTCGCATGCCTTTAGAATCTGTTGATGGTTTGTCATTGGATGAAAAGGTCTTAGATATATGTCAGGATGGGAAGGTTGACAATATGGCTAATGAAGATTGCTCTTCAACCATAGTTTCTGTTTTGGAAGACCATTCTAGTTCAGATCTTGATCCAAGTCACAACTCTGATCATCATAGTTATCCGCCTTTAGAATCTCCACCCAATTTATCCTTGAAGGAAAAAGTGGCAAACTTTATGCAGAATGGAGAATTGGATGCAGTTGAAGATAATGTCTATGGCATATTAACTGAGAATAATGATGAAGAAATCAAGGAAGAATGTAGATTTGGAAACACTGAGGAGGTTCAAATAAGAATTCCTAAAAATGTGCTTGACAGAAGTGATGCAATTATGGCATTGAATCGAAGGACATCAACATCAACTACAGCAGTTGATCCCTCTCTTAGGGAGGATAGTTCATCAACTGAGGGGCTGAGTTCTCTATATGACAAGGATTTAGATGATAAGACAAGTGAAAGTGAGGATCAACTTGAACTTAATCATCTCAAGTTCATGCTGCATCAGAAGGAGATGGAATTGTCACAGTTGAAAGAACAGATTCAGAAGGAAGAGCTTTTTTTGTCAAACTTGCAAACCAAATCTGAAATGGCAATGAGCAAAGCACAAAAGCTTGTCTCTGAAAAAGATGCAGAGTTAATTGCTGATGAAGAAAGCCTTTCAGGATTAGTGGAGGTTGAGATTCAGTACCAGGGAGATGGCAAGATTGTGGAGGTGACTGGTAGCTTCAATGGTTGGTATCATCAGATTGAAATGGATCCACAGCCCTCATCTAGTATCATAGAGAGGGAACCTAGACTATGGTCAACAATGCTGTGGCTTTATCCAGGGACGTATGAGGGAAGTCCACTATCTGCCTTTCACCGCGACAAGGAGCCAGATCATCTACTACAATTGAAGTTGAAGCAGTCTAAGCCTATGCCATCTGAACAAGAAAGTGAATTGAAGACCACGCACGCAGAAGGCGATACGGGGCGGGCAAAGTCGAGAAGCGAAATGGTCTTATGCCTCGCAATGTATATATATCCGCCAGTCGCCATGGCTTTTAAGTTCGTAATGATTTTTGTTTTCCTGGTAGGTTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

64.41

Weight (kDa)

4.86

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AatII GACGTC 1 cut(s) 589
AccII CGCG 2 cut(s) 141, 1515
AclWI GGATC 6 cut(s) 576, 734, 1019, 1122, 1400, 1413
AcsI RAATTY 3 cut(s) 390, 468, 945
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 586
AfaI GTAC 1 cut(s) 1337
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 3 cut(s) 220, 1035, 1519
AjnI CCWGG 4 cut(s) 164, 1338, 1474, 1719
AjuI GAANNNNNNNTTGG 4 cut(s) 824, 856, 900, 932
AluBI AGCT 7 cut(s) 55, 190, 262, 331, 1204, 1261, 1374
AluI AGCT 7 cut(s) 55, 190, 262, 331, 1204, 1261, 1374
Alw21I GWGCWC 2 cut(s) 192, 264
Alw26I GTCTC 2 cut(s) 19, 1270
AlwI GGATC 6 cut(s) 576, 734, 1019, 1122, 1400, 1413
Ama87I CYCGRG 1 cut(s) 343
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 6 cut(s) 73, 76, 124, 129, 268, 1147
ApoI RAATTY 3 cut(s) 390, 468, 945
Asp700I GAANNNNTTC 1 cut(s) 1188
AspLEI GCGC 2 cut(s) 129, 143
AsuHPI GGTGA 5 cut(s) 11, 88, 466, 1375, 1502
AvaI CYCGRG 1 cut(s) 343
BamHI GGATCC 1 cut(s) 1405
BanII GRGCYC 2 cut(s) 192, 264
BbsI GAAGAC 2 cut(s) 723, 1601
Bbv12I GWGCWC 2 cut(s) 192, 264
BbvI GCAGC 6 cut(s) 85, 88, 116, 136, 280, 1134
BccI CCATC 7 cut(s) 256, 575, 608, 650, 1156, 1340, 1579
BciT130I CCWGG 4 cut(s) 166, 1340, 1476, 1721
BclI TGATCA 1 cut(s) 757
BcoDI GTCTC 2 cut(s) 19, 1270
BfaI CTAG 4 cut(s) 549, 726, 1422, 1443
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 1 cut(s) 130
BglII AGATCT 1 cut(s) 733
BisI GCNGC 8 cut(s) 6, 74, 77, 122, 125, 130, 269, 1148
BlsI GCNGC 8 cut(s) 7, 75, 78, 123, 126, 131, 270, 1149
Bme1390I CCNGG 4 cut(s) 166, 1340, 1476, 1721
BmeT110I CYCGRG 1 cut(s) 343
BmiI GGNNCC 3 cut(s) 1407, 1440, 1524
BmrFI CCNGG 4 cut(s) 166, 1340, 1476, 1721
BmsI GCATC 4 cut(s) 835, 964, 1159, 1267
BoxI GACNNNNGTC 1 cut(s) 1450
BpiI GAAGAC 2 cut(s) 723, 1601
BpuEI CTTGAG 1 cut(s) 1121
Bsa29I ATCGAT 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 586
BsaJI CCNNGG 4 cut(s) 486, 1339, 1475, 1686
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 1035, 1519
Bse1I ACTGG 3 cut(s) 526, 1372, 1679
Bse3DI GCAATG 4 cut(s) 187, 202, 1248, 1668
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 4 cut(s) 166, 1340, 1476, 1721
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 4 cut(s) 486, 1339, 1475, 1686
BseGI GGATG 6 cut(s) 248, 403, 482, 634, 661, 850
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 3 cut(s) 220, 1035, 1519
BseMI GCAATG 4 cut(s) 187, 202, 1248, 1668
BseMII CTCAG 4 cut(s) 870, 918, 1047, 1055
BseNI ACTGG 3 cut(s) 526, 1372, 1679
BseRI GAGGAG 1 cut(s) 944
BseXI GCAGC 6 cut(s) 85, 88, 116, 136, 280, 1134
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 2 cut(s) 141, 1515
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 2 cut(s) 192, 264
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 205, 378
BslFI GGGAC 1 cut(s) 1492
BslI CCNNNNNNNGG 3 cut(s) 220, 1035, 1519
BsmAI GTCTC 2 cut(s) 19, 1270
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 1492
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 192, 264
Bsp19I CCATGG 1 cut(s) 1686
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 4 cut(s) 871, 919, 1048, 1056
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 2 cut(s) 141, 1515
BspLI GGNNCC 3 cut(s) 1407, 1440, 1524
BspPI GGATC 6 cut(s) 576, 734, 1019, 1122, 1400, 1413
BspQI GCTCTTC 3 cut(s) 62, 697, 1194
BsrDI GCAATG 4 cut(s) 187, 202, 1248, 1668
BsrI ACTGG 3 cut(s) 526, 1372, 1679
BssECI CCNNGG 4 cut(s) 486, 1339, 1475, 1686
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 2 cut(s) 486, 1686
Bst2UI CCWGG 4 cut(s) 166, 1340, 1476, 1721
Bst4CI ACNGT 2 cut(s) 430, 1176
Bst6I CTCTTC 5 cut(s) 47, 62, 301, 697, 1194
BstACI GRCGYC 1 cut(s) 586
BstC8I GCNNGC 3 cut(s) 596, 1605, 1626
BstDEI CTNAG 7 cut(s) 640, 879, 927, 1034, 1056, 1064, 1560
BstDSI CCRYGG 1 cut(s) 1686
BstENI CCTNNNNNAGG 1 cut(s) 1033
BstF5I GGATG 6 cut(s) 248, 403, 482, 634, 661, 850
BstFNI CGCG 2 cut(s) 141, 1515
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 143
BstMAI GTCTC 2 cut(s) 19, 1270
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 4 cut(s) 138, 268, 983, 1561
BstNI CCWGG 4 cut(s) 166, 1340, 1476, 1721
BstNSI RCATGY 1 cut(s) 598
BstPAI GACNNNNGTC 1 cut(s) 1450
BstSCI CCNGG 4 cut(s) 164, 1338, 1474, 1719
BstSFI CTRYAG 1 cut(s) 1014
BstUI CGCG 2 cut(s) 141, 1515
BstV1I GCAGC 6 cut(s) 85, 88, 116, 136, 280, 1134
BstV2I GAAGAC 2 cut(s) 723, 1601
BstX2I RGATCY 3 cut(s) 568, 733, 1405
BstXI CCANNNNNNTGG 1 cut(s) 1346
BstYI RGATCY 3 cut(s) 568, 733, 1405
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 1 cut(s) 1686
BtsCI GGATG 6 cut(s) 248, 403, 482, 634, 661, 850
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 216, 519, 924
Cac8I GCNNGC 3 cut(s) 596, 1605, 1626
CfoI GCGC 2 cut(s) 129, 143
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 1 cut(s) 1336
CviAII CATG 3 cut(s) 595, 1144, 1687
CviQI GTAC 1 cut(s) 1336
DdeI CTNAG 7 cut(s) 640, 879, 927, 1034, 1056, 1064, 1560
Eam1104I CTCTTC 5 cut(s) 47, 62, 301, 697, 1194
EarI CTCTTC 5 cut(s) 47, 62, 301, 697, 1194
EciI GGCGGA 2 cut(s) 762, 1665
Ecl136II GAGCTC 2 cut(s) 190, 262
Eco130I CCWWGG 2 cut(s) 486, 1686
Eco24I GRGCYC 2 cut(s) 192, 264
Eco47III AGCGCT 1 cut(s) 128
Eco53kI GAGCTC 2 cut(s) 190, 262
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 2 cut(s) 190, 262
EcoNI CCTNNNNNAGG 1 cut(s) 1033
EcoRI GAATTC 2 cut(s) 390, 945
EcoRII CCWGG 4 cut(s) 164, 1338, 1474, 1719
EcoT14I CCWWGG 2 cut(s) 486, 1686
EcoT38I GRGCYC 2 cut(s) 192, 264
ErhI CCWWGG 2 cut(s) 486, 1686
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 3 cut(s) 598, 1147, 1690
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 1290, 1322
FaqI GGGAC 1 cut(s) 1492
FatI CATG 3 cut(s) 594, 1143, 1686
FauI CCCGC 3 cut(s) 34, 78, 1617
FbaI TGATCA 1 cut(s) 757
Fnu4HI GCNGC 8 cut(s) 6, 74, 77, 122, 125, 130, 269, 1148
FokI GGATG 6 cut(s) 235, 410, 469, 641, 668, 857
FriOI GRGCYC 2 cut(s) 192, 264
Fsp4HI GCNGC 8 cut(s) 6, 74, 77, 122, 125, 130, 269, 1148
FspBI CTAG 4 cut(s) 549, 726, 1422, 1443
GlaI GCGC 2 cut(s) 128, 142
GluI GCNGC 8 cut(s) 6, 74, 77, 122, 125, 130, 269, 1148
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 205, 378
HhaI GCGC 2 cut(s) 129, 143
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 3 cut(s) 598, 1147, 1690
Hin6I GCGC 2 cut(s) 127, 141
HinP1I GCGC 2 cut(s) 127, 141
HincII GTYRAC 3 cut(s) 516, 667, 1455
HindII GTYRAC 3 cut(s) 516, 667, 1455
HindIII AAGCTT 1 cut(s) 1259
HinfI GANTC 7 cut(s) 93, 341, 605, 782, 991, 1189, 1330
HpaII CCGG 2 cut(s) 205, 378
HphI GGTGA 5 cut(s) 11, 88, 466, 1375, 1502
Hpy166II GTNNAC 6 cut(s) 116, 340, 516, 667, 1455, 1496
Hpy188III TCNNGA 6 cut(s) 154, 395, 653, 737, 1311, 1635
Hpy8I GTNNAC 6 cut(s) 116, 340, 516, 667, 1455, 1496
HpyCH4III ACNGT 2 cut(s) 430, 1176
HpyCH4IV ACGT 3 cut(s) 243, 586, 1481
HpyCH4V TGCA 9 cut(s) 132, 195, 290, 829, 848, 977, 1150, 1222, 1280
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 268, 983, 1561
HpyF3I CTNAG 7 cut(s) 640, 879, 927, 1034, 1056, 1064, 1560
HpySE526I ACGT 3 cut(s) 243, 586, 1481
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 3 cut(s) 598, 1147, 1690
HspAI GCGC 2 cut(s) 127, 141
Ksp22I TGATCA 1 cut(s) 757
LguI GCTCTTC 3 cut(s) 62, 697, 1194
LmnI GCTCC 3 cut(s) 187, 259, 1522
Lsp1109I GCAGC 6 cut(s) 85, 88, 116, 136, 280, 1134
LweI GCATC 4 cut(s) 835, 964, 1159, 1267
MaeI CTAG 4 cut(s) 549, 726, 1422, 1443
MaeII ACGT 3 cut(s) 243, 586, 1481
MaeIII GTNAC 5 cut(s) 239, 424, 746, 1170, 1363
MfeI CAATTG 1 cut(s) 1541
MflI RGATCY 3 cut(s) 568, 733, 1405
MhlI GDGCHC 2 cut(s) 192, 264
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 1188
MseI TTAA 5 cut(s) 875, 1128, 1286, 1695, 1735
MspI CCGG 2 cut(s) 205, 378
MspR9I CCNGG 4 cut(s) 166, 1340, 1476, 1721
MunI CAATTG 1 cut(s) 1541
MvaI CCWGG 4 cut(s) 166, 1340, 1476, 1721
MvnI CGCG 2 cut(s) 141, 1515
MwoI GCNNNNNNNGC 4 cut(s) 138, 268, 983, 1561
NcoI CCATGG 1 cut(s) 1686
NlaIII CATG 3 cut(s) 598, 1147, 1690
NlaIV GGNNCC 3 cut(s) 1407, 1440, 1524
NmuCI GTSAC 4 cut(s) 239, 746, 1170, 1363
NspI RCATGY 1 cut(s) 598
PaeI GCATGC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 343
PciSI GCTCTTC 3 cut(s) 62, 697, 1194
PcsI WCGNNNNNNNCGW 1 cut(s) 1611
PdmI GAANNNNTTC 1 cut(s) 1188
PfeI GAWTC 6 cut(s) 93, 605, 782, 991, 1189, 1330
PkrI GCNGC 8 cut(s) 7, 75, 78, 123, 126, 131, 270, 1149
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PshAI GACNNNNGTC 1 cut(s) 1450
PsiI TTATAA 1 cut(s) 323
Psp124BI GAGCTC 2 cut(s) 192, 264
Psp6I CCWGG 4 cut(s) 164, 1338, 1474, 1719
PspGI CCWGG 4 cut(s) 164, 1338, 1474, 1719
PspN4I GGNNCC 3 cut(s) 1407, 1440, 1524
PspXI VCTCGAGB 1 cut(s) 343
PsuI RGATCY 3 cut(s) 568, 733, 1405
RsaI GTAC 1 cut(s) 1337
RsaNI GTAC 1 cut(s) 1336
SacI GAGCTC 2 cut(s) 192, 264
SapI GCTCTTC 3 cut(s) 62, 697, 1194
SaqAI TTAA 5 cut(s) 875, 1128, 1286, 1695, 1735
SatI GCNGC 8 cut(s) 6, 74, 77, 122, 125, 130, 269, 1148
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 4 cut(s) 166, 1340, 1476, 1721
SduI GDGCHC 2 cut(s) 192, 264
SfaNI GCATC 4 cut(s) 835, 964, 1159, 1267
SfcI CTRYAG 1 cut(s) 1014
Sfr274I CTCGAG 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 343
SmlI CTYRAG 2 cut(s) 343, 1136
SmoI CTYRAG 2 cut(s) 343, 1136
SphI GCATGC 1 cut(s) 598
SspMI CTAG 4 cut(s) 549, 726, 1422, 1443
SstI GAGCTC 2 cut(s) 192, 264
StyD4I CCNGG 4 cut(s) 164, 1338, 1474, 1719
StyI CCWWGG 2 cut(s) 486, 1686
TaaI ACNGT 2 cut(s) 430, 1176
TaiI ACGT 3 cut(s) 246, 589, 1484
TaqI TCGA 4 cut(s) 344, 405, 994, 1634
TauI GCSGC 2 cut(s) 8, 124
TfiI GAWTC 6 cut(s) 93, 605, 782, 991, 1189, 1330
Tru1I TTAA 5 cut(s) 875, 1128, 1286, 1695, 1735
Tru9I TTAA 5 cut(s) 875, 1128, 1286, 1695, 1735
TscAI CASTG 3 cut(s) 223, 526, 931
TseFI GTSAC 4 cut(s) 239, 746, 1170, 1363
TseI GCWGC 6 cut(s) 73, 76, 124, 129, 268, 1147
Tsp45I GTSAC 4 cut(s) 239, 746, 1170, 1363
TspDTI ATGAA 7 cut(s) 471, 645, 696, 906, 1038, 1132, 1311
TspGWI ACGGA 2 cut(s) 139, 288
TspRI CASTG 3 cut(s) 223, 526, 931
XagI CCTNNNNNAGG 1 cut(s) 1033
XapI RAATTY 3 cut(s) 390, 468, 945
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 1234
XhoI CTCGAG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 1188
XspI CTAG 4 cut(s) 549, 726, 1422, 1443
ZraI GACGTC 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.