Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005701

Physical Location & Seq

Genomic Coordinates Forward (+)

14599237 .. 14600123

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGAGTGATGGCCACTCTCTCTCAGTTTCCGGCCTTCCCCTCCCTCCTCTCTCCCAAACTCGTCTTCTTCGACCCGCAACAACACCAGCTCAAACTCCGGCGATGCACCGCTCAACATCCACCTTCTCCGGTACACTTCGCGGTTCGCGCTTCTTCGTCCGTCAAGAAATCCAGGAGGAAGGTGAAGAGCAATGAGGAGCTTTGCAATGAACTCATGGAGTTTATTGCTGCGGTTGGACTTCCACAAGGTCATGTTCCGTCCATGAAAGAGCTCTCGCAGAACGGAAGGAATGACCTTGCATACATTGTGAGACGGAGGGGATATAAACTTATAAGAGAGCTTCTTGCTGACTCCACGGAATCAGAATCGACGGATGTGGATGGTAATGCGGATAACTTTATAGCTGAAAATGATGATGGTCAGAAAGATATAGTGACAGGTCAATATATGGTTCTTTCTTCTAGTTTAAGTGTGAAACCTTATTTTACAGTGTATGCAACTGTTACTGATAGCCTCTCAATAATTCAAAAGGTCAGTATCAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

183

Amino Acids

20.5

Weight (kDa)

9.27

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03420
fragaria_vesca	FvH4_3g24282 FvH4_6g16490
malus_domestica	MD04G1092300.v1.1 MD12G1110100.v1.1
prunus_persica	Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1
pyrus_communis	pycom04g08670 pycom12g11100
rosa_chinensis	RchiOBHm_Chr3g0470391
rosa_laevigata	RLG00000024271
rosa_multiflora	Rmu_co8411419.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410860
rosa_rugosa	Rorug03G0108300 Rorug03G0108400
rosa_samantha	Rh3AG158600 Rh3AG158700 Rh3BG183300 Rh3CG173800 Rh3DG191600
rosa_wichuraiana	Rw3G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	2 cut(s)	143, 150
AciI	CCGC	5 cut(s)	77, 111, 143, 233, 392
AcoI	YGGCCR	1 cut(s)	12
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	5 cut(s)	91, 202, 274, 343, 407
AluI	AGCT	5 cut(s)	91, 202, 274, 343, 407
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	12, 33
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	4, 377, 413
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	199, 214
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	118, 382, 388
BseMI	GCAATG	2 cut(s)	199, 214
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	2 cut(s)	38, 212
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	143, 150
BshFI	GGCC	2 cut(s)	14, 35
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	32, 100, 131
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	14, 35
Bsp1286I	GDGCHC	1 cut(s)	276
BspACI	CCGC	5 cut(s)	77, 111, 143, 233, 392
BspANI	GGCC	2 cut(s)	14, 35
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	143, 150
BspQI	GCTCTTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	199, 214
BssECI	CCNNGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	493, 505
Bst6I	CTCTTC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	118, 382, 388
BstFNI	CGCG	2 cut(s)	143, 150
BstHHI	GCGC	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstUI	CGCG	2 cut(s)	143, 150
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	14, 35
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	3 cut(s)	118, 382, 388
BtsIMutI	CAGTG	1 cut(s)	498
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	3 cut(s)	217, 254, 265
CviJI	RGCY	8 cut(s)	14, 35, 91, 202, 274, 343, 407, 516
CviKI_1	RGCY	8 cut(s)	14, 35, 91, 202, 274, 343, 407, 516
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	3 cut(s)	220, 257, 268
FatI	CATG	3 cut(s)	216, 253, 264
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	105, 389, 395
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	14, 35
HapII	CCGG	3 cut(s)	32, 100, 131
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	220, 257, 268
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	3 cut(s)	353, 362, 368
HpaII	CCGG	3 cut(s)	32, 100, 131
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	367, 426
Hpy188III	TCNNGA	2 cut(s)	166, 544
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	46, 135, 175, 282
HpyCH4III	ACNGT	2 cut(s)	493, 505
HpyCH4V	TGCA	4 cut(s)	108, 207, 302, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	220, 257, 268
HspAI	GCGC	1 cut(s)	150
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	45, 101, 113, 144, 160, 187, 426
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	436, 505
MbiI	CCGCTC	1 cut(s)	113
MboII	GAAGA	5 cut(s)	58, 61, 147, 199, 453
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	525
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	8 cut(s)	52, 56, 59, 171, 190, 312, 527, 540
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	3 cut(s)	32, 100, 131
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	2 cut(s)	143, 150
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	220, 257, 268
NmuCI	GTSAC	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	362, 368
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PsiI	TTATAA	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	5 cut(s)	77, 111, 143, 233, 392
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	493, 505
TaqI	TCGA	2 cut(s)	72, 371
TasI	AATT	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	362, 368
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	225, 281
TspGWI	ACGGA	6 cut(s)	151, 249, 300, 331, 374, 389
TspRI	CASTG	1 cut(s)	498
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.