FvH4_6g16490

Glycogen recognition site of AMP-activated protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
10441782 .. 10446756
4975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16490.t1

Sequence Viewer

Length: 1686 bp
ATGGCCACTCTCTCTCCCTTCCTCCTCTCTCCCAAGCTCGTCTTCTTCGACCCGCACCGCCACCTCAAACTCCGGCGATGGACCGCTCACTATCCACCGGTAAACTTCGCCGTTCGCGCTTCTTCCTCCGTCAAGAAATCCAGGAGGAAGGCGAAGAGCAATGAGGAGCTTTGCGATGAGCTCCTGGAGTTCATTGCGGCGGTTGGACTTCCACCAGGTCATGTTCCCTCCATGAAAGAGCTCTCGCAGCACGGAAGAAAGGACCTTGCGTACATTGTTAGGCGGAGGGGATATAAGCTTATACGAGATCTACTTGCTGACTCGATGGAGTCAGAATCAACGGATGAGAATGATGATGGAGTTGATGGTGGTCAGAAAGATATAGTGACAGGTCAGGATCAAGAGGTGAATGATGTTGTCGAGGAATTCTCTTCCTTGAGTGAAGTTTCAGTCTTGGAAAGTAATTCTGAATCTTTGGTTACCGATCCAGTTTTGAACCATGATGACGGTGTTGTTGTACCTGTGGAATCTTCTGCGGATTTGCTTTTGCAGGATACATCCTCAAGTAATTTAGAAGTTCATGGTGAACAGGTGGATAATATGGAAGGCAATTGTCATGTGTCAAATGTTCCTACTGTCGAGAGTCATGTCAATAGTTCTGAGACTGGTACAGCCTTCAACTCCAACAAACGAAGTTGTTTACCATTAGAAATTTCCACTAATTCATCATTGGGCATGATTGAAGAGTTATCCTTGCCAACCACTGTTCCTGTCCAAGAAAACAATTCTGGTAGCTCAAATATTTCTCGGGATCTGAACTCTGGTGGACAACATGGCATGTTGTTTGAATCTGATACTGATTGGTCCTCGGATAGAAAAGCCTTACATAGAGGTCAGGATGGGAAGATTGATAATATGGGTGAAGACGTTTCCTTGTCGAGTAAAGATTCAATTATGGAAGAGGAGAACCATTCTCGTTCAGATCTTGAATCACAAAACTCCGATGAAGCGCCTGTAAAACCTCCAGCAGATTTGTCCTTCGAGGAAAAGGTTAAAACATTTGTGAAGAATGGAGACATAGATACGCTTGAAGATAACATTGAAGAATTCAAGAGTGGCAAACAGTTTGGGAATGCTGAAGAAGTTCAACTACGAACTCCTACTTCAGAGCACTTAAAACATTTTATTGAGGGAAGTGATGCAACAGCTGATGATGCTACTTCATTAGCTGATGCACGGAGTTCTCTACCTGACAACAATGTGGATGTTAAGACAAGTGAAAAGGATGATCAACAGGATATTAGTCGTCTCAAGTCCATGCTGCATCAGAAGGAGTTAGAATTGTCTCAGTTGAAAGAACAGATTGAGAAGGAACAGCATGCATTGTCGGTCTTGCAAGCCAACGCAGAAACAGCAATCAGCGAAGCACAAAAACTTATTCTCGAAAAAGATGCAGAGTTGCTTACGGCTGAAGAAAACCTTTCAGGACTGGTGGAGGTTGAGATTCAGTATTGTGGTGATGGTGAAATTGTGGAGGTGACTGGTAGCTTCAATGGTTGGCATCATCAGATTAGGTTGGATCCACAGCCACCATCCAGTATCACAGACCATGCTGGATCAAGGTCTTGCATTCTTTGTCTCCAAAATTGTCTGTATAATTTGGCATCACACTTCTATCTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

562

Amino Acids

61.88

Weight (kDa)

4.63

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AccII CGCG 1 cut(s) 117
AciI CCGC 7 cut(s) 53, 58, 84, 197, 200, 283, 536
AclWI GGATC 6 cut(s) 405, 479, 819, 1574, 1587, 1624
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 425, 711, 1106
AcuI CTGAAG 3 cut(s) 1149, 1158, 1491
AfaI GTAC 3 cut(s) 272, 519, 670
AgeI ACCGGT 1 cut(s) 97
AjnI CCWGG 3 cut(s) 140, 183, 214
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 9 cut(s) 37, 169, 181, 241, 298, 795, 1208, 1229, 1548
AluI AGCT 9 cut(s) 37, 169, 181, 241, 298, 795, 1208, 1229, 1548
Alw21I GWGCWC 3 cut(s) 183, 243, 1173
Alw26I GTCTC 5 cut(s) 656, 1068, 1313, 1350, 1643
AlwI GGATC 6 cut(s) 405, 479, 819, 1574, 1587, 1624
Ama87I CYCGRG 1 cut(s) 807
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 247, 1321
ApoI RAATTY 3 cut(s) 425, 711, 1106
AsiGI ACCGGT 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 2 cut(s) 119, 1012
AspS9I GGNCC 3 cut(s) 81, 262, 864
AsuHPI GGTGA 6 cut(s) 418, 596, 932, 1529, 1535, 1549
AvaI CYCGRG 1 cut(s) 807
AvaII GGWCC 3 cut(s) 81, 262, 864
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1579
BanII GRGCYC 2 cut(s) 183, 243
BarI GAAGNNNNNNTAC 2 cut(s) 1134, 1166
BbsI GAAGAC 2 cut(s) 34, 930
Bbv12I GWGCWC 3 cut(s) 183, 243, 1173
BbvI GCAGC 2 cut(s) 259, 1308
BccI CCATC 7 cut(s) 72, 319, 350, 359, 893, 1514, 1600
BceAI ACGGC 2 cut(s) 95, 1482
BcgI CGANNNNNNTGC 2 cut(s) 1433, 1467
BciT130I CCWGG 3 cut(s) 142, 185, 216
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 1288
BcoDI GTCTC 5 cut(s) 656, 1068, 1313, 1350, 1643
BfoI RGCGCY 1 cut(s) 1013
BfuI GTATCC 1 cut(s) 547
BglII AGATCT 2 cut(s) 307, 982
BisI GCNGC 3 cut(s) 198, 248, 1322
BlsI GCNGC 3 cut(s) 199, 249, 1323
Bme1390I CCNGG 3 cut(s) 142, 185, 216
Bme18I GGWCC 3 cut(s) 81, 262, 864
BmeT110I CYCGRG 1 cut(s) 807
BmgT120I GGNCC 3 cut(s) 81, 262, 864
BmiI GGNNCC 1 cut(s) 1581
BmrFI CCNGG 3 cut(s) 142, 185, 216
BmsI GCATC 7 cut(s) 1189, 1204, 1222, 1333, 1441, 1570, 1673
BpiI GAAGAC 2 cut(s) 34, 930
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 2 cut(s) 206, 1008
BpuEI CTTGAG 3 cut(s) 457, 547, 1295
BsaJI CCNNGG 1 cut(s) 867
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 5 cut(s) 488, 670, 1494, 1546, 1596
Bse3DI GCAATG 2 cut(s) 166, 192
BseBI CCWGG 3 cut(s) 142, 185, 216
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 6 cut(s) 349, 557, 904, 1270, 1291, 1592
BseMI GCAATG 2 cut(s) 166, 192
BseMII CTCAG 2 cut(s) 651, 1361
BseNI ACTGG 5 cut(s) 488, 670, 1494, 1546, 1596
BseRI GAGGAG 3 cut(s) 14, 179, 977
BseXI GCAGC 2 cut(s) 259, 1308
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 97
BsiHKAI GWGCWC 3 cut(s) 183, 243, 1173
BsiHKCI CYCGRG 1 cut(s) 807
BsiSI CCGG 2 cut(s) 73, 98
BsmAI GTCTC 5 cut(s) 656, 1068, 1313, 1350, 1643
BsmBI CGTCTC 1 cut(s) 1313
BsmI GAATGC 2 cut(s) 1138, 1629
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 807
Bsp1286I GDGCHC 3 cut(s) 183, 243, 1173
Bsp143I GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
BspACI CCGC 7 cut(s) 53, 58, 84, 197, 200, 283, 536
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 652, 1360
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 1581
BspPI GGATC 6 cut(s) 405, 479, 819, 1574, 1587, 1624
BspQI GCTCTTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 166, 192
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 5 cut(s) 488, 670, 1494, 1546, 1596
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
Bst2UI CCWGG 3 cut(s) 142, 185, 216
Bst4CI ACNGT 4 cut(s) 509, 637, 766, 1125
Bst6I CTCTTC 4 cut(s) 149, 436, 738, 954
BstC8I GCNNGC 2 cut(s) 1380, 1398
BstDEI CTNAG 2 cut(s) 660, 1347
BstEII GGTNACC 1 cut(s) 478
BstF5I GGATG 6 cut(s) 349, 557, 904, 1270, 1291, 1592
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 2 cut(s) 119, 1012
BstKTI GATC 8 cut(s) 310, 400, 487, 814, 985, 1291, 1582, 1619
BstMAI GTCTC 5 cut(s) 656, 1068, 1313, 1350, 1643
BstMBI GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
BstMWI GCNNNNNNNGC 4 cut(s) 116, 247, 1214, 1412
BstNI CCWGG 3 cut(s) 142, 185, 216
BstNSI RCATGY 2 cut(s) 841, 1382
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 140, 183, 214
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 259, 1308
BstV2I GAAGAC 2 cut(s) 34, 930
BstX2I RGATCY 4 cut(s) 307, 811, 982, 1579
BstYI RGATCY 4 cut(s) 307, 811, 982, 1579
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 91, 189
BtsCI GGATG 6 cut(s) 349, 557, 904, 1270, 1291, 1592
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 2 cut(s) 1380, 1398
CfoI GCGC 2 cut(s) 119, 1012
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 81, 262, 864
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 3 cut(s) 271, 518, 669
CspAI ACCGGT 1 cut(s) 97
CviQI GTAC 3 cut(s) 271, 518, 669
DdeI CTNAG 2 cut(s) 660, 1347
DpnI GATC 8 cut(s) 309, 399, 486, 813, 984, 1290, 1581, 1618
DpnII GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 149, 436, 738, 954
EarI CTCTTC 4 cut(s) 149, 436, 738, 954
EciI GGCGGA 1 cut(s) 298
Ecl136II GAGCTC 2 cut(s) 181, 241
Eco24I GRGCYC 2 cut(s) 183, 243
Eco47I GGWCC 3 cut(s) 81, 262, 864
Eco53kI GAGCTC 2 cut(s) 181, 241
Eco57I CTGAAG 3 cut(s) 1149, 1158, 1491
Eco88I CYCGRG 1 cut(s) 807
Eco91I GGTNACC 1 cut(s) 478
EcoICRI GAGCTC 2 cut(s) 181, 241
EcoO109I RGGNCCY 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 478
EcoRI GAATTC 2 cut(s) 425, 1106
EcoRII CCWGG 3 cut(s) 140, 183, 214
EcoT22I ATGCAT 1 cut(s) 1384
EcoT38I GRGCYC 2 cut(s) 183, 243
Esp3I CGTCTC 1 cut(s) 1313
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 1464, 1496
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 1288
Fnu4HI GCNGC 3 cut(s) 198, 248, 1322
FokI GGATG 6 cut(s) 356, 544, 911, 1277, 1298, 1579
FriOI GRGCYC 2 cut(s) 183, 243
Fsp4HI GCNGC 3 cut(s) 198, 248, 1322
GlaI GCGC 2 cut(s) 118, 1011
GluI GCNGC 3 cut(s) 198, 248, 1322
GsuI CTGGAG 2 cut(s) 206, 1008
HaeII RGCGCY 1 cut(s) 1013
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 73, 98
HhaI GCGC 2 cut(s) 119, 1012
Hin6I GCGC 2 cut(s) 117, 1010
HinP1I GCGC 2 cut(s) 117, 1010
HindIII AAGCTT 1 cut(s) 296
HpaII CCGG 2 cut(s) 73, 98
HphI GGTGA 6 cut(s) 418, 596, 932, 1529, 1535, 1549
Hpy166II GTNNAC 4 cut(s) 103, 587, 701, 827
Hpy8I GTNNAC 4 cut(s) 103, 587, 701, 827
HpyAV CCTTC 7 cut(s) 28, 142, 599, 685, 1048, 1324, 1363
HpyCH4III ACNGT 4 cut(s) 509, 637, 766, 1125
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 8 cut(s) 550, 1202, 1235, 1324, 1382, 1396, 1454, 1629
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 247, 1214, 1412
HpyF3I CTNAG 2 cut(s) 660, 1347
HpySE526I ACGT 1 cut(s) 927
HspAI GCGC 2 cut(s) 117, 1010
Ksp22I TGATCA 1 cut(s) 1288
Kzo9I GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 166, 186
Lsp1109I GCAGC 2 cut(s) 259, 1308
LweI GCATC 7 cut(s) 1189, 1204, 1222, 1333, 1441, 1570, 1673
MabI ACCWGGT 1 cut(s) 214
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 3 cut(s) 385, 478, 1537
MalI GATC 8 cut(s) 309, 399, 486, 813, 984, 1290, 1581, 1618
MbiI CCGCTC 1 cut(s) 86
MboI GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
MfeI CAATTG 1 cut(s) 610
MflI RGATCY 4 cut(s) 307, 811, 982, 1579
MhlI GDGCHC 3 cut(s) 183, 243, 1173
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 314, 338, 652
MmeI TCCRAC 3 cut(s) 184, 708, 1557
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1384
MroXI GAANNNNTTC 1 cut(s) 1143
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 1053, 1175, 1269, 1684
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1208
MspI CCGG 2 cut(s) 73, 98
MspR9I CCNGG 3 cut(s) 142, 185, 216
MunI CAATTG 1 cut(s) 610
Mva1269I GAATGC 2 cut(s) 1138, 1629
MvaI CCWGG 3 cut(s) 142, 185, 216
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 4 cut(s) 116, 247, 1214, 1412
NdeII GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
NlaIV GGNNCC 1 cut(s) 1581
NmuCI GTSAC 2 cut(s) 385, 1537
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 2 cut(s) 841, 1382
PaeI GCATGC 1 cut(s) 1382
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 1138, 1629
PdmI GAANNNNTTC 1 cut(s) 1143
PfeI GAWTC 7 cut(s) 335, 470, 527, 848, 947, 989, 1504
PfoI TCCNGGA 2 cut(s) 140, 183
PinAI ACCGGT 1 cut(s) 97
PkrI GCNGC 3 cut(s) 199, 249, 1323
PleI GAGTC 3 cut(s) 314, 337, 651
PpsI GAGTC 3 cut(s) 314, 337, 651
PpuMI RGGWCCY 1 cut(s) 262
Psp124BI GAGCTC 2 cut(s) 183, 243
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 3 cut(s) 140, 183, 214
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 3 cut(s) 140, 183, 214
PspN4I GGNNCC 1 cut(s) 1581
PspPI GGNCC 3 cut(s) 81, 262, 864
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 4 cut(s) 307, 811, 982, 1579
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 3 cut(s) 272, 519, 670
RsaNI GTAC 3 cut(s) 271, 518, 669
SacI GAGCTC 2 cut(s) 183, 243
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 4 cut(s) 1053, 1175, 1269, 1684
SatI GCNGC 3 cut(s) 198, 248, 1322
Sau3AI GATC 8 cut(s) 307, 397, 484, 811, 982, 1288, 1579, 1616
Sau96I GGNCC 3 cut(s) 81, 262, 864
SchI GAGTC 3 cut(s) 314, 338, 652
ScrFI CCNGG 3 cut(s) 142, 185, 216
SduI GDGCHC 3 cut(s) 183, 243, 1173
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 7 cut(s) 1189, 1204, 1222, 1333, 1441, 1570, 1673
SinI GGWCC 3 cut(s) 81, 262, 864
SmlI CTYRAG 3 cut(s) 436, 562, 1310
SmoI CTYRAG 3 cut(s) 436, 562, 1310
SphI GCATGC 1 cut(s) 1382
SsiI CCGC 7 cut(s) 53, 58, 84, 197, 200, 283, 536
SspI AATATT 1 cut(s) 802
SstI GAGCTC 2 cut(s) 183, 243
StyD4I CCNGG 3 cut(s) 140, 183, 214
TaaI ACNGT 4 cut(s) 509, 637, 766, 1125
TaiI ACGT 1 cut(s) 930
TaqI TCGA 7 cut(s) 48, 323, 420, 639, 938, 1041, 1443
TaqII GACCGA 1 cut(s) 1378
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 7 cut(s) 335, 470, 527, 848, 947, 989, 1504
Tru1I TTAA 4 cut(s) 1053, 1175, 1269, 1684
Tru9I TTAA 4 cut(s) 1053, 1175, 1269, 1684
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 2 cut(s) 385, 1537
TseI GCWGC 2 cut(s) 247, 1321
Tsp45I GTSAC 2 cut(s) 385, 1537
TspDTI ATGAA 6 cut(s) 181, 248, 569, 714, 1020, 1212
TspGWI ACGGA 4 cut(s) 118, 267, 356, 1252
TspRI CASTG 1 cut(s) 769
VpaK11BI GGWCC 3 cut(s) 81, 262, 864
XapI RAATTY 3 cut(s) 425, 711, 1106
XceI RCATGY 2 cut(s) 841, 1382
XmnI GAANNNNTTC 1 cut(s) 1143
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.