Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005701

Physical Location & Seq

Genomic Coordinates Reverse (-)

8727230 .. 8730957

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAAGCTGTGGAACAGAAAGAAAACCCATTTTCCTCTACTGGTCTTCGTCTTCTCTCTGTTCTTGGTTTTCTCAATTCTCCACAATGAACGCAGCATTTTGGAAATTCAAGACAACCCAGATCGTGCTCCTCACCATCAAATTCCAGTCACTTATGTAAAGCCGAATCGTCTCACCCATCAAAACCATGCTCCAGAGGTGTTGGATAGATTCAGTACATGCAACTCCACCAGAGAGTACAGTGGGAGGAAAATAGCGTGGAGTGGTCATCTTACGCCGAAGTACGGTGGCCGGAGGGAGAGTTTGGAGAGCTGTGACGTGTTTTCCGGCAAATGGGTGTTTGATAATTCTTCGTATCCGCTGTACAATGAGGCCGAGTGCCCTTACATGTCGGACCAGTTGGCCTGCCACAAACATGGAAGGTCTGACTTGGATTATCAGTATTGGAGATGGCAACCCAATAATTGCAACTTGAAGAGATGGAATGTGATTGACATGTGGGAGAAGTTGAGGGGCAAAAGGTTGATGTTTGTAGGGGATTCATTAAACAGAGGTCAGTGGATATCAATGGTCTGCTTGTTGCAATCAGTGATTCCAGCGGATAAGAGATCCATGTCACCGAATGCCGCACTTACCATTTTCCGAGCCGAGGAATATAATGCTACTGTGGAATTTCTTTGGGGCCCTCTTCTAGTAGAATCTAATTCTGATGACCCAGTGAATCACAGATTGGATGATCGAATAATCCGTCCAGATTCAGTTCTTAAACATGCATCAATATGGGAGAATGCAGACATATTGATTTTCAATTCCTACCTGTGGTGGAGACAAGGCCCAGTTAAGCTTTTATGGAGCACTGAAGCAAATGCTGCGTGTGAAGAATTAGATGGTATAGGAGCCATGGAATTGGCCATGGGCGCTTGGGCAGACTGGGCTTCTAAAGTTGATCCCCTCAAGAAGCGGGTCTTCTTTGTCACAATGTCTCCTACACATCTCTGGAGTCAAGAGTGGAAGCCAGGAAATGAAGGTAATTGTTACAATGAGAAATCCCCCATTGAGTTGGAGGGCTACTGGGGAAGTGGCTCTGATCTCCCTACTATGAGCATGGTGGACAATGTCCTCAGTAAGTTGAGTTCAAAGGTTTCAGTTCTCAACATTACTCAACTGTCAGAGTACCGGAAAGATGGTCATCCTTCCATTTACCGGAAATTTTGGGAGGCACTAAAGCCTGAACAGTTGTCTAACCCAGCGAGTTACTCTGATTGCATACACTGGTGCTTGCCTGGTGTACCTGATGTTTGGAACGAGTTGCTATACCATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

442

Amino Acids

51.34

Weight (kDa)

6.44

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	103 - 157	1.9e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	160 - 440	1.3e-80	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03420
fragaria_vesca	FvH4_3g24282 FvH4_6g16490
malus_domestica	MD04G1092300.v1.1 MD12G1110100.v1.1
prunus_persica	Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1
pyrus_communis	pycom04g08670 pycom12g11100
rosa_chinensis	RchiOBHm_Chr3g0470391
rosa_laevigata	RLG00000024271
rosa_multiflora	Rmu_co8411419.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410860
rosa_rugosa	Rorug03G0108300 Rorug03G0108400
rosa_samantha	Rh3AG158600 Rh3AG158700 Rh3BG183300 Rh3CG173800 Rh3DG191600
rosa_wichuraiana	Rw3G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	359, 599, 627, 961
AclWI	GGATC	2 cut(s)	603, 941
AcoI	YGGCCR	2 cut(s)	289, 909
AcsI	RAATTY	4 cut(s)	105, 141, 671, 1208
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	6 cut(s)	217, 239, 284, 365, 1175, 1290
AfiI	CCNNNNNNNGG	5 cut(s)	284, 333, 649, 819, 1203
AflIII	ACRYGT	3 cut(s)	318, 387, 495
AgsI	TTSAA	4 cut(s)	110, 475, 808, 1137
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	1015, 1282
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AluBI	AGCT	3 cut(s)	7, 312, 844
AluI	AGCT	3 cut(s)	7, 312, 844
Alw21I	GWGCWC	2 cut(s)	130, 857
Alw26I	GTCTC	3 cut(s)	176, 820, 987
AlwI	GGATC	2 cut(s)	603, 941
AoxI	GGCC	6 cut(s)	289, 372, 402, 682, 832, 909
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	2 cut(s)	93, 869
ApoI	RAATTY	4 cut(s)	105, 141, 671, 1208
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	4 cut(s)	394, 682, 683, 833
AsuHPI	GGTGA	3 cut(s)	125, 166, 609
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	2 cut(s)	383, 686
BalI	TGGCCA	1 cut(s)	911
BanII	GRGCYC	1 cut(s)	686
BbsI	GAAGAC	3 cut(s)	37, 43, 958
Bbv12I	GWGCWC	2 cut(s)	130, 857
BbvI	GCAGC	2 cut(s)	105, 856
BccI	CCATC	6 cut(s)	144, 186, 444, 474, 881, 1178
BciT130I	CCWGG	2 cut(s)	1017, 1284
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	3 cut(s)	176, 820, 987
BfaI	CTAG	1 cut(s)	692
BfoI	RGCGCY	1 cut(s)	921
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	3 cut(s)	94, 627, 870
BlsI	GCNGC	3 cut(s)	95, 628, 871
Bme1390I	CCNGG	2 cut(s)	1017, 1284
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	4 cut(s)	394, 682, 683, 833
BmiI	GGNNCC	3 cut(s)	683, 684, 898
BmrFI	CCNGG	2 cut(s)	1017, 1284
BmrI	ACTGGG	4 cut(s)	710, 830, 940, 1081
BmsI	GCATC	1 cut(s)	782
BmuI	ACTGGG	4 cut(s)	710, 830, 940, 1081
BpiI	GAAGAC	3 cut(s)	37, 43, 958
BpmI	CTGGAG	2 cut(s)	177, 1018
BpuEI	CTTGAG	1 cut(s)	938
BsaBI	GATNNNNATC	1 cut(s)	1188
BsaJI	CCNNGG	3 cut(s)	648, 900, 912
BsaWI	WCCGGW	2 cut(s)	1176, 1203
BsaXI	ACNNNNNCTCC	4 cut(s)	286, 316, 967, 997
Bsc4I	CCNNNNNNNGG	5 cut(s)	284, 333, 649, 819, 1203
Bse1I	ACTGG	8 cut(s)	45, 146, 397, 716, 836, 935, 1076, 1277
Bse8I	GATNNNNATC	1 cut(s)	1188
BseBI	CCWGG	2 cut(s)	1017, 1284
BseDI	CCNNGG	3 cut(s)	648, 900, 912
BseGI	GGATG	2 cut(s)	739, 1189
BseJI	GATNNNNATC	1 cut(s)	1188
BseLI	CCNNNNNNNGG	5 cut(s)	284, 333, 649, 819, 1203
BseMII	CTCAG	1 cut(s)	1135
BseNI	ACTGG	8 cut(s)	45, 146, 397, 716, 836, 935, 1076, 1277
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	2 cut(s)	383, 686
BseXI	GCAGC	2 cut(s)	105, 856
BseYI	CCCAGC	1 cut(s)	1246
BshFI	GGCC	6 cut(s)	291, 374, 404, 684, 834, 911
BsiHKAI	GWGCWC	2 cut(s)	130, 857
BsiSI	CCGG	4 cut(s)	292, 327, 1177, 1204
BslI	CCNNNNNNNGG	5 cut(s)	284, 333, 649, 819, 1203
BsmAI	GTCTC	3 cut(s)	176, 820, 987
BsmBI	CGTCTC	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	628, 793
BsnI	GGCC	6 cut(s)	291, 374, 404, 684, 834, 911
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	4 cut(s)	130, 383, 686, 857
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	5 cut(s)	121, 608, 736, 946, 1087
Bsp19I	CCATGG	2 cut(s)	900, 912
BspACI	CCGC	4 cut(s)	359, 599, 627, 961
BspANI	GGCC	6 cut(s)	291, 374, 404, 684, 834, 911
BspCNI	CTCAG	1 cut(s)	1134
BspLI	GGNNCC	3 cut(s)	683, 684, 898
BspPI	GGATC	2 cut(s)	603, 941
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	8 cut(s)	45, 146, 397, 716, 836, 935, 1076, 1277
BssECI	CCNNGG	3 cut(s)	648, 900, 912
BssMI	GATC	5 cut(s)	121, 608, 736, 946, 1087
BssT1I	CCWWGG	2 cut(s)	900, 912
Bst2UI	CCWGG	2 cut(s)	1017, 1284
Bst4CI	ACNGT	5 cut(s)	242, 287, 667, 1167, 1236
Bst6I	CTCTTC	2 cut(s)	470, 693
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	406, 1280
BstDEI	CTNAG	1 cut(s)	1121
BstDSI	CCRYGG	2 cut(s)	900, 912
BstF5I	GGATG	2 cut(s)	739, 1189
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	5 cut(s)	124, 611, 739, 949, 1090
BstMAI	GTCTC	3 cut(s)	176, 820, 987
BstMBI	GATC	5 cut(s)	121, 608, 736, 946, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	869, 917, 932
BstNI	CCWGG	2 cut(s)	1017, 1284
BstNSI	RCATGY	4 cut(s)	222, 391, 499, 773
BstSCI	CCNGG	2 cut(s)	1015, 1282
BstSLI	GKGCMC	2 cut(s)	383, 686
BstV1I	GCAGC	2 cut(s)	105, 856
BstV2I	GAAGAC	3 cut(s)	37, 43, 958
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	3 cut(s)	416, 907, 1060
BstYI	RGATCY	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	6 cut(s)	291, 374, 404, 684, 834, 911
BtgI	CCRYGG	2 cut(s)	900, 912
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	739, 1189
BtsIMutI	CAGTG	6 cut(s)	247, 563, 594, 723, 855, 1270
Cac8I	GCNNGC	2 cut(s)	406, 1280
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	4 cut(s)	394, 682, 683, 833
Csp6I	GTAC	6 cut(s)	216, 238, 283, 364, 1174, 1289
CviQI	GTAC	6 cut(s)	216, 238, 283, 364, 1174, 1289
DdeI	CTNAG	1 cut(s)	1121
DpnI	GATC	5 cut(s)	123, 610, 738, 948, 1089
DpnII	GATC	5 cut(s)	121, 608, 736, 946, 1087
EaeI	YGGCCR	2 cut(s)	289, 909
Eam1104I	CTCTTC	2 cut(s)	470, 693
EarI	CTCTTC	2 cut(s)	470, 693
Eco130I	CCWWGG	2 cut(s)	900, 912
Eco24I	GRGCYC	1 cut(s)	686
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	879
EcoO109I	RGGNCCY	2 cut(s)	682, 683
EcoRII	CCWGG	2 cut(s)	1015, 1282
EcoRV	GATATC	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	900, 912
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	686
ErhI	CCWWGG	2 cut(s)	900, 912
Esp3I	CGTCTC	1 cut(s)	176
FalI	AAGNNNNNCTT	2 cut(s)	950, 982
FauI	CCCGC	1 cut(s)	954
Fnu4HI	GCNGC	3 cut(s)	94, 627, 870
FokI	GGATG	2 cut(s)	746, 1176
FriOI	GRGCYC	1 cut(s)	686
Fsp4HI	GCNGC	3 cut(s)	94, 627, 870
FspBI	CTAG	1 cut(s)	692
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	3 cut(s)	94, 627, 870
GsaI	CCCAGC	1 cut(s)	1250
GsuI	CTGGAG	2 cut(s)	177, 1018
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	6 cut(s)	291, 374, 404, 684, 834, 911
HapII	CCGG	4 cut(s)	292, 327, 1177, 1204
HhaI	GCGC	1 cut(s)	920
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	8 cut(s)	166, 210, 539, 592, 698, 721, 755, 1000
HpaII	CCGG	4 cut(s)	292, 327, 1177, 1204
HphI	GGTGA	3 cut(s)	125, 166, 609
Hpy166II	GTNNAC	2 cut(s)	1111, 1289
Hpy188I	TCNGA	7 cut(s)	394, 427, 644, 709, 1087, 1171, 1261
Hpy188III	TCNNGA	6 cut(s)	110, 194, 752, 955, 997, 1004
Hpy8I	GTNNAC	2 cut(s)	1111, 1289
HpyAV	CCTTC	3 cut(s)	414, 1019, 1203
HpyCH4III	ACNGT	5 cut(s)	242, 287, 667, 1167, 1236
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	222, 468, 583, 773, 791, 1266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	869, 917, 932
HpyF3I	CTNAG	1 cut(s)	1121
HpySE526I	ACGT	1 cut(s)	318
HspAI	GCGC	1 cut(s)	918
Kzo9I	GATC	5 cut(s)	121, 608, 736, 946, 1087
LmnI	GCTCC	4 cut(s)	133, 196, 852, 896
Lsp1109I	GCAGC	2 cut(s)	105, 856
LweI	GCATC	1 cut(s)	782
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	6 cut(s)	148, 314, 615, 973, 1034, 1253
MalI	GATC	5 cut(s)	123, 610, 738, 948, 1089
MboI	GATC	5 cut(s)	121, 608, 736, 946, 1087
MboII	GAAGA	7 cut(s)	37, 43, 342, 487, 680, 890, 958
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	4 cut(s)	130, 383, 686, 857
MlsI	TGGCCA	1 cut(s)	911
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	1 cut(s)	1009
MmeI	TCCRAC	3 cut(s)	183, 372, 1041
Mox20I	TGGCCA	1 cut(s)	911
Mph1103I	ATGCAT	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	3 cut(s)	545, 765, 840
MslI	CAYNNNNRTG	2 cut(s)	414, 778
Msp20I	TGGCCA	1 cut(s)	911
MspA1I	CMGCKG	2 cut(s)	361, 599
MspI	CCGG	4 cut(s)	292, 327, 1177, 1204
MspR9I	CCNGG	2 cut(s)	1017, 1284
Mva1269I	GAATGC	2 cut(s)	628, 793
MvaI	CCWGG	2 cut(s)	1017, 1284
MwoI	GCNNNNNNNGC	3 cut(s)	869, 917, 932
NcoI	CCATGG	2 cut(s)	900, 912
NdeII	GATC	5 cut(s)	121, 608, 736, 946, 1087
NlaIV	GGNNCC	3 cut(s)	683, 684, 898
NmeAIII	GCCGAG	2 cut(s)	400, 673
NmuCI	GTSAC	4 cut(s)	148, 314, 615, 973
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	4 cut(s)	222, 391, 499, 773
PciI	ACATGT	2 cut(s)	387, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	745
PctI	GAATGC	2 cut(s)	628, 793
PfeI	GAWTC	7 cut(s)	166, 210, 539, 592, 698, 721, 755
PflFI	GACNNNGTC	1 cut(s)	1115
PkrI	GCNGC	3 cut(s)	95, 628, 871
PleI	GAGTC	1 cut(s)	1008
PpsI	GAGTC	1 cut(s)	1008
PscI	ACATGT	2 cut(s)	387, 495
Psp6I	CCWGG	2 cut(s)	1015, 1282
PspFI	CCCAGC	1 cut(s)	1246
PspGI	CCWGG	2 cut(s)	1015, 1282
PspN4I	GGNNCC	3 cut(s)	683, 684, 898
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	4 cut(s)	394, 682, 683, 833
PsrI	GAACNNNNNNTAC	2 cut(s)	1117, 1149
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	1115
RsaI	GTAC	6 cut(s)	217, 239, 284, 365, 1175, 1290
RsaNI	GTAC	6 cut(s)	216, 238, 283, 364, 1174, 1289
RseI	CAYNNNNRTG	2 cut(s)	414, 778
SaqAI	TTAA	3 cut(s)	545, 765, 840
SatI	GCNGC	3 cut(s)	94, 627, 870
Sau3AI	GATC	5 cut(s)	121, 608, 736, 946, 1087
Sau96I	GGNCC	4 cut(s)	394, 682, 683, 833
SchI	GAGTC	1 cut(s)	1009
ScrFI	CCNGG	2 cut(s)	1017, 1284
SduI	GDGCHC	4 cut(s)	130, 383, 686, 857
SfaNI	GCATC	1 cut(s)	782
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	414, 778
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SsiI	CCGC	4 cut(s)	359, 599, 627, 961
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	1015, 1282
StyI	CCWWGG	2 cut(s)	900, 912
TaaI	ACNGT	5 cut(s)	242, 287, 667, 1167, 1236
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	739
TatI	WGTACW	3 cut(s)	215, 237, 363
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	7 cut(s)	166, 210, 539, 592, 698, 721, 755
Tru1I	TTAA	3 cut(s)	545, 765, 840
Tru9I	TTAA	3 cut(s)	545, 765, 840
TscAI	CASTG	6 cut(s)	247, 563, 594, 723, 862, 1277
TseFI	GTSAC	4 cut(s)	148, 314, 615, 973
TseI	GCWGC	2 cut(s)	93, 869
Tsp45I	GTSAC	4 cut(s)	148, 314, 615, 973
TspDTI	ATGAA	4 cut(s)	17, 102, 531, 1038
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	6 cut(s)	247, 563, 594, 723, 862, 1277
Tth111I	GACNNNGTC	1 cut(s)	1115
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	105, 141, 671, 1208
XceI	RCATGY	4 cut(s)	222, 391, 499, 773
XspI	CTAG	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.