Rroxscaffold_6G00410860

Glycogen recognition site of AMP-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005701
Physical Location & Seq
Reverse (-)
33252494 .. 33257721
5228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410860.1

Sequence Viewer

Length: 1818 bp
ATGAGAGTGATGGCCACTCTCTCTCAGTTTCCGGCCTTCCCCTCCCTCCTCTCTCCCAAACTCGTCTTCTTCGACCCGCAACAACACCAGCTCAAACTCCGGCGATGCACCGCTCGACGTCCACCGTCTCCGGTACACTTCGCGGTTCGCGCTTCTTCGTCCGTCAAGAAATCCAGGAGGAAGGTGAAGAGCAATGAGGAGCTTTGCAATGAACTCGTGGAGTTTATTGCTGCGGTTGGACTTCCACAAGGTCATGTTCCCTCCATGAAAGAGCTATCGCAGAACGGAAGGAATGACCTTGCATACATTGTGAGACGGAGGGGATATAAACTTATAAGAGAGCTTCTTGCGGACTCCACAGAATCAGAATCGACGGATGTGGATGGTAATGCGGATAACTTTATAGCTGAAAATGAGGATGGTCAGAAAGATATAGTGACAGGTCAGTATCAAGAGGTGAATGATGTGGTTGAGGAATTCTCATCCTCGAGTGAAGTTTCAATCTTGGAAAGTAGTTCTGAAGCTTTGGTTACTGATCCAGTTCTGAAACACGATGATGGTGTTGATGTACCTGTGGAATCTTTGGCGGATTCGCTTTTGCAGGACACATCCTCGGGTAATTTAGAAGGTCATGGTGAACGGGTGGATGGTATGGAAGGCAATGGTCTTGTGTCAAATGTTCCTATTATTGAGAGTCATGTCAATAGTTCTAAGATTGATACAGCCTTCAACTCCGACCACCATACACCAGTAGAAATTTGCACCAATTCATCATTGGATGTACTAGAAGATTTATCCTTACCGACCACCATTCCCATCAAACAAAATGATTTTGATAGTCCAAATATTGGTTGGGATCTGAACTCTGATGGACAACCTAGTGTGCCCATAGAATCTGGGGCCCATTGGTCCTCAGATAAAAAAGCCTTAGATAGGGACCGGGATGGGAAGGTTGACAATATGGCTGATGAAGTTGCATTGTCAACCAAAGCTTCAGTTGTGGAAGAGGAAGATCATCACTCTAGTTCAAATCTTGAACTAAATGAGAATTCTGATGACGATAGCGATGCACCAGTAAAATATCCAGTGAATTTGTCCTTGGAGGAAAAGGTGACAAAATTTATGCAGAATGGAGACCTGGATGCACTTGAAGATAACATCTATGGTGTATCAATTGAGAGTGATGCTGAAGAAATCAAGAGCAGCAATAAGTTTGGGAATGCTGAAGAAGTTCAACTAAGCACTCCTACTTCAGATGATGCTACTTCATTAGCTGATTCGCAGAGTTCTCTATCTGACAAGAATTTGGATGTTAAGACAAGTGAAAGGGAGGATCAACATGATATTAGTCGTCTCAAGTCCATGCTGCATCAGAAGGAGTTAGAATTGTCTCGGTTGAAAGAACAGATTGAGAAGGAACAGCATGCCTTGTCGGTCTTGCAAGCAAACGCAGAAACAGCAATCAGCGAAGCACAAAAGCTTATCTGCGAAAAAGATGCAGAGTTGCTTGCTGCTGAAGAAAACCTTTCAGGACTAGTGGAGGTTGAGATCCAGTATCATGGTGATGGTGAAATTGTGGAGGTGACCGGTAGCTTCAATGGTTGGCATCATCAGATTAAATTGGATCCACAGCCACCATCCAGTATCATAGACCACGCTGGATCAAGGAAATCCAGGCTGTGGTCAACGATGCTATGGCTTTACCCAGGAGTATATGAGATAAAATTCCTTGTTGACGGCTATTGGAGTATTGATCCTCAAAGAGAAACAGTTACTAGGGGTACAATATGTAATAACATTCTCAGAGTTGACGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMPK1_CBM

Protein Analysis

605

Amino Acids

66.86

Weight (kDa)

4.58

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 514 - 603 2.8e-15 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AatII GACGTC 1 cut(s) 121
AccB7I CCANNNNNTGG 2 cut(s) 848, 1680
AccBSI CCGCTC 1 cut(s) 113
AccII CGCG 2 cut(s) 143, 150
AciI CCGC 7 cut(s) 77, 111, 143, 233, 350, 392, 587
AclWI GGATC 8 cut(s) 530, 864, 1341, 1543, 1619, 1632, 1669, 1748
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 7 cut(s) 476, 756, 1048, 1090, 1118, 1303, 1724
AcuI CTGAAG 6 cut(s) 540, 978, 1209, 1236, 1245, 1536
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 4 cut(s) 135, 570, 783, 1783
AfiI CCNNNNNNNGG 3 cut(s) 848, 933, 1680
AgeI ACCGGT 1 cut(s) 1586
AgsI TTSAA 8 cut(s) 501, 730, 1029, 1037, 1151, 1235, 1399, 1597
AhlI ACTAGT 1 cut(s) 1534
AjnI CCWGG 4 cut(s) 173, 1137, 1673, 1705
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 1082, 1114
Alw26I GTCTC 5 cut(s) 132, 307, 1128, 1358, 1395
AlwI GGATC 8 cut(s) 530, 864, 1341, 1543, 1619, 1632, 1669, 1748
Ama87I CYCGRG 2 cut(s) 487, 613
AoxI GGCC 3 cut(s) 12, 33, 900
ApaI GGGCCC 1 cut(s) 904
ApeKI GCWGC 4 cut(s) 230, 1203, 1366, 1511
ApoI RAATTY 7 cut(s) 476, 756, 1048, 1090, 1118, 1303, 1724
AsiGI ACCGGT 1 cut(s) 1586
Asp700I GAANNNNTTC 1 cut(s) 1230
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 4 cut(s) 900, 901, 909, 937
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 7 cut(s) 196, 469, 647, 1123, 1574, 1580, 1594
AvaI CYCGRG 2 cut(s) 487, 613
AvaII GGWCC 2 cut(s) 909, 937
BaeGI GKGCMC 2 cut(s) 888, 904
BalI TGGCCA 1 cut(s) 14
BamHI GGATCC 1 cut(s) 1624
BanII GRGCYC 1 cut(s) 904
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 4 cut(s) 217, 1215, 1353, 1498
BceAI ACGGC 1 cut(s) 1753
BcgI CGANNNNNNTGC 6 cut(s) 196, 230, 1049, 1083, 1478, 1512
BciT130I CCWGG 4 cut(s) 175, 1139, 1675, 1707
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 5 cut(s) 132, 307, 1128, 1358, 1395
BcuI ACTAGT 1 cut(s) 1534
BfaI CTAG 5 cut(s) 785, 879, 1023, 1535, 1776
BisI GCNGC 4 cut(s) 231, 1204, 1367, 1512
BlsI GCNGC 4 cut(s) 232, 1205, 1368, 1513
Bme1390I CCNGG 5 cut(s) 175, 941, 1139, 1675, 1707
Bme18I GGWCC 2 cut(s) 909, 937
BmeT110I CYCGRG 2 cut(s) 487, 613
BmgT120I GGNCC 4 cut(s) 900, 901, 909, 937
BmiI GGNNCC 4 cut(s) 901, 902, 938, 1626
BmrFI CCNGG 5 cut(s) 175, 941, 1139, 1675, 1707
BmsI GCATC 9 cut(s) 95, 1057, 1132, 1174, 1249, 1378, 1486, 1615, 1680
BpiI GAAGAC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpuEI CTTGAG 1 cut(s) 1340
BpuMI CCSGG 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 1128
BsaJI CCNNGG 3 cut(s) 612, 1098, 1705
BsaWI WCCGGW 2 cut(s) 130, 1586
Bsc4I CCNNNNNNNGG 3 cut(s) 848, 933, 1680
Bse118I RCCGGY 1 cut(s) 1586
Bse1I ACTGG 6 cut(s) 539, 749, 1073, 1085, 1552, 1641
Bse3DI GCAATG 3 cut(s) 199, 214, 667
BseBI CCWGG 4 cut(s) 175, 1139, 1675, 1707
BseDI CCNNGG 3 cut(s) 612, 1098, 1705
BseLI CCNNNNNNNGG 3 cut(s) 848, 933, 1680
BseMI GCAATG 3 cut(s) 199, 214, 667
BseMII CTCAG 3 cut(s) 38, 927, 1816
BseNI ACTGG 6 cut(s) 539, 749, 1073, 1085, 1552, 1641
BseRI GAGGAG 2 cut(s) 38, 212
BseSI GKGCMC 2 cut(s) 888, 904
BseXI GCAGC 4 cut(s) 217, 1215, 1353, 1498
Bsh1236I CGCG 2 cut(s) 143, 150
BshFI GGCC 3 cut(s) 14, 35, 902
BshTI ACCGGT 1 cut(s) 1586
BsiHKCI CYCGRG 2 cut(s) 487, 613
BsiSI CCGG 5 cut(s) 32, 100, 131, 940, 1587
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 3 cut(s) 848, 933, 1680
BsmAI GTCTC 5 cut(s) 132, 307, 1128, 1358, 1395
BsmBI CGTCTC 3 cut(s) 132, 307, 1358
BsmFI GGGAC 1 cut(s) 950
BsmI GAATGC 1 cut(s) 1225
BsnI GGCC 3 cut(s) 14, 35, 902
Bso31I GGTCTC 1 cut(s) 1128
BsoBI CYCGRG 2 cut(s) 487, 613
Bsp120I GGGCCC 1 cut(s) 900
Bsp1286I GDGCHC 2 cut(s) 888, 904
Bsp143I GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
BspACI CCGC 7 cut(s) 77, 111, 143, 233, 350, 392, 587
BspANI GGCC 3 cut(s) 14, 35, 902
BspCNI CTCAG 3 cut(s) 37, 926, 1815
BspFNI CGCG 2 cut(s) 143, 150
BspLI GGNNCC 4 cut(s) 901, 902, 938, 1626
BspPI GGATC 8 cut(s) 530, 864, 1341, 1543, 1619, 1632, 1669, 1748
BspQI GCTCTTC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 1128
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 3 cut(s) 199, 214, 667
BsrFI RCCGGY 1 cut(s) 1586
BsrI ACTGG 6 cut(s) 539, 749, 1073, 1085, 1552, 1641
BssAI RCCGGY 1 cut(s) 1586
BssECI CCNNGG 3 cut(s) 612, 1098, 1705
BssMI GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
BssNI GRCGYC 1 cut(s) 118
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 1098
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 4 cut(s) 175, 1139, 1675, 1707
Bst4CI ACNGT 3 cut(s) 126, 1771, 1814
Bst6I CTCTTC 2 cut(s) 182, 999
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 1425, 1443, 1509
BstDEI CTNAG 6 cut(s) 24, 711, 913, 928, 1238, 1802
BstEII GGTNACC 1 cut(s) 1582
BstENI CCTNNNNNAGG 1 cut(s) 931
BstFNI CGCG 2 cut(s) 143, 150
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 8 cut(s) 538, 859, 1015, 1336, 1551, 1627, 1664, 1756
BstMAI GTCTC 5 cut(s) 132, 307, 1128, 1358, 1395
BstMBI GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
BstMWI GCNNNNNNNGC 2 cut(s) 149, 1457
BstNI CCWGG 4 cut(s) 175, 1139, 1675, 1707
BstNSI RCATGY 1 cut(s) 1427
BstPI GGTNACC 1 cut(s) 1582
BstSCI CCNGG 5 cut(s) 173, 939, 1137, 1673, 1705
BstSLI GKGCMC 2 cut(s) 888, 904
BstUI CGCG 2 cut(s) 143, 150
BstV1I GCAGC 4 cut(s) 217, 1215, 1353, 1498
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 3 cut(s) 856, 1548, 1624
BstXI CCANNNNNNTGG 1 cut(s) 1559
BstYI RGATCY 3 cut(s) 856, 1548, 1624
BsuRI GGCC 3 cut(s) 14, 35, 902
BtgZI GCGATG 2 cut(s) 118, 1080
BtsIMutI CAGTG 1 cut(s) 1092
Cac8I GCNNGC 3 cut(s) 1425, 1443, 1509
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 1586
Cfr13I GGNCC 4 cut(s) 900, 901, 909, 937
Csp6I GTAC 4 cut(s) 134, 569, 782, 1782
CspAI ACCGGT 1 cut(s) 1586
CviAII CATG 8 cut(s) 254, 265, 632, 698, 1340, 1363, 1424, 1559
CviQI GTAC 4 cut(s) 134, 569, 782, 1782
DdeI CTNAG 6 cut(s) 24, 711, 913, 928, 1238, 1802
DpnI GATC 8 cut(s) 537, 858, 1014, 1335, 1550, 1626, 1663, 1755
DpnII GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 182, 999
EarI CTCTTC 2 cut(s) 182, 999
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 1098
Eco24I GRGCYC 1 cut(s) 904
Eco31I GGTCTC 1 cut(s) 1128
Eco47I GGWCC 2 cut(s) 909, 937
Eco57I CTGAAG 6 cut(s) 540, 978, 1209, 1236, 1245, 1536
Eco88I CYCGRG 2 cut(s) 487, 613
Eco91I GGTNACC 1 cut(s) 1582
EcoNI CCTNNNNNAGG 1 cut(s) 931
EcoO109I RGGNCCY 1 cut(s) 900
EcoO65I GGTNACC 1 cut(s) 1582
EcoRI GAATTC 2 cut(s) 476, 1048
EcoRII CCWGG 4 cut(s) 173, 1137, 1673, 1705
EcoT14I CCWWGG 1 cut(s) 1098
EcoT38I GRGCYC 1 cut(s) 904
ErhI CCWWGG 1 cut(s) 1098
Esp3I CGTCTC 3 cut(s) 132, 307, 1358
FaeI CATG 8 cut(s) 257, 268, 635, 701, 1343, 1366, 1427, 1562
FalI AAGNNNNNCTT 2 cut(s) 1509, 1541
FaqI GGGAC 1 cut(s) 950
FatI CATG 8 cut(s) 253, 264, 631, 697, 1339, 1362, 1423, 1558
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 231, 1204, 1367, 1512
FriOI GRGCYC 1 cut(s) 904
Fsp4HI GCNGC 4 cut(s) 231, 1204, 1367, 1512
FspBI CTAG 5 cut(s) 785, 879, 1023, 1535, 1776
GlaI GCGC 1 cut(s) 151
GluI GCNGC 4 cut(s) 231, 1204, 1367, 1512
HaeIII GGCC 3 cut(s) 14, 35, 902
HapII CCGG 5 cut(s) 32, 100, 131, 940, 1587
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 8 cut(s) 257, 268, 635, 701, 1343, 1366, 1427, 1562
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 5 cut(s) 955, 984, 1686, 1735, 1810
HindII GTYRAC 5 cut(s) 955, 984, 1686, 1735, 1810
HindIII AAGCTT 3 cut(s) 522, 990, 1478
HinfI GANTC 8 cut(s) 353, 362, 368, 578, 590, 694, 893, 1277
HpaII CCGG 5 cut(s) 32, 100, 131, 940, 1587
HphI GGTGA 7 cut(s) 196, 469, 647, 1123, 1574, 1580, 1594
Hpy166II GTNNAC 8 cut(s) 122, 136, 638, 955, 984, 1686, 1735, 1810
Hpy188III TCNNGA 5 cut(s) 166, 452, 1034, 1198, 1530
Hpy8I GTNNAC 8 cut(s) 122, 136, 638, 955, 984, 1686, 1735, 1810
Hpy99I CGWCG 2 cut(s) 120, 376
HpyAV CCTTC 9 cut(s) 46, 175, 282, 620, 650, 736, 943, 1369, 1408
HpyCH4III ACNGT 3 cut(s) 126, 1771, 1814
HpyCH4IV ACGT 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 1457
HpyF3I CTNAG 6 cut(s) 24, 711, 913, 928, 1238, 1802
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 8 cut(s) 257, 268, 635, 701, 1343, 1366, 1427, 1562
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 4 cut(s) 217, 1215, 1353, 1498
LweI GCATC 9 cut(s) 95, 1057, 1132, 1174, 1249, 1378, 1486, 1615, 1680
MaeI CTAG 5 cut(s) 785, 879, 1023, 1535, 1776
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 5 cut(s) 436, 529, 1111, 1582, 1771
MalI GATC 8 cut(s) 537, 858, 1014, 1335, 1550, 1626, 1663, 1755
MbiI CCGCTC 1 cut(s) 113
MboI GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
MfeI CAATTG 1 cut(s) 1173
MflI RGATCY 3 cut(s) 856, 1548, 1624
MhlI GDGCHC 2 cut(s) 888, 904
MlsI TGGCCA 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 2 cut(s) 347, 703
MmeI TCCRAC 2 cut(s) 217, 759
Mox20I TGGCCA 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 1230
MscI TGGCCA 1 cut(s) 14
MseI TTAA 3 cut(s) 1314, 1617, 1816
MslI CAYNNNNRTG 2 cut(s) 555, 1563
Msp20I TGGCCA 1 cut(s) 14
MspI CCGG 5 cut(s) 32, 100, 131, 940, 1587
MspR9I CCNGG 5 cut(s) 175, 941, 1139, 1675, 1707
MunI CAATTG 1 cut(s) 1173
Mva1269I GAATGC 1 cut(s) 1225
MvaI CCWGG 4 cut(s) 175, 1139, 1675, 1707
MvnI CGCG 2 cut(s) 143, 150
MwoI GCNNNNNNNGC 2 cut(s) 149, 1457
NciI CCSGG 1 cut(s) 941
NdeII GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
NlaIII CATG 8 cut(s) 257, 268, 635, 701, 1343, 1366, 1427, 1562
NlaIV GGNNCC 4 cut(s) 901, 902, 938, 1626
NmuCI GTSAC 3 cut(s) 436, 1111, 1582
NspI RCATGY 1 cut(s) 1427
PaeI GCATGC 1 cut(s) 1427
PaeR7I CTCGAG 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 1225
PdmI GAANNNNTTC 1 cut(s) 1230
PfeI GAWTC 6 cut(s) 362, 368, 578, 590, 893, 1277
PflMI CCANNNNNTGG 2 cut(s) 848, 1680
PfoI TCCNGGA 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 1586
PkrI GCNGC 4 cut(s) 232, 1205, 1368, 1513
PleI GAGTC 2 cut(s) 347, 702
PpsI GAGTC 2 cut(s) 347, 702
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 4 cut(s) 173, 1137, 1673, 1705
PspEI GGTNACC 1 cut(s) 1582
PspGI CCWGG 4 cut(s) 173, 1137, 1673, 1705
PspN4I GGNNCC 4 cut(s) 901, 902, 938, 1626
PspOMI GGGCCC 1 cut(s) 900
PspPI GGNCC 4 cut(s) 900, 901, 909, 937
PspXI VCTCGAGB 1 cut(s) 487
PsuI RGATCY 3 cut(s) 856, 1548, 1624
RsaI GTAC 4 cut(s) 135, 570, 783, 1783
RsaNI GTAC 4 cut(s) 134, 569, 782, 1782
RseI CAYNNNNRTG 2 cut(s) 555, 1563
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 3 cut(s) 1314, 1617, 1816
SatI GCNGC 4 cut(s) 231, 1204, 1367, 1512
Sau3AI GATC 8 cut(s) 535, 856, 1012, 1333, 1548, 1624, 1661, 1753
Sau96I GGNCC 4 cut(s) 900, 901, 909, 937
SchI GAGTC 2 cut(s) 347, 703
ScrFI CCNGG 5 cut(s) 175, 941, 1139, 1675, 1707
SduI GDGCHC 2 cut(s) 888, 904
SfaNI GCATC 9 cut(s) 95, 1057, 1132, 1174, 1249, 1378, 1486, 1615, 1680
Sfr274I CTCGAG 1 cut(s) 487
SinI GGWCC 2 cut(s) 909, 937
SlaI CTCGAG 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 555, 1563
SmlI CTYRAG 2 cut(s) 487, 1355
SmoI CTYRAG 2 cut(s) 487, 1355
SpeI ACTAGT 1 cut(s) 1534
SphI GCATGC 1 cut(s) 1427
SsiI CCGC 7 cut(s) 77, 111, 143, 233, 350, 392, 587
SspI AATATT 1 cut(s) 847
SspMI CTAG 5 cut(s) 785, 879, 1023, 1535, 1776
StyD4I CCNGG 5 cut(s) 173, 939, 1137, 1673, 1705
StyI CCWWGG 1 cut(s) 1098
TaaI ACNGT 3 cut(s) 126, 1771, 1814
TaiI ACGT 1 cut(s) 121
TaqI TCGA 4 cut(s) 72, 115, 371, 488
TaqII GACCGA 1 cut(s) 1423
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 6 cut(s) 362, 368, 578, 590, 893, 1277
Tru1I TTAA 3 cut(s) 1314, 1617, 1816
Tru9I TTAA 3 cut(s) 1314, 1617, 1816
TscAI CASTG 1 cut(s) 1092
TseFI GTSAC 3 cut(s) 436, 1111, 1582
TseI GCWGC 4 cut(s) 230, 1203, 1366, 1511
Tsp45I GTSAC 3 cut(s) 436, 1111, 1582
TspDTI ATGAA 5 cut(s) 225, 281, 759, 984, 1257
TspGWI ACGGA 4 cut(s) 151, 300, 331, 389
TspRI CASTG 1 cut(s) 1092
Van91I CCANNNNNTGG 2 cut(s) 848, 1680
VpaK11BI GGWCC 2 cut(s) 909, 937
XagI CCTNNNNNAGG 1 cut(s) 931
XapI RAATTY 7 cut(s) 476, 756, 1048, 1090, 1118, 1303, 1724
XceI RCATGY 1 cut(s) 1427
XcmI CCANNNNNNNNNTGG 2 cut(s) 772, 849
XhoI CTCGAG 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 1230
XspI CTAG 5 cut(s) 785, 879, 1023, 1535, 1776
ZraI GACGTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.