AT5G03420

Glycogen recognition site of AMP-activated protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
845601 .. 848914
3314 bp
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UTR
Exon/CDS
Intron
AT5G03420.1

Sequence Viewer

Length: 1797 bp
ATGGCGACGATTTCTCAGATACCTTTCTCTATCTCCTTCCCTTGTTTCGAATTTCGGAAACCATCGTTCTACTATCATCAGCCTCAACTTTTTGTTTCGTACTTGAATTCCACGAAGAAGCATAGTTTTATCTGTTTCGCATGTTCCACCAAACAAACCAGAGTTCGTAAGAGAGTGAAGAGCAATGAGGAGCTTCGGAGTGAGATTATGCAGTTCGTTGCTTTGGCTGGGCTTCCTGAAGGTCACGTGCCGTCCATGAAGGAACTCTCCGCACATGGAAGAGTTGATCTTGCTAACATTGTAAGACGAAGAGGCTATAAATTCATCAAGGAACTTGTTGCAAACTCTGGTATGGAGGAAGACTGTAACGAGCTAGTCGCTGACTCTGAGGATAATAATACCAACATTGAAACAGGAGGAAGCCGAGCTTGTTTGGAAGATTCGTCAACAGATTTAAGTAAGGAGGCTGAAAAACAAGGAAGTTTGAGTAAAGATGAATCGTCACTGGCTGGAGTTTTGAGCTTGGAAAACTCTTTTTCTAACTTGGGTGACAGTAATCATTCAGGAGAAATCACAGAAAAAATTTTCAAGATTGAGAGTGTGGAGCTCAATGAGATAGCTGACATTGAAAACTCATCGTCTGAAGCTTCAGTATTTGCAAACCATTCTCAAGATTTATATGATACTTCAAGCTGTCCTGACATAGAAGCAGGCAATGTTTCGATGACAGAGGATGAGGAGGTCAACGATGTGGACAAAGATTTCTCTCTTACGTTTGATCATTACACCAGTCCTACCTCTAATCATTACACTAGTCCAGATCTCAATTCCATCAAACATGTTGACATTGCTACTGGATCCTCGTATGATCTGACCTCAGAGAATACCATGACAAATGTAGAGAATTTTCAGAATCAGCAGATTGATGATATTGCTGCAAATCGTTCTGGTAGTGCTGATGATAGTTTAGTTGAGTCTGAGGATAATGATTGGATGTCAGGGCTTTCTTCTTGCACTTCAAGCATAGAAGAAAAAACAACCAGATTTATTCAGAATGGATACTTGGATACAGTTGGTGCTGATGAAAATGACATACCCAATGAAAGCTGTCCTGAAGAAAGTTCAGAAACAACCAAAGGTGGTGAGTACATAGGAGACAGTCTTGGAGGTCCGAGAATTATGAGTACACCACTAAATGGAAGTGCCCTAGCATTGAAGGAGATAATCCATGCTACAGAAGTTAATAGCTCTGACAGGAATAGTGATCAGAGAGATGGGAGTGTTGGCTTGGACACGGATCCACATCATGAGACCAGGAAACGGGAAAATCAGGTTGAAATTGATCGGCTGAGGTTCATGCTGGATCAAAAAGAGCTGGAGTTGTCAAGGCTGAAAGAGCAGATTGAAAAAGAAAAGCTGTCTCTTTCAGTTCTCCAAAGACAGGCTGAAACAGAGATCCAAAAGGCCCAAATGCTTATCTCAGAGAAGGAAGTTGAATTGCAAGAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGGTTGTGATTGAATATTGCGGAGATGGTAACGCTGTGGAAGTGACTGGCAGTTTCAATGGGTGGCAACACCGAGTGGGAATGGAACTACAAGCATCCAAGTCAATAGGGAAACAGAAATGCTGGTCGACATTACTGTGGTTATATCCCGGTACATATGAGATAAAGTTCATCGTGGACGGGCAATGGATAACGGATCCTCAAAAAGATTCGGTTACAAGAGGACATATCTCAAACAACATTCTCAAAGTAGACAGCCAATGA

Protein Analysis

598

Amino Acids

66.57

Weight (kDa)

4.58

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 513 - 596 2.3e-17 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1196
AccI GTMKAC 2 cut(s) 1661, 1785
AciI CCGC 2 cut(s) 270, 1554
AclWI GGATC 8 cut(s) 852, 865, 1292, 1305, 1371, 1450, 1724, 1737
AcsI RAATTY 5 cut(s) 50, 106, 320, 582, 904
AcuI CTGAAG 4 cut(s) 258, 633, 663, 1134
AcvI CACGTG 1 cut(s) 247
AdeI CACNNNGTG 1 cut(s) 1609
AfaI GTAC 4 cut(s) 101, 1148, 1186, 1687
AfiI CCNNNNNNNGG 3 cut(s) 1196, 1320, 1441
AflIII ACRYGT 1 cut(s) 838
AhlI ACTAGT 1 cut(s) 812
AjnI CCWGG 1 cut(s) 1313
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 3 cut(s) 1149, 1304, 1425
AlwI GGATC 8 cut(s) 852, 865, 1292, 1305, 1371, 1450, 1724, 1737
AoxI GGCC 1 cut(s) 1464
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 5 cut(s) 50, 106, 320, 582, 904
AspS9I GGNCC 2 cut(s) 1169, 1465
AsuC2I CCSGG 1 cut(s) 1683
AsuHPI GGTGA 2 cut(s) 560, 1154
AsuII TTCGAA 1 cut(s) 48
AvaII GGWCC 1 cut(s) 1169
BaeGI GKGCMC 1 cut(s) 1207
BamHI GGATCC 3 cut(s) 857, 1297, 1729
BanII GRGCYC 1 cut(s) 609
BbrPI CACGTG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 609
BbvCI CCTCAGC 2 cut(s) 1349, 1509
BbvI GCAGC 1 cut(s) 922
BccI CCATC 4 cut(s) 70, 839, 1268, 1553
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 1315
BciVI GTATCC 2 cut(s) 1052, 1060
BclI TGATCA 2 cut(s) 778, 1264
BcnI CCSGG 1 cut(s) 1683
BcoDI GTCTC 3 cut(s) 1149, 1304, 1425
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 3 cut(s) 374, 813, 1208
BfmI CTRYAG 1 cut(s) 1233
BfuI GTATCC 2 cut(s) 1052, 1060
BglII AGATCT 1 cut(s) 820
BisI GCNGC 1 cut(s) 936
BlsI GCNGC 1 cut(s) 937
Bme1390I CCNGG 2 cut(s) 1315, 1683
Bme18I GGWCC 1 cut(s) 1169
BmgT120I GGNCC 2 cut(s) 1169, 1465
BmiI GGNNCC 3 cut(s) 859, 1299, 1731
BmrFI CCNGG 2 cut(s) 1315, 1683
BmsI GCATC 1 cut(s) 1637
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 2 cut(s) 531, 1397
Bpu10I CCTNAGC 2 cut(s) 1349, 1509
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 1683
BsaAI YACGTR 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 1302
BsaI GGTCTC 1 cut(s) 1304
Bsc4I CCNNNNNNNGG 3 cut(s) 1196, 1320, 1441
Bse1I ACTGG 4 cut(s) 510, 789, 859, 1585
Bse3DI GCAATG 4 cut(s) 190, 721, 846, 1724
Bse8I GATNNNNATC 1 cut(s) 1302
BseBI CCWGG 1 cut(s) 1315
BseGI GGATG 3 cut(s) 739, 999, 1628
BseJI GATNNNNATC 1 cut(s) 1302
BseLI CCNNNNNNNGG 3 cut(s) 1196, 1320, 1441
BseMI GCAATG 4 cut(s) 190, 721, 846, 1724
BseMII CTCAG 7 cut(s) 29, 378, 891, 969, 1340, 1494, 1500
BseNI ACTGG 4 cut(s) 510, 789, 859, 1585
BseRI GAGGAG 2 cut(s) 203, 752
BseSI GKGCMC 1 cut(s) 1207
BseXI GCAGC 1 cut(s) 922
BseYI CCCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 1466
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 1 cut(s) 1683
BslI CCNNNNNNNGG 3 cut(s) 1196, 1320, 1441
BsmAI GTCTC 3 cut(s) 1149, 1304, 1425
BsnI GGCC 1 cut(s) 1466
Bso31I GGTCTC 1 cut(s) 1304
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 609, 1207
BspACI CCGC 2 cut(s) 270, 1554
BspANI GGCC 1 cut(s) 1466
BspCNI CTCAG 7 cut(s) 28, 379, 890, 970, 1341, 1493, 1501
BspHI TCATGA 1 cut(s) 1306
BspLI GGNNCC 3 cut(s) 859, 1299, 1731
BspPI GGATC 8 cut(s) 852, 865, 1292, 1305, 1371, 1450, 1724, 1737
BspQI GCTCTTC 1 cut(s) 173
BspT104I TTCGAA 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 1304
BsrDI GCAATG 4 cut(s) 190, 721, 846, 1724
BsrI ACTGG 4 cut(s) 510, 789, 859, 1585
Bst2UI CCWGG 1 cut(s) 1315
Bst4CI ACNGT 5 cut(s) 365, 554, 1072, 1160, 1671
Bst6I CTCTTC 3 cut(s) 173, 274, 304
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 7 cut(s) 15, 387, 877, 978, 1349, 1480, 1509
BstF5I GGATG 3 cut(s) 739, 999, 1628
BstMAI GTCTC 3 cut(s) 1149, 1304, 1425
BstMWI GCNNNNNNNGC 2 cut(s) 1020, 1396
BstNI CCWGG 1 cut(s) 1315
BstNSI RCATGY 2 cut(s) 144, 842
BstSCI CCNGG 2 cut(s) 1313, 1681
BstSFI CTRYAG 1 cut(s) 1233
BstSLI GKGCMC 1 cut(s) 1207
BstV1I GCAGC 1 cut(s) 922
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 5 cut(s) 820, 857, 1297, 1455, 1729
BstYI RGATCY 5 cut(s) 820, 857, 1297, 1455, 1729
BsuI GTATCC 2 cut(s) 1052, 1060
BsuRI GGCC 1 cut(s) 1466
BtsCI GGATG 3 cut(s) 739, 999, 1628
BtsIMutI CAGTG 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 712
CciI TCATGA 1 cut(s) 1306
Cfr13I GGNCC 2 cut(s) 1169, 1465
Csp6I GTAC 4 cut(s) 100, 1147, 1185, 1686
CviAII CATG 8 cut(s) 141, 256, 275, 839, 889, 1229, 1307, 1357
CviQI GTAC 4 cut(s) 100, 1147, 1185, 1686
DdeI CTNAG 7 cut(s) 15, 387, 877, 978, 1349, 1480, 1509
DraIII CACNNNGTG 1 cut(s) 1609
Eam1104I CTCTTC 3 cut(s) 173, 274, 304
EarI CTCTTC 3 cut(s) 173, 274, 304
Ecl136II GAGCTC 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 1304
Eco47I GGWCC 1 cut(s) 1169
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 4 cut(s) 258, 633, 663, 1134
Eco72I CACGTG 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 1313
EcoT38I GRGCYC 1 cut(s) 609
FaeI CATG 8 cut(s) 144, 259, 278, 842, 892, 1232, 1310, 1360
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FatI CATG 8 cut(s) 140, 255, 274, 838, 888, 1228, 1306, 1356
FauNDI CATATG 1 cut(s) 1690
FbaI TGATCA 2 cut(s) 778, 1264
FblI GTMKAC 2 cut(s) 1661, 1785
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 3 cut(s) 746, 1006, 1615
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 3 cut(s) 374, 813, 1208
GluI GCNGC 1 cut(s) 936
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 2 cut(s) 531, 1397
HaeIII GGCC 1 cut(s) 1466
HapII CCGG 1 cut(s) 1683
Hin1II CATG 8 cut(s) 144, 259, 278, 842, 892, 1232, 1310, 1360
HincII GTYRAC 4 cut(s) 447, 745, 844, 1662
HindII GTYRAC 4 cut(s) 447, 745, 844, 1662
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 6 cut(s) 383, 440, 497, 913, 974, 1742
HpaII CCGG 1 cut(s) 1683
HphI GGTGA 2 cut(s) 560, 1154
Hpy166II GTNNAC 8 cut(s) 447, 745, 754, 844, 1187, 1662, 1711, 1786
Hpy188III TCNNGA 9 cut(s) 236, 564, 589, 671, 698, 818, 1112, 1307, 1524
Hpy8I GTNNAC 8 cut(s) 447, 745, 754, 844, 1187, 1662, 1711, 1786
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 46, 233, 253, 1210, 1480
HpyCH4III ACNGT 5 cut(s) 365, 554, 1072, 1160, 1671
HpyCH4IV ACGT 2 cut(s) 246, 773
HpyCH4V TGCA 7 cut(s) 211, 341, 659, 938, 1014, 1501, 1531
HpyF10VI GCNNNNNNNGC 2 cut(s) 1020, 1396
HpyF3I CTNAG 7 cut(s) 15, 387, 877, 978, 1349, 1480, 1509
HpySE526I ACGT 2 cut(s) 246, 773
Hsp92II CATG 8 cut(s) 144, 259, 278, 842, 892, 1232, 1310, 1360
Ksp22I TGATCA 2 cut(s) 778, 1264
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 2 cut(s) 190, 604
Lsp1109I GCAGC 1 cut(s) 922
LweI GCATC 1 cut(s) 1637
MaeI CTAG 3 cut(s) 374, 813, 1208
MaeII ACGT 2 cut(s) 246, 773
MaeIII GTNAC 7 cut(s) 242, 365, 501, 548, 1562, 1576, 1747
MboII GAAGA 9 cut(s) 127, 190, 291, 321, 371, 449, 999, 1040, 1127
MflI RGATCY 5 cut(s) 820, 857, 1297, 1455, 1729
MhlI GDGCHC 2 cut(s) 609, 1207
MluCI AATT 9 cut(s) 50, 106, 320, 582, 826, 904, 1176, 1338, 1496
MlyI GAGTC 2 cut(s) 377, 983
MseI TTAA 2 cut(s) 455, 1242
MslI CAYNNNNRTG 1 cut(s) 1669
MspI CCGG 1 cut(s) 1683
MspR9I CCNGG 2 cut(s) 1315, 1683
MvaI CCWGG 1 cut(s) 1315
MwoI GCNNNNNNNGC 2 cut(s) 1020, 1396
NciI CCSGG 1 cut(s) 1683
NdeI CATATG 1 cut(s) 1690
NlaIII CATG 8 cut(s) 144, 259, 278, 842, 892, 1232, 1310, 1360
NlaIV GGNNCC 3 cut(s) 859, 1299, 1731
NmeAIII GCCGAG 1 cut(s) 449
NmuCI GTSAC 4 cut(s) 242, 501, 548, 1576
NspI RCATGY 2 cut(s) 144, 842
NspV TTCGAA 1 cut(s) 48
PagI TCATGA 1 cut(s) 1306
PciI ACATGT 1 cut(s) 838
PciSI GCTCTTC 1 cut(s) 173
PfeI GAWTC 4 cut(s) 440, 497, 913, 1742
PflMI CCANNNNNTGG 1 cut(s) 1196
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 2 cut(s) 377, 982
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 2 cut(s) 377, 982
Ppu21I YACGTR 1 cut(s) 247
PscI ACATGT 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 1313
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 1313
PspN4I GGNNCC 3 cut(s) 859, 1299, 1731
PspPI GGNCC 2 cut(s) 1169, 1465
PsuI RGATCY 5 cut(s) 820, 857, 1297, 1455, 1729
RsaI GTAC 4 cut(s) 101, 1148, 1186, 1687
RsaNI GTAC 4 cut(s) 100, 1147, 1185, 1686
RseI CAYNNNNRTG 1 cut(s) 1669
SacI GAGCTC 1 cut(s) 609
SalI GTCGAC 1 cut(s) 1660
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 455, 1242
SatI GCNGC 1 cut(s) 936
Sau96I GGNCC 2 cut(s) 1169, 1465
SchI GAGTC 2 cut(s) 377, 983
ScrFI CCNGG 2 cut(s) 1315, 1683
SduI GDGCHC 2 cut(s) 609, 1207
SfaNI GCATC 1 cut(s) 1637
SfcI CTRYAG 1 cut(s) 1233
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 1 cut(s) 1169
SmiMI CAYNNNNRTG 1 cut(s) 1669
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
SpeI ACTAGT 1 cut(s) 812
Sse9I AATT 9 cut(s) 50, 106, 320, 582, 826, 904, 1176, 1338, 1496
SsiI CCGC 2 cut(s) 270, 1554
SspI AATATT 1 cut(s) 1550
SspMI CTAG 3 cut(s) 374, 813, 1208
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 1313, 1681
TaaI ACNGT 5 cut(s) 365, 554, 1072, 1160, 1671
TaiI ACGT 2 cut(s) 249, 776
TaqI TCGA 3 cut(s) 48, 722, 1661
TasI AATT 9 cut(s) 50, 106, 320, 582, 826, 904, 1176, 1338, 1496
TatI WGTACW 2 cut(s) 1146, 1184
TfiI GAWTC 4 cut(s) 440, 497, 913, 1742
Tru1I TTAA 2 cut(s) 455, 1242
Tru9I TTAA 2 cut(s) 455, 1242
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 4 cut(s) 242, 501, 548, 1576
TseI GCWGC 1 cut(s) 935
Tsp45I GTSAC 4 cut(s) 242, 501, 548, 1576
TspDTI ATGAA 7 cut(s) 272, 313, 510, 1098, 1116, 1345, 1693
TspGWI ACGGA 2 cut(s) 1310, 1742
TspRI CASTG 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 1196
VpaK11BI GGWCC 1 cut(s) 1169
XapI RAATTY 5 cut(s) 50, 106, 320, 582, 904
XceI RCATGY 2 cut(s) 144, 842
XmiI GTMKAC 2 cut(s) 1661, 1785
XspI CTAG 3 cut(s) 374, 813, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.