Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411419.1

Orthogroup ID

OG0005701

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1082

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 715 bp

atgtggatgtatcaagaggtgaatgatgtggttgaggaattctcatccttgagtgaagtttcaatcttggaaagtagttctgaagctttggttactgatccagttctgaaacacgatgatggtgttgatgtacctgtggaatctttggtggattcacttttgcaggacacatcctcaggtaatttagaaggtcatggtgaacgggtggatagtatggaaggcaatggtcgtgtgtcaaatgttcctattattgagagtcgtgtcaatagttctaagattggtacagccttcaactccgaccaccatacaccagtagaaatttgcaccaattcatcattggatgtactagaagatttatccttaccgaccaccattcccatcaaacaaaatgattctgatagtccaaatattggttgggatctgaactctgatggacaacctagtgtgcccatagaatctgggacccattggtcctcagataaaaaggccttacatagggaccgggatgggaaggttgacaatatggctgatgaagttgcattgtcaaccaaagcttcagttatggaagaggaagatcatcactctagttcagatcttgaactaaatcagaattctgatgacgatagcgatgcaccagtaaaatatccagtgaatttgtccttggaggaaaaggtgacagaatttatgcagaatggagacctggatgcacttgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

238

Amino Acids

25.99

Weight (kDa)

4.13

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03420
fragaria_vesca	FvH4_3g24282 FvH4_6g16490
malus_domestica	MD04G1092300.v1.1 MD12G1110100.v1.1
prunus_persica	Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1 Prupe.7G128700_v2.0.a1
pyrus_communis	pycom04g08670 pycom12g11100
rosa_chinensis	RchiOBHm_Chr3g0470391
rosa_laevigata	RLG00000024271
rosa_multiflora	Rmu_co8411419.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410860
rosa_rugosa	Rorug03G0108300 Rorug03G0108400
rosa_samantha	Rh3AG158600 Rh3AG158700 Rh3BG183300 Rh3CG173800 Rh3DG191600
rosa_wichuraiana	Rw3G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	410
AclWI	GGATC	2 cut(s)	92, 426
AcsI	RAATTY	5 cut(s)	38, 318, 610, 652, 680
AcuI	CTGAAG	2 cut(s)	102, 540
AfaI	GTAC	3 cut(s)	132, 283, 345
AfiI	CCNNNNNNNGG	2 cut(s)	410, 495
AgsI	TTSAA	4 cut(s)	63, 292, 599, 713
AjnI	CCWGG	1 cut(s)	699
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	2 cut(s)	86, 554
AluI	AGCT	2 cut(s)	86, 554
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	92, 426
AoxI	GGCC	1 cut(s)	486
ApoI	RAATTY	5 cut(s)	38, 318, 610, 652, 680
AspS9I	GGNCC	3 cut(s)	462, 471, 499
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	31, 209, 685
AvaII	GGWCC	3 cut(s)	462, 471, 499
AxyI	CCTNAGG	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	450
BccI	CCATC	4 cut(s)	113, 386, 425, 500
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	1 cut(s)	701
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	3 cut(s)	347, 441, 585
BglII	AGATCT	1 cut(s)	592
Bme1390I	CCNGG	2 cut(s)	503, 701
Bme18I	GGWCC	3 cut(s)	462, 471, 499
BmgT120I	GGNCC	3 cut(s)	462, 471, 499
BmiI	GGNNCC	3 cut(s)	463, 464, 500
BmrFI	CCNGG	2 cut(s)	503, 701
BmsI	GCATC	2 cut(s)	619, 694
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 495
Bse1I	ACTGG	4 cut(s)	101, 311, 635, 647
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	6 cut(s)	12, 44, 170, 346, 511, 709
BseLI	CCNNNNNNNGG	2 cut(s)	410, 495
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	189, 489
BseNI	ACTGG	4 cut(s)	101, 311, 635, 647
BseSI	GKGCMC	1 cut(s)	450
BshFI	GGCC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	2 cut(s)	475, 512
BslI	CCNNNNNNNGG	2 cut(s)	410, 495
BsmAI	GTCTC	1 cut(s)	690
BsmFI	GGGAC	2 cut(s)	475, 512
BsnI	GGCC	1 cut(s)	488
Bso31I	GGTCTC	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	97, 418, 574, 592
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	2 cut(s)	188, 488
BspLI	GGNNCC	3 cut(s)	463, 464, 500
BspPI	GGATC	2 cut(s)	92, 426
BspTNI	GGTCTC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	4 cut(s)	101, 311, 635, 647
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	4 cut(s)	97, 418, 574, 592
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	175, 273, 475
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	6 cut(s)	12, 44, 170, 346, 511, 709
BstKTI	GATC	4 cut(s)	100, 421, 577, 595
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	4 cut(s)	97, 418, 574, 592
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	501, 699
BstSLI	GKGCMC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	418, 592
BstYI	RGATCY	2 cut(s)	418, 592
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	6 cut(s)	12, 44, 170, 346, 511, 709
BtsIMutI	CAGTG	1 cut(s)	654
Cfr13I	GGNCC	3 cut(s)	462, 471, 499
Csp6I	GTAC	3 cut(s)	131, 282, 344
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	5 cut(s)	86, 287, 488, 527, 554
CviKI_1	RGCY	5 cut(s)	86, 287, 488, 527, 554
CviQI	GTAC	3 cut(s)	131, 282, 344
DdeI	CTNAG	3 cut(s)	175, 273, 475
DpnI	GATC	4 cut(s)	99, 420, 576, 594
DpnII	GATC	4 cut(s)	97, 418, 574, 592
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	3 cut(s)	462, 471, 499
Eco57I	CTGAAG	2 cut(s)	102, 540
Eco81I	CCTNAGG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	2 cut(s)	38, 610
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	1 cut(s)	197
FaiI	YATR	8 cut(s)	195, 215, 306, 452, 495, 524, 563, 686
FaqI	GGGAC	2 cut(s)	475, 512
FatI	CATG	1 cut(s)	193
FokI	GGATG	5 cut(s)	19, 31, 157, 353, 518
FspBI	CTAG	3 cut(s)	347, 441, 585
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	1 cut(s)	197
HincII	GTYRAC	2 cut(s)	517, 546
HindII	GTYRAC	2 cut(s)	517, 546
HindIII	AAGCTT	2 cut(s)	84, 552
HinfI	GANTC	5 cut(s)	140, 152, 256, 392, 455
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	3 cut(s)	31, 209, 685
Hpy166II	GTNNAC	3 cut(s)	200, 517, 546
Hpy188III	TCNNGA	2 cut(s)	14, 596
Hpy8I	GTNNAC	3 cut(s)	200, 517, 546
HpyAV	CCTTC	4 cut(s)	182, 212, 298, 505
HpyCH4V	TGCA	6 cut(s)	163, 324, 539, 632, 688, 707
HpyF3I	CTNAG	3 cut(s)	175, 273, 475
Hsp92II	CATG	1 cut(s)	197
KflI	GGGWCCC	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	97, 418, 574, 592
LweI	GCATC	2 cut(s)	619, 694
MaeI	CTAG	3 cut(s)	347, 441, 585
MaeIII	GTNAC	2 cut(s)	91, 673
MalI	GATC	4 cut(s)	99, 420, 576, 594
MboI	GATC	4 cut(s)	97, 418, 574, 592
MboII	GAAGA	3 cut(s)	362, 578, 584
MflI	RGATCY	2 cut(s)	418, 592
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	7 cut(s)	38, 181, 318, 328, 610, 652, 680
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	10, 28, 184, 484, 562, 658
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	503, 701
MvaI	CCWGG	1 cut(s)	701
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	4 cut(s)	97, 418, 574, 592
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	3 cut(s)	463, 464, 500
NmuCI	GTSAC	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	140, 152, 392, 455
PflMI	CCANNNNNTGG	1 cut(s)	410
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PpuMI	RGGWCCY	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	3 cut(s)	463, 464, 500
PspPI	GGNCC	3 cut(s)	462, 471, 499
PspPPI	RGGWCCY	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	418, 592
RsaI	GTAC	3 cut(s)	132, 283, 345
RsaNI	GTAC	3 cut(s)	131, 282, 344
RseI	CAYNNNNRTG	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	97, 418, 574, 592
Sau96I	GGNCC	3 cut(s)	462, 471, 499
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	503, 701
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	619, 694
SinI	GGWCC	3 cut(s)	462, 471, 499
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	7 cut(s)	38, 181, 318, 328, 610, 652, 680
SseBI	AGGCCT	1 cut(s)	488
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	347, 441, 585
StuI	AGGCCT	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	501, 699
StyI	CCWWGG	1 cut(s)	660
TasI	AATT	7 cut(s)	38, 181, 318, 328, 610, 652, 680
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	4 cut(s)	140, 152, 392, 455
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	321, 546
TspRI	CASTG	1 cut(s)	654
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	462, 471, 499
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	5 cut(s)	38, 318, 610, 652, 680
XcmI	CCANNNNNNNNNTGG	2 cut(s)	334, 411
XspI	CTAG	3 cut(s)	347, 441, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.