Rh3DG191500

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017132
Physical Location & Seq
Reverse (-)
17032544 .. 17034377
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG191500.1

Sequence Viewer

Length: 777 bp
ATGGCCATGGTCACTGCCTCTGCTCATTGTTCTCTCAAGCTTTCCTCTCCTTTGCTACGCACCTCTGCGTTTCCCACTATCCCAACAGCTTCCTCCAAATGCTTCTTCCCTTCGTCGTTGACGCCTGATTTATCTGCCACTAGAAGAAGAGCTCTCTTCTCTCCAGTGATAAAAAGCAAAATTAGCCAAGATGTTGATTGTGTCGAGGAGGCTGAGCGGCTACAAATACAAGTGGGGAAGCCCAGTGAGACTTTCTTGTACTCCAATCTTCTGCCTCTGCTGTTTGTGGCTGCTCTCCCTGGAGCTGGTGCTGTGACATCTCTATTTGAGCCTTTCGTCGAGCTTGTCAAATCATTCAATCTTCCTGGATGGCTAGTGCATTGGGGTCACCCAGGCAACATGGCTGTTGTGCTCTTTGCAATGGGTGGCTATGGATCTTATCTTGGATACCGGATACGGTATTCTGATGATGTGGACGAGAAGGCCAAGGCCAAAGATTTGCACCCCAAGCTCCTAGCTGGGATGTTTTTCTTCTTTGCCGCCGGAGCTACTGGTGGAGTAACAGCTCTTCTCACTTCTGACAAACCCATTTTTGAGAGCTCTCATGCTGTCACTGGATTTATTGGCCTTGGTCTCTTGACCATTCAGACAATTTTACCTTCTTTGTTTGAGGGTAATCCAAACTTAAGAAGTGTTCATGGGGTCTTGGGTACTGGGATAATGACATTGTTTGTTGTCCATGCTGCTCTTGGACTTCAACTTGGTCTAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

258

Amino Acids

27.58

Weight (kDa)

8.43

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 126 - 257 6.7e-27 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 217
AciI CCGC 2 cut(s) 217, 540
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 260, 712
AfiI CCNNNNNNNGG 1 cut(s) 305
AflII CTTAAG 1 cut(s) 685
AgsI TTSAA 2 cut(s) 358, 758
AjnI CCWGG 3 cut(s) 298, 364, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
Alw21I GWGCWC 3 cut(s) 154, 414, 602
Alw26I GTCTC 2 cut(s) 242, 638
AlwI GGATC 1 cut(s) 442
AoxI GGCC 4 cut(s) 3, 483, 489, 625
ApeKI GCWGC 2 cut(s) 290, 743
AsuHPI GGTGA 1 cut(s) 380
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 154, 602
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
Bbv12I GWGCWC 3 cut(s) 154, 414, 602
BbvI GCAGC 2 cut(s) 277, 730
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 3 cut(s) 300, 366, 393
BciVI GTATCC 2 cut(s) 440, 447
BcoDI GTCTC 2 cut(s) 242, 638
BfaI CTAG 3 cut(s) 141, 374, 515
BfrI CTTAAG 1 cut(s) 685
BfuI GTATCC 2 cut(s) 440, 447
BisI GCNGC 4 cut(s) 218, 291, 540, 744
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 4 cut(s) 219, 292, 541, 745
Bme1390I CCNGG 3 cut(s) 300, 366, 393
BmrFI CCNGG 3 cut(s) 300, 366, 393
BmrI ACTGGG 2 cut(s) 237, 723
BmuI ACTGGG 2 cut(s) 237, 723
BpmI CTGGAG 2 cut(s) 147, 321
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 638
BsaJI CCNNGG 5 cut(s) 6, 298, 391, 486, 628
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 5 cut(s) 164, 243, 556, 619, 718
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 3 cut(s) 300, 366, 393
BseDI CCNNGG 5 cut(s) 6, 298, 391, 486, 628
BseGI GGATG 2 cut(s) 374, 528
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 5 cut(s) 164, 243, 556, 619, 718
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 277, 730
BseYI CCCAGC 1 cut(s) 518
BshFI GGCC 4 cut(s) 5, 485, 491, 627
BsiHKAI GWGCWC 3 cut(s) 154, 414, 602
BsiSI CCGG 2 cut(s) 451, 543
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 242, 638
BsnI GGCC 4 cut(s) 5, 485, 491, 627
Bso31I GGTCTC 1 cut(s) 638
Bsp1286I GDGCHC 3 cut(s) 154, 414, 602
Bsp143I GATC 1 cut(s) 434
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 217, 540
BspANI GGCC 4 cut(s) 5, 485, 491, 627
BspCNI CTCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 442
BspQI GCTCTTC 2 cut(s) 142, 573
BspTI CTTAAG 1 cut(s) 685
BspTNI GGTCTC 1 cut(s) 638
BsrBI CCGCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 5 cut(s) 164, 243, 556, 619, 718
BssECI CCNNGG 5 cut(s) 6, 298, 391, 486, 628
BssMI GATC 1 cut(s) 434
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 3 cut(s) 6, 486, 628
Bst2UI CCWGG 3 cut(s) 300, 366, 393
Bst4CI ACNGT 1 cut(s) 459
Bst6I CTCTTC 3 cut(s) 142, 161, 573
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 685
BstDEI CTNAG 2 cut(s) 213, 767
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 2 cut(s) 374, 528
BstKTI GATC 1 cut(s) 437
BstMAI GTCTC 2 cut(s) 242, 638
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 3 cut(s) 183, 508, 545
BstNI CCWGG 3 cut(s) 300, 366, 393
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 298, 364, 391
BstV1I GCAGC 2 cut(s) 277, 730
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuI GTATCC 2 cut(s) 440, 447
BsuRI GGCC 4 cut(s) 5, 485, 491, 627
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 374, 528
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 171, 250, 612
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 259, 711
CviAII CATG 5 cut(s) 7, 400, 605, 698, 740
CviQI GTAC 2 cut(s) 259, 711
DdeI CTNAG 2 cut(s) 213, 767
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 142, 161, 573
EarI CTCTTC 3 cut(s) 142, 161, 573
Ecl136II GAGCTC 2 cut(s) 152, 600
Eco130I CCWWGG 3 cut(s) 6, 486, 628
Eco24I GRGCYC 2 cut(s) 154, 602
Eco31I GGTCTC 1 cut(s) 638
Eco53kI GAGCTC 2 cut(s) 152, 600
Eco91I GGTNACC 1 cut(s) 386
EcoICRI GAGCTC 2 cut(s) 152, 600
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 3 cut(s) 298, 364, 391
EcoT14I CCWWGG 3 cut(s) 6, 486, 628
EcoT38I GRGCYC 2 cut(s) 154, 602
ErhI CCWWGG 3 cut(s) 6, 486, 628
FaeI CATG 5 cut(s) 10, 403, 608, 701, 743
FaiI YATR 6 cut(s) 8, 401, 432, 606, 699, 741
FatI CATG 5 cut(s) 6, 399, 604, 697, 739
Fnu4HI GCNGC 4 cut(s) 218, 291, 540, 744
FokI GGATG 2 cut(s) 381, 535
FriOI GRGCYC 2 cut(s) 154, 602
Fsp4HI GCNGC 4 cut(s) 218, 291, 540, 744
FspBI CTAG 3 cut(s) 141, 374, 515
GluI GCNGC 4 cut(s) 218, 291, 540, 744
GsaI CCCAGC 1 cut(s) 522
GsuI CTGGAG 2 cut(s) 147, 321
HaeIII GGCC 4 cut(s) 5, 485, 491, 627
HapII CCGG 2 cut(s) 451, 543
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 5 cut(s) 10, 403, 608, 701, 743
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 2 cut(s) 38, 769
HpaII CCGG 2 cut(s) 451, 543
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 2 cut(s) 120, 475
Hpy188I TCNGA 3 cut(s) 466, 580, 648
Hpy188III TCNNGA 1 cut(s) 637
Hpy8I GTNNAC 2 cut(s) 120, 475
Hpy99I CGWCG 2 cut(s) 118, 341
HpyAV CCTTC 3 cut(s) 120, 475, 669
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 379, 419, 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 508, 545
HpyF3I CTNAG 2 cut(s) 213, 767
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 5 cut(s) 10, 403, 608, 701, 743
Kzo9I GATC 1 cut(s) 434
LguI GCTCTTC 2 cut(s) 142, 573
LmnI GCTCC 3 cut(s) 302, 516, 545
Lsp1109I GCAGC 2 cut(s) 277, 730
MaeI CTAG 3 cut(s) 141, 374, 515
MaeIII GTNAC 5 cut(s) 10, 313, 386, 559, 610
MalI GATC 1 cut(s) 436
MbiI CCGCTC 1 cut(s) 217
MboI GATC 1 cut(s) 434
MboII GAAGA 8 cut(s) 97, 148, 156, 159, 260, 353, 523, 560
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 3 cut(s) 154, 414, 602
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 180, 651
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 28, 55, 73, 103, 199, 202, 285, 664
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 685
MspI CCGG 2 cut(s) 451, 543
MspR9I CCNGG 3 cut(s) 300, 366, 393
MvaI CCWGG 3 cut(s) 300, 366, 393
MwoI GCNNNNNNNGC 3 cut(s) 183, 508, 545
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 434
NlaIII CATG 5 cut(s) 10, 403, 608, 701, 743
NmuCI GTSAC 4 cut(s) 10, 313, 386, 610
PciSI GCTCTTC 2 cut(s) 142, 573
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 4 cut(s) 219, 292, 541, 745
Psp124BI GAGCTC 2 cut(s) 154, 602
Psp6I CCWGG 3 cut(s) 298, 364, 391
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 3 cut(s) 298, 364, 391
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 2 cut(s) 260, 712
RsaNI GTAC 2 cut(s) 259, 711
SacI GAGCTC 2 cut(s) 154, 602
SapI GCTCTTC 2 cut(s) 142, 573
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 4 cut(s) 218, 291, 540, 744
Sau3AI GATC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 300, 366, 393
SduI GDGCHC 3 cut(s) 154, 414, 602
SmlI CTYRAG 2 cut(s) 35, 685
SmoI CTYRAG 2 cut(s) 35, 685
Sse9I AATT 2 cut(s) 180, 651
SsiI CCGC 2 cut(s) 217, 540
SspMI CTAG 3 cut(s) 141, 374, 515
SstI GAGCTC 2 cut(s) 154, 602
StyD4I CCNGG 3 cut(s) 298, 364, 391
StyI CCWWGG 3 cut(s) 6, 486, 628
TaaI ACNGT 1 cut(s) 459
TaqI TCGA 2 cut(s) 204, 339
TasI AATT 2 cut(s) 180, 651
TatI WGTACW 1 cut(s) 258
TauI GCSGC 2 cut(s) 220, 542
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 4 cut(s) 19, 171, 250, 619
TseFI GTSAC 4 cut(s) 10, 313, 386, 610
TseI GCWGC 2 cut(s) 290, 743
Tsp45I GTSAC 4 cut(s) 10, 313, 386, 610
TspDTI ATGAA 1 cut(s) 686
TspRI CASTG 4 cut(s) 19, 171, 250, 619
Vha464I CTTAAG 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XspI CTAG 3 cut(s) 141, 374, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.