Rmu_sc0002383.1_g000015

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002383.1
OG0017132
Physical Location & Seq
Reverse (-)
48421 .. 51838
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002383.1_g000015.1.cds

Sequence Viewer

Length: 1089 bp
atggtcactgcctctgctcattgttctctcaagctttcctctcctttgctacgcacctctgcgtttcccactatcccaacagcttcctccaaatgcttcttcccttcgtcgttgacgcttgatttatctgccactagaagaagagctctcttctctccttcagtgataaaaagcaaaattagccaagatgttgattgtgttgaggaggctgagcggctacaaatacaagtggggaagcccagtgagactttcttgtactccaatcttctgcctctgctgtttttggctgctctccctggagctggtgctgtgacatctctatttgagcctttcgtcgagcttgtcaaatcattcaatcttcctggatggctagtgcattggggtcacccaggcaacatggctgttgtgctctttgcaatgggtggctatggatcttatcttggataccggatacggtattctgatgatgtggaggagaaggccaaggccaaagatttgcaccccaagctcctagctgggatgtttttcttctttgccgccggagcaactggtggagtaacagctcttctcacttctgacaaacccatttttgagagctctcatgctgtcactggatttattggccttggtctcttgaccattcagacaattttaccttctttgtttgagggtaatccaaacttaagaagtgctcatggggtcttgggtactgggataatgacattgtttgttgtccatgctgctcttggacttcaacttgctttaaaagttggcccctatggaggcaccggtggcgacacttgggatgacggagtttactcgacggtgagggtggtggacatagttcacgattcagcctccgtttttgggatccagactaaatataagagtgccggggatgagtcaatttggtcaaaatttcatggtccaaagagagcagattacaataaatctataagcagtgttagtccacctccacccctaaacctccttgtttggttccaaaaccagctggtgtgcaaacagtctctttttgggcgagtggttgcgcaggcgtgccagcactgcggggtgcagtcgttggggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

362

Amino Acids

38.81

Weight (kDa)

8.66

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1050
AccB1I GGYRCC 1 cut(s) 785
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 3 cut(s) 214, 537, 1068
AclWI GGATC 3 cut(s) 439, 865, 878
AcsI RAATTY 1 cut(s) 917
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 257, 709
AfiI CCNNNNNNNGG 3 cut(s) 302, 782, 867
AflII CTTAAG 1 cut(s) 682
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 2 cut(s) 355, 755
AjnI CCWGG 3 cut(s) 295, 361, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
Alw21I GWGCWC 4 cut(s) 148, 411, 599, 694
Alw26I GTCTC 3 cut(s) 239, 635, 1032
AlwI GGATC 3 cut(s) 439, 865, 878
AoxI GGCC 4 cut(s) 480, 486, 622, 772
ApeKI GCWGC 2 cut(s) 287, 740
ApoI RAATTY 1 cut(s) 917
AsiGI ACCGGT 1 cut(s) 788
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 2 cut(s) 773, 926
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 2 cut(s) 377, 838
AvaII GGWCC 1 cut(s) 926
BamHI GGATCC 1 cut(s) 870
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 2 cut(s) 148, 599
BarI GAAGNNNNNNTAC 2 cut(s) 549, 581
Bbv12I GWGCWC 4 cut(s) 148, 411, 599, 694
BbvI GCAGC 2 cut(s) 274, 727
BccI CCATC 1 cut(s) 360
BciT130I CCWGG 3 cut(s) 297, 363, 390
BciVI GTATCC 2 cut(s) 437, 444
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 3 cut(s) 239, 635, 1032
BfaI CTAG 3 cut(s) 135, 371, 512
BfrI CTTAAG 1 cut(s) 682
BfuI GTATCC 2 cut(s) 437, 444
BisI GCNGC 4 cut(s) 215, 288, 537, 741
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 4 cut(s) 216, 289, 538, 742
Bme1390I CCNGG 4 cut(s) 297, 363, 390, 895
Bme18I GGWCC 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 773, 926
BmiI GGNNCC 4 cut(s) 775, 787, 872, 1001
BmrFI CCNGG 4 cut(s) 297, 363, 390, 895
BmrI ACTGGG 2 cut(s) 234, 720
BmuI ACTGGG 2 cut(s) 234, 720
BpmI CTGGAG 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 895
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 5 cut(s) 295, 388, 483, 625, 894
BsaWI WCCGGW 2 cut(s) 447, 788
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 782, 867
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 4 cut(s) 240, 553, 616, 715
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 3 cut(s) 297, 363, 390
BseDI CCNNGG 5 cut(s) 295, 388, 483, 625, 894
BseGI GGATG 4 cut(s) 371, 525, 811, 904
BseLI CCNNNNNNNGG 3 cut(s) 302, 782, 867
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 4 cut(s) 240, 553, 616, 715
BseRI GAGGAG 2 cut(s) 218, 488
BseXI GCAGC 2 cut(s) 274, 727
BseYI CCCAGC 1 cut(s) 515
BshFI GGCC 4 cut(s) 482, 488, 624, 774
BshNI GGYRCC 1 cut(s) 785
BshTI ACCGGT 1 cut(s) 788
BsiHKAI GWGCWC 4 cut(s) 148, 411, 599, 694
BsiSI CCGG 4 cut(s) 448, 540, 789, 894
BslI CCNNNNNNNGG 3 cut(s) 302, 782, 867
BsmAI GTCTC 3 cut(s) 239, 635, 1032
BsnI GGCC 4 cut(s) 482, 488, 624, 774
Bso31I GGTCTC 1 cut(s) 635
Bsp1286I GDGCHC 4 cut(s) 148, 411, 599, 694
Bsp143I GATC 2 cut(s) 431, 870
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 214, 537, 1068
BspANI GGCC 4 cut(s) 482, 488, 624, 774
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 4 cut(s) 775, 787, 872, 1001
BspPI GGATC 3 cut(s) 439, 865, 878
BspQI GCTCTTC 2 cut(s) 136, 570
BspT107I GGYRCC 1 cut(s) 785
BspTI CTTAAG 1 cut(s) 682
BspTNI GGTCTC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 4 cut(s) 240, 553, 616, 715
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 5 cut(s) 295, 388, 483, 625, 894
BssMI GATC 2 cut(s) 431, 870
BssT1I CCWWGG 2 cut(s) 483, 625
Bst2UI CCWGG 3 cut(s) 297, 363, 390
Bst4CI ACNGT 3 cut(s) 456, 826, 1026
Bst6I CTCTTC 3 cut(s) 136, 155, 570
BstAFI CTTAAG 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 1053, 1057, 1061
BstDEI CTNAG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 383
BstF5I GGATG 4 cut(s) 371, 525, 811, 904
BstHHI GCGC 1 cut(s) 1051
BstKTI GATC 2 cut(s) 434, 873
BstMAI GTCTC 3 cut(s) 239, 635, 1032
BstMBI GATC 2 cut(s) 431, 870
BstMWI GCNNNNNNNGC 5 cut(s) 180, 505, 542, 792, 1065
BstNI CCWGG 3 cut(s) 297, 363, 390
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 4 cut(s) 295, 361, 388, 893
BstV1I GCAGC 2 cut(s) 274, 727
BstX2I RGATCY 2 cut(s) 431, 870
BstYI RGATCY 2 cut(s) 431, 870
BsuI GTATCC 2 cut(s) 437, 444
BsuRI GGCC 4 cut(s) 482, 488, 624, 774
BtsCI GGATG 4 cut(s) 371, 525, 811, 904
BtsI GCAGTG 3 cut(s) 6, 967, 1063
BtsIMutI CAGTG 6 cut(s) 6, 168, 247, 609, 967, 1063
Cac8I GCNNGC 3 cut(s) 1053, 1057, 1061
CfoI GCGC 1 cut(s) 1051
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 2 cut(s) 773, 926
CseI GACGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 256, 708
CspAI ACCGGT 1 cut(s) 788
CviAII CATG 5 cut(s) 397, 602, 695, 737, 923
CviQI GTAC 2 cut(s) 256, 708
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 433, 872
DpnII GATC 2 cut(s) 431, 870
DraI TTTAAA 1 cut(s) 765
Eam1104I CTCTTC 3 cut(s) 136, 155, 570
EarI CTCTTC 3 cut(s) 136, 155, 570
Ecl136II GAGCTC 2 cut(s) 146, 597
Eco130I CCWWGG 2 cut(s) 483, 625
Eco24I GRGCYC 2 cut(s) 148, 599
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 926
Eco53kI GAGCTC 2 cut(s) 146, 597
Eco57I CTGAAG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 383
EcoICRI GAGCTC 2 cut(s) 146, 597
EcoO65I GGTNACC 1 cut(s) 383
EcoRII CCWGG 3 cut(s) 295, 361, 388
EcoT14I CCWWGG 2 cut(s) 483, 625
EcoT38I GRGCYC 2 cut(s) 148, 599
ErhI CCWWGG 2 cut(s) 483, 625
FaeI CATG 5 cut(s) 400, 605, 698, 740, 926
FatI CATG 5 cut(s) 396, 601, 694, 736, 922
FauI CCCGC 1 cut(s) 1061
Fnu4HI GCNGC 4 cut(s) 215, 288, 537, 741
FokI GGATG 4 cut(s) 378, 532, 818, 911
FriOI GRGCYC 2 cut(s) 148, 599
Fsp4HI GCNGC 4 cut(s) 215, 288, 537, 741
FspBI CTAG 3 cut(s) 135, 371, 512
FspI TGCGCA 1 cut(s) 1050
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 4 cut(s) 215, 288, 537, 741
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 4 cut(s) 482, 488, 624, 774
HapII CCGG 4 cut(s) 448, 540, 789, 894
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 1051
Hin1II CATG 5 cut(s) 400, 605, 698, 740, 926
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 2 cut(s) 851, 902
HpaII CCGG 4 cut(s) 448, 540, 789, 894
HphI GGTGA 2 cut(s) 377, 838
Hpy166II GTNNAC 5 cut(s) 114, 817, 838, 847, 971
Hpy188I TCNGA 3 cut(s) 463, 577, 645
Hpy188III TCNNGA 3 cut(s) 634, 848, 874
Hpy8I GTNNAC 5 cut(s) 114, 817, 838, 847, 971
Hpy99I CGWCG 3 cut(s) 112, 338, 826
HpyAV CCTTC 4 cut(s) 114, 168, 472, 666
HpyCH4III ACNGT 3 cut(s) 456, 826, 1026
HpyCH4V TGCA 5 cut(s) 376, 416, 499, 1020, 1075
HpyF10VI GCNNNNNNNGC 5 cut(s) 180, 505, 542, 792, 1065
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 5 cut(s) 400, 605, 698, 740, 926
HspAI GCGC 1 cut(s) 1049
Kzo9I GATC 2 cut(s) 431, 870
LguI GCTCTTC 2 cut(s) 136, 570
LmnI GCTCC 3 cut(s) 299, 513, 542
Lsp1109I GCAGC 2 cut(s) 274, 727
MaeI CTAG 3 cut(s) 135, 371, 512
MaeIII GTNAC 5 cut(s) 4, 310, 383, 556, 607
MalI GATC 2 cut(s) 433, 872
MbiI CCGCTC 1 cut(s) 214
MboI GATC 2 cut(s) 431, 870
MboII GAAGA 8 cut(s) 91, 142, 150, 153, 257, 350, 520, 557
MflI RGATCY 2 cut(s) 431, 870
MhlI GDGCHC 4 cut(s) 148, 411, 599, 694
MluCI AATT 4 cut(s) 177, 648, 906, 917
MlyI GAGTC 1 cut(s) 911
MseI TTAA 2 cut(s) 683, 764
MspA1I CMGCKG 1 cut(s) 1012
MspCI CTTAAG 1 cut(s) 682
MspI CCGG 4 cut(s) 448, 540, 789, 894
MspR9I CCNGG 4 cut(s) 297, 363, 390, 895
MvaI CCWGG 3 cut(s) 297, 363, 390
MwoI GCNNNNNNNGC 5 cut(s) 180, 505, 542, 792, 1065
NciI CCSGG 1 cut(s) 895
NdeII GATC 2 cut(s) 431, 870
NlaIII CATG 5 cut(s) 400, 605, 698, 740, 926
NlaIV GGNNCC 4 cut(s) 775, 787, 872, 1001
NmuCI GTSAC 4 cut(s) 4, 310, 383, 607
NsbI TGCGCA 1 cut(s) 1050
PciSI GCTCTTC 2 cut(s) 136, 570
PfeI GAWTC 1 cut(s) 851
PfoI TCCNGGA 1 cut(s) 361
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 4 cut(s) 216, 289, 538, 742
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
Psp124BI GAGCTC 2 cut(s) 148, 599
Psp6I CCWGG 3 cut(s) 295, 361, 388
PspEI GGTNACC 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 3 cut(s) 295, 361, 388
PspN4I GGNNCC 4 cut(s) 775, 787, 872, 1001
PspPI GGNCC 2 cut(s) 773, 926
PsuI RGATCY 2 cut(s) 431, 870
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 2 cut(s) 257, 709
RsaNI GTAC 2 cut(s) 256, 708
SacI GAGCTC 2 cut(s) 148, 599
SapI GCTCTTC 2 cut(s) 136, 570
SaqAI TTAA 2 cut(s) 683, 764
SatI GCNGC 4 cut(s) 215, 288, 537, 741
Sau3AI GATC 2 cut(s) 431, 870
Sau96I GGNCC 2 cut(s) 773, 926
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 4 cut(s) 297, 363, 390, 895
SduI GDGCHC 4 cut(s) 148, 411, 599, 694
SgrAI CRCCGGYG 1 cut(s) 788
SinI GGWCC 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 29, 682
SmoI CTYRAG 2 cut(s) 29, 682
Sse9I AATT 4 cut(s) 177, 648, 906, 917
SsiI CCGC 3 cut(s) 214, 537, 1068
SspMI CTAG 3 cut(s) 135, 371, 512
SstI GAGCTC 2 cut(s) 148, 599
StyD4I CCNGG 4 cut(s) 295, 361, 388, 893
StyI CCWWGG 2 cut(s) 483, 625
TaaI ACNGT 3 cut(s) 456, 826, 1026
TaqI TCGA 2 cut(s) 336, 821
TasI AATT 4 cut(s) 177, 648, 906, 917
TatI WGTACW 1 cut(s) 255
TauI GCSGC 2 cut(s) 217, 539
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 2 cut(s) 683, 764
Tru9I TTAA 2 cut(s) 683, 764
TscAI CASTG 6 cut(s) 13, 168, 247, 616, 967, 1070
TseFI GTSAC 4 cut(s) 4, 310, 383, 607
TseI GCWGC 2 cut(s) 287, 740
Tsp45I GTSAC 4 cut(s) 4, 310, 383, 607
TspDTI ATGAA 1 cut(s) 911
TspGWI ACGGA 2 cut(s) 825, 850
TspRI CASTG 6 cut(s) 13, 168, 247, 616, 967, 1070
Vha464I CTTAAG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 926
XapI RAATTY 1 cut(s) 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XspI CTAG 3 cut(s) 135, 371, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.