Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Reverse (-)

15634466 .. 15636522

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTGCTTCAGCTTCGTCTCTCGCTCTCTCTTCCTTCAACCCTAAATCTCTTCCTTTCGGCGTCTCCAGACCTGCCTCCGTTTCCCTCTTATCTCCTTCCCTCTCCTTTAAACTCAATTCCGACTCCGTTTCCTTCTCCATCGCCGCCAAATGGAACTCTCCCGCTTCTCGCTTCGCCCGTAACGTTGCGATTACCTCAGAGTTCGAGGTGGAAGAAGATGGTTTCGCTGACGTCGCTCCGCCAAAAGAGCAATCTTTCTCTGCTGACCTTAAACTCTTCGTTGGTAACCTTCCTTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATGTTGAGATGGTTGAGGTAATCTATGACAAAATTACAGGAAGAAGCAGAGGTTTTGGATTCGTGACTATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTCAGCAGTTCAATGGCTATGAGTTGGATGGTAGACCTTTGAGAGTCAATGCTGGTCCCCCACCACCAAAGAGGGAAGATGGTTTCTCCAGAGGACCTAGGAGCAGCTTTGGAAGCTCAGGTTCTGGATATGGAGGAGGTGGTGGTTCTGGTGCTGGTTCAGGAAACCGTGTTTATGTGGGTAACCTCTCTTGGGGAGTTGATGACATGGCTCTTGAGAGTTTGTTCTCGGAGCAAGGAAAGGTTGTTGAGGCCAGAGTCATCTACGACAGGGACAGTGGTCGATCCAAGGGTTTTGGATTTGTGACATACGACTCTTCTCAAGAGGTCCAAAATGCCATCAAGTCCTTGGATGGTGCTGATTTGGACGGTAGACAAATTAGAGTCTCGGAAGCTGAGGCTAGGCCTCCAAGGCGCCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

289

Amino Acids

30.72

Weight (kDa)

5.06

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	93 - 163	8.5e-20	RNA recognition motif
RRM_1	PF00076	206 - 276	1.3e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	858
AccI	GTMKAC	2 cut(s)	478, 817
AciI	CCGC	3 cut(s)	147, 165, 242
AclI	AACGTT	2 cut(s)	186, 303
AclWI	GGATC	1 cut(s)	723
AcuI	CTGAAG	2 cut(s)	405, 450
AcyI	GRCGYC	3 cut(s)	63, 234, 859
AfiI	CCNNNNNNNGG	2 cut(s)	153, 637
AgsI	TTSAA	3 cut(s)	40, 301, 457
AluBI	AGCT	7 cut(s)	14, 319, 328, 443, 552, 561, 839
AluI	AGCT	7 cut(s)	14, 319, 328, 443, 552, 561, 839
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	3 cut(s)	24, 70, 835
AlwI	GGATC	1 cut(s)	723
AlwNI	CAGNNNCTG	2 cut(s)	428, 569
AoxI	GGCC	2 cut(s)	696, 848
ApeKI	GCWGC	4 cut(s)	5, 440, 443, 549
AspA2I	CCTAGG	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	3 cut(s)	500, 539, 772
AvaII	GGWCC	3 cut(s)	500, 539, 772
AvrII	CCTAGG	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	3 cut(s)	430, 452, 561
BccI	CCATC	7 cut(s)	149, 215, 349, 467, 518, 791, 791
BcoDI	GTCTC	3 cut(s)	24, 70, 835
BfaI	CTAG	2 cut(s)	543, 846
BfoI	RGCGCY	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	82
BglI	GCCNNNNNGGC	1 cut(s)	856
BisI	GCNGC	5 cut(s)	6, 147, 441, 444, 550
BlnI	CCTAGG	1 cut(s)	542
BlpI	GCTNAGC	3 cut(s)	315, 324, 447
BlsI	GCNGC	5 cut(s)	7, 148, 442, 445, 551
Bme18I	GGWCC	3 cut(s)	500, 539, 772
BmgT120I	GGNCC	3 cut(s)	500, 539, 772
BmiI	GGNNCC	2 cut(s)	502, 860
BoxI	GACNNNNGTC	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	52, 517
Bpu10I	CCTNAGC	2 cut(s)	562, 840
Bpu1102I	GCTNAGC	3 cut(s)	315, 324, 447
BpuEI	CTTGAG	2 cut(s)	680, 750
BsaHI	GRCGYC	3 cut(s)	63, 234, 859
BsaJI	CCNNGG	4 cut(s)	542, 732, 792, 854
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 637
BseDI	CCNNGG	4 cut(s)	542, 732, 792, 854
BseGI	GGATG	2 cut(s)	478, 802
BseLI	CCNNNNNNNGG	2 cut(s)	153, 637
BseMII	CTCAG	6 cut(s)	213, 329, 338, 461, 576, 831
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	3 cut(s)	430, 452, 561
BshFI	GGCC	2 cut(s)	698, 850
BshNI	GGYRCC	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	2 cut(s)	486, 731
BslI	CCNNNNNNNGG	2 cut(s)	153, 637
BsmAI	GTCTC	3 cut(s)	24, 70, 835
BsmBI	CGTCTC	2 cut(s)	24, 70
BsmFI	GGGAC	2 cut(s)	486, 731
BsnI	GGCC	2 cut(s)	698, 850
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	728
Bsp1720I	GCTNAGC	3 cut(s)	315, 324, 447
BspACI	CCGC	3 cut(s)	147, 165, 242
BspANI	GGCC	2 cut(s)	698, 850
BspCNI	CTCAG	6 cut(s)	212, 328, 337, 460, 575, 832
BspLI	GGNNCC	2 cut(s)	502, 860
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	858
BssECI	CCNNGG	4 cut(s)	542, 732, 792, 854
BssMI	GATC	1 cut(s)	728
BssNI	GRCGYC	3 cut(s)	63, 234, 859
BssT1I	CCWWGG	4 cut(s)	542, 732, 792, 854
Bst4CI	ACNGT	4 cut(s)	311, 614, 722, 815
Bst6I	CTCTTC	4 cut(s)	37, 57, 284, 766
BstACI	GRCGYC	3 cut(s)	63, 234, 859
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	6 cut(s)	199, 315, 324, 447, 562, 840
BstEII	GGTNACC	2 cut(s)	287, 626
BstF5I	GGATG	2 cut(s)	478, 802
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	1 cut(s)	731
BstMAI	GTCTC	3 cut(s)	24, 70, 835
BstMBI	GATC	1 cut(s)	728
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 236, 250, 320, 325, 558, 856
BstPAI	GACNNNNGTC	1 cut(s)	723
BstPI	GGTNACC	2 cut(s)	287, 626
BstV1I	GCAGC	3 cut(s)	430, 452, 561
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	698, 850
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	478, 802
BtsIMutI	CAGTG	2 cut(s)	316, 727
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	2 cut(s)	428, 569
CfoI	GCGC	1 cut(s)	861
Cfr13I	GGNCC	3 cut(s)	500, 539, 772
CseI	GACGC	1 cut(s)	52
CviAII	CATG	1 cut(s)	652
DdeI	CTNAG	6 cut(s)	199, 315, 324, 447, 562, 840
DinI	GGCGCC	1 cut(s)	860
DpnI	GATC	1 cut(s)	730
DpnII	GATC	1 cut(s)	728
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	4 cut(s)	37, 57, 284, 766
EarI	CTCTTC	4 cut(s)	37, 57, 284, 766
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	4 cut(s)	542, 732, 792, 854
Eco147I	AGGCCT	1 cut(s)	850
Eco47I	GGWCC	3 cut(s)	500, 539, 772
Eco57I	CTGAAG	2 cut(s)	405, 450
Eco91I	GGTNACC	2 cut(s)	287, 626
EcoO109I	RGGNCCY	1 cut(s)	539
EcoO65I	GGTNACC	2 cut(s)	287, 626
EcoT14I	CCWWGG	4 cut(s)	542, 732, 792, 854
EgeI	GGCGCC	1 cut(s)	860
EheI	GGCGCC	1 cut(s)	860
ErhI	CCWWGG	4 cut(s)	542, 732, 792, 854
Esp3I	CGTCTC	2 cut(s)	24, 70
FaeI	CATG	1 cut(s)	655
FaiI	YATR	7 cut(s)	372, 416, 465, 576, 621, 653, 754
FaqI	GGGAC	2 cut(s)	486, 731
FatI	CATG	1 cut(s)	651
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	478, 817
Fnu4HI	GCNGC	5 cut(s)	6, 147, 441, 444, 550
FokI	GGATG	2 cut(s)	485, 809
Fsp4HI	GCNGC	5 cut(s)	6, 147, 441, 444, 550
FspBI	CTAG	2 cut(s)	543, 846
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	5 cut(s)	6, 147, 441, 444, 550
GsuI	CTGGAG	2 cut(s)	52, 517
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	2 cut(s)	698, 850
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	861
Hin1I	GRCGYC	3 cut(s)	63, 234, 859
Hin1II	CATG	1 cut(s)	655
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	6 cut(s)	125, 405, 489, 702, 758, 828
HpaII	CCGG	1 cut(s)	342
Hpy166II	GTNNAC	3 cut(s)	307, 479, 818
Hpy188I	TCNGA	5 cut(s)	124, 202, 430, 676, 835
Hpy188III	TCNNGA	7 cut(s)	69, 409, 534, 570, 606, 659, 767
Hpy8I	GTNNAC	3 cut(s)	307, 479, 818
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	46, 108, 145, 302
HpyCH4III	ACNGT	4 cut(s)	311, 614, 722, 815
HpyCH4IV	ACGT	3 cut(s)	186, 234, 303
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 236, 250, 320, 325, 558, 856
HpyF3I	CTNAG	6 cut(s)	199, 315, 324, 447, 562, 840
HpySE526I	ACGT	3 cut(s)	186, 234, 303
Hsp92I	GRCGYC	3 cut(s)	63, 234, 859
Hsp92II	CATG	1 cut(s)	655
HspAI	GCGC	1 cut(s)	859
KasI	GGCGCC	1 cut(s)	858
Kzo9I	GATC	1 cut(s)	728
LmnI	GCTCC	3 cut(s)	244, 546, 676
Lsp1109I	GCAGC	3 cut(s)	430, 452, 561
MaeI	CTAG	2 cut(s)	543, 846
MaeII	ACGT	3 cut(s)	186, 234, 303
MaeIII	GTNAC	5 cut(s)	182, 287, 409, 626, 748
MalI	GATC	1 cut(s)	730
MboI	GATC	1 cut(s)	728
MboII	GAAGA	9 cut(s)	24, 44, 227, 230, 271, 399, 411, 533, 753
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	118, 378, 822
Mly113I	GGCGCC	1 cut(s)	859
MlyI	GAGTC	5 cut(s)	119, 498, 711, 752, 837
MmeI	TCCRAC	2 cut(s)	147, 450
MseI	TTAA	2 cut(s)	111, 273
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	7 cut(s)	11, 236, 250, 320, 325, 558, 856
NarI	GGCGCC	1 cut(s)	859
NdeII	GATC	1 cut(s)	728
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	2 cut(s)	502, 860
NmuCI	GTSAC	2 cut(s)	409, 748
PceI	AGGCCT	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	2 cut(s)	178, 183
PfeI	GAWTC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	415
PkrI	GCNGC	5 cut(s)	7, 148, 442, 445, 551
PleI	GAGTC	5 cut(s)	119, 497, 710, 752, 836
PluTI	GGCGCC	1 cut(s)	862
PpsI	GAGTC	5 cut(s)	119, 497, 710, 752, 836
PpuMI	RGGWCCY	1 cut(s)	539
PshAI	GACNNNNGTC	1 cut(s)	723
Psp1406I	AACGTT	2 cut(s)	186, 303
Psp5II	RGGWCCY	1 cut(s)	539
PspEI	GGTNACC	2 cut(s)	287, 626
PspN4I	GGNNCC	2 cut(s)	502, 860
PspPI	GGNCC	3 cut(s)	500, 539, 772
PspPPI	RGGWCCY	1 cut(s)	539
PstNI	CAGNNNCTG	2 cut(s)	428, 569
PsyI	GACNNNGTC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	111, 273
SatI	GCNGC	5 cut(s)	6, 147, 441, 444, 550
Sau3AI	GATC	1 cut(s)	728
Sau96I	GGNCC	3 cut(s)	500, 539, 772
SchI	GAGTC	5 cut(s)	119, 498, 711, 752, 837
SduI	GDGCHC	1 cut(s)	316
SfoI	GGCGCC	1 cut(s)	860
SinI	GGWCC	3 cut(s)	500, 539, 772
SmlI	CTYRAG	2 cut(s)	659, 765
SmoI	CTYRAG	2 cut(s)	659, 765
Sse9I	AATT	3 cut(s)	118, 378, 822
SseBI	AGGCCT	1 cut(s)	850
SsiI	CCGC	3 cut(s)	147, 165, 242
SspDI	GGCGCC	1 cut(s)	858
SspI	AATATT	1 cut(s)	866
SspMI	CTAG	2 cut(s)	543, 846
StuI	AGGCCT	1 cut(s)	850
StyI	CCWWGG	4 cut(s)	542, 732, 792, 854
TaaI	ACNGT	4 cut(s)	311, 614, 722, 815
TaiI	ACGT	3 cut(s)	189, 237, 306
TaqI	TCGA	2 cut(s)	207, 727
TasI	AATT	3 cut(s)	118, 378, 822
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	2 cut(s)	111, 273
Tru9I	TTAA	2 cut(s)	111, 273
TscAI	CASTG	2 cut(s)	316, 727
TseFI	GTSAC	2 cut(s)	409, 748
TseI	GCWGC	4 cut(s)	5, 440, 443, 549
Tsp45I	GTSAC	2 cut(s)	409, 748
TspGWI	ACGGA	2 cut(s)	70, 118
TspRI	CASTG	2 cut(s)	316, 727
Tth111I	GACNNNGTC	1 cut(s)	415
VpaK11BI	GGWCC	3 cut(s)	500, 539, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmaJI	CCTAGG	1 cut(s)	542
XmiI	GTMKAC	2 cut(s)	478, 817
XspI	CTAG	2 cut(s)	543, 846
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.