Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

34562732 .. 34564768

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACTACCTCTACGGCTTCGCTGGTTCTTCCTTCCCTGACCCCCAAAACCCTAGCCCTCTACACTCCCAAACCCACTTCGCTCTCGCTCTTCTCTCTCTCCTTCTCGTCCCTAAAACCCATTTCGATTTCGGCCTCATTTCTCAACTCCGGCAAGGGGTTTCAGTCGTCTCGGTCGGTCGTGCGAGGCGTCGCTGTTTCGGACTTCGAGCAGGATGAGGAGGAACTTGATGGAAGGGCATTGAGGGTAAACTATGGACCTCCCCCGCCGAGGTCTGAGGATTCTTTCAGAGGTGCCAGAGGTCCCCCCAGAGGTGGTGGAGGTTATGGTGACTCTTCCAACCGCCTGTATGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCACTTGAGAACTTGTTTAATGAGCAAGGAAAGGTTTTGGAGGCCAAGGTAGTTTTTGACAGGGACAGTGGCCGGTCGAGGGGTTTTGGTTTTGTGACATATGGTTCCGCTGAAGAAATGAACAGTGCCATTGAGTCTTTGGATGGCGTTGACTTGGGTGGAAGATCTATTCGCAATATTCGATGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

192

Amino Acids

20.5

Weight (kDa)

6.35

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 186	1.9e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	3 cut(s)	266, 343, 492
AcoI	YGGCCR	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	7 cut(s)	156, 270, 311, 314, 352, 367, 463
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	132, 426, 454
AspS9I	GGNCC	2 cut(s)	257, 302
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	257, 302
BanI	GGYRCC	1 cut(s)	293
BccI	CCATC	3 cut(s)	224, 521, 561
BceAI	ACGGC	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	257, 302
BmgT120I	GGNCC	2 cut(s)	257, 302
BmiI	GGNNCC	3 cut(s)	295, 304, 490
BpuEI	CTTGAG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	269, 429
Bsc4I	CCNNNNNNNGG	7 cut(s)	156, 270, 311, 314, 352, 367, 463
Bse118I	RCCGGY	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	269, 429
BseGI	GGATG	2 cut(s)	220, 532
BseLI	CCNNNNNNNGG	7 cut(s)	156, 270, 311, 314, 352, 367, 463
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	233
Bsh1285I	CGRYCG	3 cut(s)	176, 180, 461
BshFI	GGCC	3 cut(s)	134, 428, 456
BshNI	GGYRCC	1 cut(s)	293
BsiEI	CGRYCG	3 cut(s)	176, 180, 461
BsiSI	CCGG	2 cut(s)	150, 457
BslFI	GGGAC	3 cut(s)	94, 288, 461
BslI	CCNNNNNNNGG	7 cut(s)	156, 270, 311, 314, 352, 367, 463
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	3 cut(s)	94, 288, 461
BsnI	GGCC	3 cut(s)	134, 428, 456
Bsp143I	GATC	1 cut(s)	548
BspACI	CCGC	3 cut(s)	266, 343, 492
BspANI	GGCC	3 cut(s)	134, 428, 456
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	295, 304, 490
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	456
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	269, 429
BssMI	GATC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	452, 509
Bst6I	CTCTTC	2 cut(s)	95, 340
BstACI	GRCGYC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	220, 532
BstKTI	GATC	1 cut(s)	551
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	548
BstMCI	CGRYCG	3 cut(s)	176, 180, 461
BstPI	GGTNACC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	134, 428, 456
BtsCI	GGATG	2 cut(s)	220, 532
BtsIMutI	CAGTG	2 cut(s)	457, 514
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	257, 302
CseI	GACGC	1 cut(s)	178
CviAII	CATG	1 cut(s)	366
CviJI	RGCY	5 cut(s)	17, 56, 134, 428, 456
CviKI_1	RGCY	5 cut(s)	17, 56, 134, 428, 456
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	95, 340
EarI	CTCTTC	2 cut(s)	95, 340
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	257, 302
Eco57I	CTGAAG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	1 cut(s)	369
FaiI	YATR	6 cut(s)	255, 327, 351, 367, 484, 486
FaqI	GGGAC	3 cut(s)	94, 288, 461
FatI	CATG	1 cut(s)	365
FauI	CCCGC	1 cut(s)	273
FauNDI	CATATG	1 cut(s)	484
FokI	GGATG	2 cut(s)	227, 539
FspBI	CTAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	134, 428, 456
HapII	CCGG	2 cut(s)	150, 457
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	369
HincII	GTYRAC	2 cut(s)	376, 535
HindII	GTYRAC	2 cut(s)	376, 535
HinfI	GANTC	3 cut(s)	281, 332, 518
HpaII	CCGG	2 cut(s)	150, 457
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	250, 376, 535
Hpy188I	TCNGA	3 cut(s)	202, 277, 290
Hpy8I	GTNNAC	3 cut(s)	250, 376, 535
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	42, 112, 228
HpyCH4III	ACNGT	2 cut(s)	452, 509
HpyCH4V	TGCA	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	548
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	8, 50, 163, 197, 310, 322, 359, 430, 470
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	329, 356, 478
MalI	GATC	1 cut(s)	550
MboI	GATC	1 cut(s)	548
MboII	GAAGA	5 cut(s)	20, 82, 327, 509, 558
MflI	RGATCY	1 cut(s)	548
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	2 cut(s)	326, 527
MmeI	TCCRAC	1 cut(s)	363
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	150, 457
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	548
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	3 cut(s)	295, 304, 490
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	329, 478
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 562
PfeI	GAWTC	1 cut(s)	281
PleI	GAGTC	2 cut(s)	326, 526
PpsI	GAGTC	2 cut(s)	326, 526
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	295, 304, 490
PspPI	GGNCC	2 cut(s)	257, 302
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	2 cut(s)	257, 302
SchI	GAGTC	2 cut(s)	326, 527
SinI	GGWCC	2 cut(s)	257, 302
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	3 cut(s)	266, 343, 492
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	452, 509
TaqI	TCGA	4 cut(s)	125, 207, 461, 565
TaqII	GACCGA	2 cut(s)	162, 166
TasI	AATT	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	457, 514
TseFI	GTSAC	2 cut(s)	329, 478
Tsp45I	GTSAC	2 cut(s)	329, 478
TspDTI	ATGAA	1 cut(s)	518
TspRI	CASTG	2 cut(s)	457, 514
VpaK11BI	GGWCC	2 cut(s)	257, 302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.