Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

17820677 .. 17822155

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTATAAATAGAATTGGTTTGAGAAAGGAACTTGATGGAAGGGCATTGAGGGTAAACTATGGGCCTCCCCCACCTAGGTCTGAGGATTCTTTCAGAGGTGCCAGAGGTCCCCCCAGAGGTGGTGGAGGTTATGGTGACTCTTCCAACCGCCTGTATGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCACTTGAGAACTTGTTTAATGAGCAAGGAAAGGTTTTGGAGGCCAAGGTAGTTTTTGACAGGGACAGTGGCCGGTCGAGGGGTTTTGGTTTTGTGACATATGGTTCCGCTGAAGAAATGAACAGTGCCATTGAGTCTTTGGATGGCGTTGACTTGGGTGGAAGATCTATTCGTAATATTCGATGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

127

Amino Acids

13.83

Weight (kDa)

9.21

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 122	7.2e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	2 cut(s)	151, 300
AcoI	YGGCCR	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	6 cut(s)	78, 119, 122, 160, 175, 271
AoxI	GGCC	3 cut(s)	65, 234, 262
AspA2I	CCTAGG	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	65, 110
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	101
BccI	CCATC	3 cut(s)	32, 329, 369
BfaI	CTAG	1 cut(s)	78
BglII	AGATCT	1 cut(s)	356
BlnI	CCTAGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	65, 110
BmiI	GGNNCC	3 cut(s)	103, 112, 298
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	77, 237
Bsc4I	CCNNNNNNNGG	6 cut(s)	78, 119, 122, 160, 175, 271
Bse118I	RCCGGY	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	77, 237
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	6 cut(s)	78, 119, 122, 160, 175, 271
BseMII	CTCAG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	67, 236, 264
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	2 cut(s)	96, 269
BslI	CCNNNNNNNGG	6 cut(s)	78, 119, 122, 160, 175, 271
BsmFI	GGGAC	2 cut(s)	96, 269
BsnI	GGCC	3 cut(s)	67, 236, 264
Bsp143I	GATC	1 cut(s)	356
BspACI	CCGC	2 cut(s)	151, 300
BspANI	GGCC	3 cut(s)	67, 236, 264
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	103, 112, 298
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	77, 237
BssMI	GATC	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	77, 237
Bst4CI	ACNGT	2 cut(s)	260, 317
Bst6I	CTCTTC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	84
BstEII	GGTNACC	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstMCI	CGRYCG	1 cut(s)	269
BstPI	GGTNACC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	67, 236, 264
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	265, 322
Cfr10I	RCCGGY	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	65, 110
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	4 cut(s)	5, 67, 236, 264
CviKI_1	RGCY	4 cut(s)	5, 67, 236, 264
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	77, 237
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	77, 237
ErhI	CCWWGG	2 cut(s)	77, 237
FaeI	CATG	1 cut(s)	177
FaiI	YATR	7 cut(s)	8, 63, 135, 159, 175, 292, 294
FaqI	GGGAC	2 cut(s)	96, 269
FatI	CATG	1 cut(s)	173
FauNDI	CATATG	1 cut(s)	292
FokI	GGATG	1 cut(s)	347
FspBI	CTAG	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	67, 236, 264
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	1 cut(s)	177
HincII	GTYRAC	2 cut(s)	184, 343
HindII	GTYRAC	2 cut(s)	184, 343
HinfI	GANTC	3 cut(s)	89, 140, 326
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	58, 184, 343
Hpy188I	TCNGA	2 cut(s)	85, 98
Hpy8I	GTNNAC	3 cut(s)	58, 184, 343
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	2 cut(s)	260, 317
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	356
LpnPI	CCDG	5 cut(s)	118, 130, 167, 238, 278
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	137, 164, 286
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	3 cut(s)	135, 317, 366
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	2 cut(s)	15, 187
MlyI	GAGTC	2 cut(s)	134, 335
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	45, 78, 79, 92, 101, 113, 122, 226, 264
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	3 cut(s)	103, 112, 298
NmuCI	GTSAC	2 cut(s)	137, 286
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	134, 334
PpsI	GAGTC	2 cut(s)	134, 334
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	164
PspN4I	GGNNCC	3 cut(s)	103, 112, 298
PspPI	GGNCC	2 cut(s)	65, 110
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	2 cut(s)	65, 110
SchI	GAGTC	2 cut(s)	134, 335
SetI	ASST	9 cut(s)	79, 83, 103, 112, 124, 133, 171, 228, 243
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	15, 187
SsiI	CCGC	2 cut(s)	151, 300
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	77, 237
TaaI	ACNGT	2 cut(s)	260, 317
TaqI	TCGA	2 cut(s)	269, 373
TasI	AATT	2 cut(s)	15, 187
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	265, 322
TseFI	GTSAC	2 cut(s)	137, 286
Tsp45I	GTSAC	2 cut(s)	137, 286
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	265, 322
VpaK11BI	GGWCC	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.