Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

18780623 .. 18783002

Gene Structure 2380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1117600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTCGAGACGACCGGAAGAAGCAGGGGATTTGGGTTTGTGACTATGTCAAGTGTTCAAGAAGCTGAATTTGCTGCTCGCCAGCTAAATGGCTATTGTAGTGATTGGGCATTGAGGGTAAACTATGGACCTCTTCCTCCTCGGACTGAGGTTTCCTCTTTCAGAGGTGCCAGAGGTCCCAGAGGTGGTGGTGGAGGTTATGACTCTAACAACCGCCTTTACGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCTCTTGAGAACTTGTTTAGTGAGCAAGGAAAGGTTTTGGAAGCCAAGGTAGTTTATGACAGGGACAGTGGCAGATCGATGGGTTTCAGTTTTGTAACTTATGATACTGCTAATCAAATGAACAGTGTCATTGAATCGTTGGATGGAGTTGTTGTTAAGATTGTAACTATGCCCCTCATTGTTGTTTGTCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

5.22

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	73 - 136	3.2e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	185, 223, 238
AgsI	TTSAA	2 cut(s)	59, 389
AluBI	AGCT	2 cut(s)	65, 85
AluI	AGCT	2 cut(s)	65, 85
Alw26I	GTCTC	1 cut(s)	2
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	128, 176
AvaII	GGWCC	2 cut(s)	128, 176
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	328, 392
BcoDI	GTCTC	1 cut(s)	2
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	128, 176
BmgT120I	GGNCC	2 cut(s)	128, 176
BmiI	GGNNCC	2 cut(s)	169, 178
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpuEI	CTTGAG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	140, 300
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 223, 238
BseCI	ATCGAT	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	140, 300
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	185, 223, 238
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	162, 332
BslI	CCNNNNNNNGG	3 cut(s)	185, 223, 238
BsmAI	GTCTC	1 cut(s)	2
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	162, 332
Bsp143I	GATC	1 cut(s)	329
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	169, 178
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	140, 300
BssMI	GATC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	323, 380
Bst6I	CTCTTC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	1 cut(s)	329
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	332
BsuTUI	ATCGAT	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	328, 385
Cac8I	GCNNGC	2 cut(s)	79, 83
Cfr13I	GGNCC	2 cut(s)	128, 176
ClaI	ATCGAT	1 cut(s)	332
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	5 cut(s)	65, 85, 93, 257, 299
CviKI_1	RGCY	5 cut(s)	65, 85, 93, 257, 299
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	128, 176
Eco91I	GGTNACC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	1 cut(s)	240
FaiI	YATR	7 cut(s)	47, 126, 201, 238, 312, 357, 425
FaqI	GGGAC	2 cut(s)	162, 332
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	203, 389
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	121, 247
Hpy188I	TCNGA	2 cut(s)	144, 164
Hpy188III	TCNNGA	4 cut(s)	7, 59, 260, 446
Hpy8I	GTNNAC	2 cut(s)	121, 247
HpyCH4III	ACNGT	2 cut(s)	323, 380
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	10, 28, 95, 184, 193, 301
Lsp1109I	GCAGC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	4 cut(s)	40, 227, 349, 418
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	2 cut(s)	30, 125
MluCI	AATT	2 cut(s)	68, 250
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	375
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	169, 178
NmuCI	GTSAC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	389
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
PspEI	GGTNACC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	169, 178
PspPI	GGNCC	2 cut(s)	128, 176
PspPPI	RGGWCCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	2 cut(s)	128, 176
SchI	GAGTC	1 cut(s)	197
SinI	GGWCC	2 cut(s)	128, 176
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	68, 250
SsiI	CCGC	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	323, 380
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	6, 332
TasI	AATT	2 cut(s)	68, 250
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	328, 385
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	328, 385
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	128, 176
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.