Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

59440573 .. 59444799

Gene Structure 4227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAAGGCCCGCCCCTACTCGTCATCGGACTCCCTCCCGGGCCGAACACGGCGGCAAAACGCCGACCGCGTTCGGCGGGAGAGAAACACTCTGTCGAAAACTCCGTCCATGGAGCCTTTGATTCCGGTGTCCGGTACTACTCTATTTCTTGGTGACCTAAATCTTTTCGTGGGAAACCTTCCCTTCACTGTTGATAGTGCTCGGCTAGTTGAGCTCTTCGAAGGTCTTTGGGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

79

Amino Acids

8.91

Weight (kDa)

9.18

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	4 cut(s)	10, 52, 67, 76
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	2 cut(s)	202, 216
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	6, 40
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	2 cut(s)	7, 40
AsuC2I	CCSGG	2 cut(s)	38, 39
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	2 cut(s)	202, 216
BceAI	ACGGC	1 cut(s)	65
BcnI	CCSGG	2 cut(s)	38, 39
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	38, 39
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	7, 40
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	38, 39
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
Bpu14I	TTCGAA	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	38, 39
BsaJI	CCNNGG	2 cut(s)	37, 108
BsaWI	WCCGGW	2 cut(s)	124, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	37, 108
BseLI	CCNNNNNNNGG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	8, 42
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	202, 216
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	38, 125, 132
BslI	CCNNNNNNNGG	1 cut(s)	131
BsnI	GGCC	2 cut(s)	8, 42
BsoBI	CYCGRG	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	202, 216
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	4 cut(s)	10, 52, 67, 76
BspANI	GGCC	2 cut(s)	8, 42
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	37, 108
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	69
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	36, 37
BstUI	CGCG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	8, 42
BtgI	CCRYGG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	7, 40
Cfr9I	CCCGGG	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	8, 42, 115, 205, 214
CviKI_1	RGCY	5 cut(s)	8, 42, 115, 205, 214
CviQI	GTAC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	112
FaiI	YATR	1 cut(s)	110
FatI	CATG	1 cut(s)	108
FauI	CCCGC	2 cut(s)	17, 69
Fnu4HI	GCNGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	8, 42
HapII	CCGG	3 cut(s)	38, 125, 132
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	2 cut(s)	29, 121
HpaII	CCGG	3 cut(s)	38, 125, 132
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	188, 193, 215
HpyCH4III	ACNGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	51, 138, 145
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	152
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	202, 216
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	44
MspI	CCGG	3 cut(s)	38, 125, 132
MspR9I	CCNGG	2 cut(s)	38, 39
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	2 cut(s)	38, 39
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 101
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	7, 40
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	221
SatI	GCNGC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	7, 40
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	38, 39
SduI	GDGCHC	2 cut(s)	202, 216
SetI	ASST	4 cut(s)	159, 180, 216, 226
SfuI	TTCGAA	1 cut(s)	219
SmaI	CCCGGG	1 cut(s)	39
SsiI	CCGC	4 cut(s)	10, 52, 67, 76
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	36, 37
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	95, 219
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	93
TspMI	CCCGGG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	193
XmaI	CCCGGG	1 cut(s)	37
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.