Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

17798898 .. 17801434

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1096600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACTGCCTCCACAGCTACCCTCGCTCTTCCTTCTCTTTCGCCCAAAACCCTAGCCCTCTACACCCCCAAAGCCGCCTCAATCTCGCTCTACTCCGCCCTAGCGCTCGGCTGTAAACCCATTTCAATTTCGGCCTCGTTTCTCAACTCCGGGAAGGGGTTTCAAAGCGTTTCGTCTCGGTTCGTCCGAAACGTCGCCGTCTCATCCGAGTTCGAGCAGGATGAGGAGGTCCTCAGCGACGACGGAGAGGCCTCCCCTGAACCCAAACTCTTCGTGGGTAACCTTCCCTTCAGCGTCGATAGCGCTCAGCTCGCTGGAATCTTCGAAAGCGCTGGAAATGTCGAGATGGTCGAGGTGATATATGACAAGACGACCGGAAGAAGCAGAGGATTTGGATTTGTGACTATGTCCAATGTTCAAGAAGCTGAATCTGCTGCTCGCCAGCTAAATGGCTATGAACTTGACGGCAGGGCATTGAGGGTAAACTATGGACCTCCTCCCCCTCGGACTGAGGATTCCTCTTTCAGAGGTGCCAGAGGTCCCAGAGGTGGTGGTGGTTATGACTCTAACAACCGCCTTTACGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCTCTTGAGAACTTGTTTAGTGAGCAAGGAAAGGTTTTGGAAGCCAAGGTAGTTTTTGACAGGGACAGTGGCAGATCGAGGGGTTTCGGTTTTGTAACTTATGATACTGCTGATGAAATGAACAGTGCCATTGAATCATTGGATGGAGTTGACTTAAATGGAAGATCTATCCGAGTGTCTGCGGCAGAACCTAGGCCGAGGCGTCAATTTTTAGGAGCGGTTAGTGACAAGATCATGCTGCCTTGCGCCATGGTTGGCTTTGTGAGCGGTAGTGGTGGTTTTTTTACATCTGCCTGTAGATGGACAAGAGCAGAGAAGACTGTTTTGAGAGTTGTAAGATTTATATTCCGAGTGACTTGGCCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

328

Amino Acids

35.21

Weight (kDa)

5.83

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	90 - 160	1.4e-19	RNA recognition motif
RRM_1	PF00076	193 - 263	3.6e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccBSI	CCGCTC	2 cut(s)	833, 882
AciI	CCGC	6 cut(s)	75, 96, 574, 797, 833, 882
AcuI	CTGAAG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	817
AfeI	AGCGCT	3 cut(s)	105, 304, 331
AfiI	CCNNNNNNNGG	5 cut(s)	156, 548, 583, 598, 915
AgsI	TTSAA	4 cut(s)	126, 164, 419, 749
AluBI	AGCT	4 cut(s)	17, 310, 425, 445
AluI	AGCT	4 cut(s)	17, 310, 425, 445
Alw26I	GTCTC	2 cut(s)	180, 205
Aor51HI	AGCGCT	3 cut(s)	105, 304, 331
AoxI	GGCC	4 cut(s)	132, 249, 809, 974
ApeKI	GCWGC	2 cut(s)	434, 853
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	4 cut(s)	106, 305, 332, 863
AspS9I	GGNCC	4 cut(s)	229, 491, 539, 975
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	3 cut(s)	229, 491, 539
AvrII	CCTAGG	1 cut(s)	806
BanI	GGYRCC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	938
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	421, 840
BccI	CCATC	3 cut(s)	340, 752, 909
BceAI	ACGGC	2 cut(s)	182, 481
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	180, 205
BfaI	CTAG	3 cut(s)	53, 101, 807
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	3 cut(s)	107, 306, 333
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	4 cut(s)	75, 435, 798, 854
BlnI	CCTAGG	1 cut(s)	806
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	4 cut(s)	76, 436, 799, 855
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	3 cut(s)	229, 491, 539
BmgT120I	GGNCC	4 cut(s)	229, 491, 539, 975
BmiI	GGNNCC	2 cut(s)	532, 541
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	972
BmuI	ACTGGG	1 cut(s)	972
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
Bpu10I	CCTNAGC	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	583
BsaHI	GRCGYC	1 cut(s)	817
BsaJI	CCNNGG	5 cut(s)	503, 660, 806, 812, 864
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 548, 583, 598, 915
Bse1I	ACTGG	1 cut(s)	978
BseDI	CCNNGG	5 cut(s)	503, 660, 806, 812, 864
BseGI	GGATG	3 cut(s)	203, 226, 763
BseLI	CCNNNNNNNGG	5 cut(s)	156, 548, 583, 598, 915
BseMII	CTCAG	3 cut(s)	247, 320, 501
BseNI	ACTGG	1 cut(s)	978
BseRI	GAGGAG	2 cut(s)	239, 486
BseXI	GCAGC	2 cut(s)	421, 840
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	134, 251, 811, 976
BshNI	GGYRCC	1 cut(s)	530
BsiEI	CGRYCG	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	150, 375
BslFI	GGGAC	2 cut(s)	525, 692
BslI	CCNNNNNNNGG	5 cut(s)	156, 548, 583, 598, 915
BsmAI	GTCTC	2 cut(s)	180, 205
BsmBI	CGTCTC	2 cut(s)	180, 205
BsmFI	GGGAC	2 cut(s)	525, 692
BsnI	GGCC	4 cut(s)	134, 251, 811, 976
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	689, 779, 846
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	6 cut(s)	75, 96, 574, 797, 833, 882
BspANI	GGCC	4 cut(s)	134, 251, 811, 976
BspCNI	CTCAG	3 cut(s)	246, 319, 502
BspLI	GGNNCC	2 cut(s)	532, 541
BspQI	GCTCTTC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	530
BsrBI	CCGCTC	2 cut(s)	833, 882
BsrI	ACTGG	1 cut(s)	978
BssECI	CCNNGG	5 cut(s)	503, 660, 806, 812, 864
BssMI	GATC	3 cut(s)	689, 779, 846
BssNI	GRCGYC	1 cut(s)	817
BssT1I	CCWWGG	3 cut(s)	660, 806, 864
Bst4CI	ACNGT	3 cut(s)	683, 740, 937
Bst6I	CTCTTC	2 cut(s)	33, 275
BstACI	GRCGYC	1 cut(s)	817
BstBAI	YACGTR	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	312, 439, 443
BstDEI	CTNAG	3 cut(s)	233, 306, 510
BstDSI	CCRYGG	1 cut(s)	864
BstEII	GGTNACC	2 cut(s)	278, 587
BstF5I	GGATG	3 cut(s)	203, 226, 763
BstH2I	RGCGCY	3 cut(s)	107, 306, 333
BstHHI	GCGC	4 cut(s)	106, 305, 332, 863
BstKTI	GATC	3 cut(s)	692, 782, 849
BstMAI	GTCTC	2 cut(s)	180, 205
BstMBI	GATC	3 cut(s)	689, 779, 846
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 23, 300, 311, 431, 879
BstPI	GGTNACC	2 cut(s)	278, 587
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	910
BstV1I	GCAGC	2 cut(s)	421, 840
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	1 cut(s)	779
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	779
BsuRI	GGCC	4 cut(s)	134, 251, 811, 976
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	3 cut(s)	203, 226, 763
BtsIMutI	CAGTG	2 cut(s)	688, 745
Cac8I	GCNNGC	3 cut(s)	312, 439, 443
CfoI	GCGC	4 cut(s)	106, 305, 332, 863
Cfr13I	GGNCC	4 cut(s)	229, 491, 539, 975
CseI	GACGC	2 cut(s)	283, 806
CviAII	CATG	3 cut(s)	597, 850, 865
DdeI	CTNAG	3 cut(s)	233, 306, 510
DpnI	GATC	3 cut(s)	691, 781, 848
DpnII	GATC	3 cut(s)	689, 779, 846
Eam1104I	CTCTTC	2 cut(s)	33, 275
EarI	CTCTTC	2 cut(s)	33, 275
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	660, 806, 864
Eco147I	AGGCCT	1 cut(s)	251
Eco47I	GGWCC	3 cut(s)	229, 491, 539
Eco47III	AGCGCT	3 cut(s)	105, 304, 331
Eco57I	CTGAAG	1 cut(s)	274
Eco91I	GGTNACC	2 cut(s)	278, 587
EcoO109I	RGGNCCY	2 cut(s)	229, 539
EcoO65I	GGTNACC	2 cut(s)	278, 587
EcoT14I	CCWWGG	3 cut(s)	660, 806, 864
ErhI	CCWWGG	3 cut(s)	660, 806, 864
Esp3I	CGTCTC	2 cut(s)	180, 205
FaeI	CATG	3 cut(s)	600, 853, 868
FaqI	GGGAC	2 cut(s)	525, 692
FatI	CATG	3 cut(s)	596, 849, 864
Fnu4HI	GCNGC	4 cut(s)	75, 435, 798, 854
FokI	GGATG	3 cut(s)	190, 233, 770
Fsp4HI	GCNGC	4 cut(s)	75, 435, 798, 854
FspBI	CTAG	3 cut(s)	53, 101, 807
GlaI	GCGC	4 cut(s)	105, 304, 331, 862
GluI	GCNGC	4 cut(s)	75, 435, 798, 854
HaeII	RGCGCY	3 cut(s)	107, 306, 333
HaeIII	GGCC	4 cut(s)	134, 251, 811, 976
HapII	CCGG	2 cut(s)	150, 375
HgaI	GACGC	2 cut(s)	283, 806
HhaI	GCGC	4 cut(s)	106, 305, 332, 863
Hin1I	GRCGYC	1 cut(s)	817
Hin1II	CATG	3 cut(s)	600, 853, 868
Hin6I	GCGC	4 cut(s)	104, 303, 330, 861
HinP1I	GCGC	4 cut(s)	104, 303, 330, 861
HincII	GTYRAC	2 cut(s)	607, 766
HindII	GTYRAC	2 cut(s)	607, 766
HinfI	GANTC	5 cut(s)	318, 428, 515, 563, 749
HpaII	CCGG	2 cut(s)	150, 375
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	4 cut(s)	116, 484, 607, 766
Hpy188I	TCNGA	6 cut(s)	188, 208, 507, 527, 788, 965
Hpy188III	TCNNGA	3 cut(s)	343, 419, 620
Hpy8I	GTNNAC	4 cut(s)	116, 484, 607, 766
Hpy99I	CGWCG	4 cut(s)	197, 242, 245, 299
HpyAV	CCTTC	4 cut(s)	42, 148, 293, 298
HpyCH4III	ACNGT	3 cut(s)	683, 740, 937
HpyCH4IV	ACGT	2 cut(s)	192, 582
HpyCH4V	TGCA	1 cut(s)	596
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 23, 300, 311, 431, 879
HpyF3I	CTNAG	3 cut(s)	233, 306, 510
HpySE526I	ACGT	2 cut(s)	192, 582
Hsp92I	GRCGYC	1 cut(s)	817
Hsp92II	CATG	3 cut(s)	600, 853, 868
HspAI	GCGC	4 cut(s)	104, 303, 330, 861
Kzo9I	GATC	3 cut(s)	689, 779, 846
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	2 cut(s)	421, 840
MaeI	CTAG	3 cut(s)	53, 101, 807
MaeII	ACGT	2 cut(s)	192, 582
MaeIII	GTNAC	6 cut(s)	278, 400, 587, 709, 839, 967
MalI	GATC	3 cut(s)	691, 781, 848
MbiI	CCGCTC	2 cut(s)	833, 882
MboI	GATC	3 cut(s)	689, 779, 846
MboII	GAAGA	6 cut(s)	20, 262, 313, 390, 789, 943
MflI	RGATCY	1 cut(s)	779
MluCI	AATT	3 cut(s)	126, 610, 821
MlyI	GAGTC	1 cut(s)	557
MseI	TTAA	2 cut(s)	770, 982
MspI	CCGG	2 cut(s)	150, 375
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	6 cut(s)	14, 23, 300, 311, 431, 879
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	3 cut(s)	689, 779, 846
NlaIII	CATG	3 cut(s)	600, 853, 868
NlaIV	GGNNCC	2 cut(s)	532, 541
NmeAIII	GCCGAG	2 cut(s)	87, 837
NmuCI	GTSAC	3 cut(s)	400, 839, 967
NspV	TTCGAA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	3 cut(s)	184, 189, 348
PfeI	GAWTC	4 cut(s)	318, 428, 515, 749
PflFI	GACNNNGTC	1 cut(s)	406
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	76, 436, 799, 855
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	583
PpuMI	RGGWCCY	2 cut(s)	229, 539
Psp5II	RGGWCCY	2 cut(s)	229, 539
PspEI	GGTNACC	2 cut(s)	278, 587
PspN4I	GGNNCC	2 cut(s)	532, 541
PspPI	GGNCC	4 cut(s)	229, 491, 539, 975
PspPPI	RGGWCCY	2 cut(s)	229, 539
PsuI	RGATCY	1 cut(s)	779
PsyI	GACNNNGTC	1 cut(s)	406
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	770, 982
SatI	GCNGC	4 cut(s)	75, 435, 798, 854
Sau3AI	GATC	3 cut(s)	689, 779, 846
Sau96I	GGNCC	4 cut(s)	229, 491, 539, 975
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	3 cut(s)	229, 491, 539
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	3 cut(s)	126, 610, 821
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	6 cut(s)	75, 96, 574, 797, 833, 882
SspMI	CTAG	3 cut(s)	53, 101, 807
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	660, 806, 864
TaaI	ACNGT	3 cut(s)	683, 740, 937
TaiI	ACGT	2 cut(s)	195, 585
TaqI	TCGA	6 cut(s)	213, 297, 324, 342, 351, 692
TasI	AATT	3 cut(s)	126, 610, 821
TauI	GCSGC	2 cut(s)	77, 800
TfiI	GAWTC	4 cut(s)	318, 428, 515, 749
Tru1I	TTAA	2 cut(s)	770, 982
Tru9I	TTAA	2 cut(s)	770, 982
TscAI	CASTG	2 cut(s)	688, 745
TseFI	GTSAC	3 cut(s)	400, 839, 967
TseI	GCWGC	2 cut(s)	434, 853
Tsp45I	GTSAC	3 cut(s)	400, 839, 967
TspDTI	ATGAA	3 cut(s)	471, 744, 749
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	688, 745
Tth111I	GACNNNGTC	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	229, 491, 539
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 751
XmaJI	CCTAGG	1 cut(s)	806
XspI	CTAG	3 cut(s)	53, 101, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.