Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

23672584 .. 23674938

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACTGCCTCCACGGCTTCGCTAGCTCTTCCTTCTCTTTACCCCAAAACACTAGCCCTTTACACTCCCAAACCCACTTCAGTCCCGTTCTACTCTGTCTCTTCGTCATCTCTAACGCTCGGCTGTAAGCCCATTTCAATTTCGGCTTCATTTCTCAACTCGGGAAGGTTTCAGAGCGCGTCGTCTCGGTTCGTGCGAAACGTCGCCGTTTCGTCCGAGTTCGAGCAGGATGAGGAGGTTCTCAGCGACGATGGAGAGGCCAGTTTCGCGCCTGACCTCAAGCTCTTCGTCGGAAACCTTCCCTTCAGCGTTGACAGTGCTCAGCTCGCTGGGCTCTTCGAAAGTGCTGGAAATGTCGAGATGGTTGAGGTGATATATGACAAGACAACTGGAAGAAGCAGAGGATTTGGGTTTGTGACTATGTCTAGTGTCCAGGAAGCTGAAGGAGCTGCTCGACAGCTAAATGGTTATGAACTTGACGGAAGGGCATTGAGGGTAAACTATGGACCTCCTCCTCCTAGGTCTGAAGACTCTTTTAGAGGTGCCAGAGGTGGTGGAGGTTCTGACTCCTCCAACCGCCTTTATGTGGGTAACCTCGCATGGGGTGTTGACAATCTAGCACTTGAGAACTTGTTTAGTGAGCAAGGAAAGGTTTTGGAAGCCAAGGTAGTTTATGACAGGGACAGTGGGCGATCAAGGGGTTTTGGTTTTGTAACTTATGGTACTGCCGATGAAATGAACAGTGCCATGGAATCGTTGGATGGAGTTGACTTGAATGGAAGATCTATCCGAGTAACCGCAGCAGAACCTAGGCCAAGGCGTCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

277

Amino Acids

29.63

Weight (kDa)

4.95

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	2 cut(s)	179, 269
AciI	CCGC	2 cut(s)	577, 798
AcuI	CTGAAG	4 cut(s)	63, 289, 462, 546
AcyI	GRCGYC	1 cut(s)	820
AfaI	GTAC	1 cut(s)	724
AfiI	CCNNNNNNNGG	2 cut(s)	586, 601
AgsI	TTSAA	2 cut(s)	138, 775
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	6 cut(s)	26, 283, 325, 440, 449, 460
AluI	AGCT	6 cut(s)	26, 283, 325, 440, 449, 460
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	103, 189
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	258, 812
ApeKI	GCWGC	2 cut(s)	449, 800
AspA2I	CCTAGG	2 cut(s)	518, 809
AspLEI	GCGC	2 cut(s)	179, 271
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	339
AsuNHI	GCTAGC	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	506
AvrII	CCTAGG	2 cut(s)	518, 809
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	436, 812
BccI	CCATC	3 cut(s)	245, 355, 755
BceAI	ACGGC	2 cut(s)	30, 191
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	103, 189
BfaI	CTAG	6 cut(s)	23, 53, 426, 519, 617, 810
BglI	GCCNNNNNGGC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	782
BisI	GCNGC	2 cut(s)	450, 801
BlnI	CCTAGG	2 cut(s)	518, 809
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	2 cut(s)	451, 802
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	434
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	263, 644
BsaHI	GRCGYC	1 cut(s)	820
BsaJI	CCNNGG	6 cut(s)	12, 518, 663, 747, 809, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 601
Bse1I	ACTGG	2 cut(s)	261, 394
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	6 cut(s)	12, 518, 663, 747, 809, 815
BseGI	GGATG	2 cut(s)	235, 766
BseLI	CCNNNNNNNGG	2 cut(s)	586, 601
BseMII	CTCAG	2 cut(s)	256, 335
BseNI	ACTGG	2 cut(s)	261, 394
BseRI	GAGGAG	4 cut(s)	248, 501, 504, 559
BseXI	GCAGC	2 cut(s)	436, 812
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	2 cut(s)	179, 269
BshFI	GGCC	2 cut(s)	260, 814
BshNI	GGYRCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	68, 695
BslI	CCNNNNNNNGG	2 cut(s)	586, 601
BsmAI	GTCTC	2 cut(s)	103, 189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	68, 695
BsnI	GGCC	2 cut(s)	260, 814
BsoBI	CYCGRG	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	322, 336
Bsp143I	GATC	2 cut(s)	692, 782
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	2 cut(s)	577, 798
BspANI	GGCC	2 cut(s)	260, 814
BspCNI	CTCAG	2 cut(s)	255, 334
BspFNI	CGCG	2 cut(s)	179, 269
BspLI	GGNNCC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	26
BspQI	GCTCTTC	3 cut(s)	33, 290, 341
BspT104I	TTCGAA	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	261, 394
BssECI	CCNNGG	6 cut(s)	12, 518, 663, 747, 809, 815
BssMI	GATC	2 cut(s)	692, 782
BssNI	GRCGYC	1 cut(s)	820
BssT1I	CCWWGG	5 cut(s)	518, 663, 747, 809, 815
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	317, 686, 743
Bst6I	CTCTTC	4 cut(s)	33, 106, 290, 341
BstACI	GRCGYC	1 cut(s)	820
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	24, 327
BstDEI	CTNAG	2 cut(s)	242, 321
BstDSI	CCRYGG	2 cut(s)	12, 747
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	235, 766
BstFNI	CGCG	2 cut(s)	179, 269
BstHHI	GCGC	2 cut(s)	179, 271
BstKTI	GATC	2 cut(s)	695, 785
BstMAI	GTCTC	2 cut(s)	103, 189
BstMBI	GATC	2 cut(s)	692, 782
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 23, 266, 326, 331, 446
BstNI	CCWGG	1 cut(s)	434
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	432
BstUI	CGCG	2 cut(s)	179, 269
BstV1I	GCAGC	2 cut(s)	436, 812
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	260, 814
BtgI	CCRYGG	2 cut(s)	12, 747
BtsCI	GGATG	2 cut(s)	235, 766
BtsIMutI	CAGTG	3 cut(s)	322, 691, 748
Cac8I	GCNNGC	2 cut(s)	24, 327
CfoI	GCGC	2 cut(s)	179, 271
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	2 cut(s)	168, 809
Csp6I	GTAC	1 cut(s)	723
CviAII	CATG	2 cut(s)	600, 748
CviQI	GTAC	1 cut(s)	723
DdeI	CTNAG	2 cut(s)	242, 321
DpnI	GATC	2 cut(s)	694, 784
DpnII	GATC	2 cut(s)	692, 782
Eam1104I	CTCTTC	4 cut(s)	33, 106, 290, 341
EarI	CTCTTC	4 cut(s)	33, 106, 290, 341
Eco130I	CCWWGG	5 cut(s)	518, 663, 747, 809, 815
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	4 cut(s)	63, 289, 462, 546
Eco88I	CYCGRG	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	5 cut(s)	518, 663, 747, 809, 815
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	5 cut(s)	518, 663, 747, 809, 815
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	2 cut(s)	603, 751
FaqI	GGGAC	2 cut(s)	68, 695
FatI	CATG	2 cut(s)	599, 747
Fnu4HI	GCNGC	2 cut(s)	450, 801
FokI	GGATG	2 cut(s)	242, 773
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	450, 801
FspBI	CTAG	6 cut(s)	23, 53, 426, 519, 617, 810
GlaI	GCGC	2 cut(s)	178, 270
GluI	GCNGC	2 cut(s)	450, 801
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	260, 814
HgaI	GACGC	2 cut(s)	168, 809
HhaI	GCGC	2 cut(s)	179, 271
Hin1I	GRCGYC	1 cut(s)	820
Hin1II	CATG	2 cut(s)	603, 751
Hin6I	GCGC	2 cut(s)	177, 269
HinP1I	GCGC	2 cut(s)	177, 269
HincII	GTYRAC	3 cut(s)	313, 610, 769
HindII	GTYRAC	3 cut(s)	313, 610, 769
HinfI	GANTC	3 cut(s)	530, 566, 752
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	4 cut(s)	313, 499, 610, 769
Hpy188I	TCNGA	6 cut(s)	174, 217, 293, 526, 565, 791
Hpy188III	TCNNGA	2 cut(s)	162, 358
Hpy8I	GTNNAC	4 cut(s)	313, 499, 610, 769
Hpy99I	CGWCG	4 cut(s)	184, 206, 251, 293
HpyAV	CCTTC	6 cut(s)	42, 159, 308, 313, 437, 477
HpyCH4III	ACNGT	3 cut(s)	317, 686, 743
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 23, 266, 326, 331, 446
HpyF3I	CTNAG	2 cut(s)	242, 321
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	820
Hsp92II	CATG	2 cut(s)	603, 751
HspAI	GCGC	2 cut(s)	177, 269
Kzo9I	GATC	2 cut(s)	692, 782
LguI	GCTCTTC	3 cut(s)	33, 290, 341
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	2 cut(s)	436, 812
MaeI	CTAG	6 cut(s)	23, 53, 426, 519, 617, 810
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	4 cut(s)	415, 590, 712, 793
MalI	GATC	2 cut(s)	694, 784
MboI	GATC	2 cut(s)	692, 782
MboII	GAAGA	7 cut(s)	20, 93, 277, 328, 405, 539, 792
MflI	RGATCY	1 cut(s)	782
MhlI	GDGCHC	2 cut(s)	322, 336
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	524, 560
MmeI	TCCRAC	3 cut(s)	271, 597, 738
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	179, 269
MwoI	GCNNNNNNNGC	6 cut(s)	14, 23, 266, 326, 331, 446
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	2 cut(s)	692, 782
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	603, 751
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	339
PciSI	GCTCTTC	3 cut(s)	33, 290, 341
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 198
PfeI	GAWTC	1 cut(s)	752
PflFI	GACNNNGTC	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	451, 802
PleI	GAGTC	2 cut(s)	524, 560
PpsI	GAGTC	2 cut(s)	524, 560
Psp6I	CCWGG	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	782
PsyI	GACNNNGTC	1 cut(s)	421
RsaI	GTAC	1 cut(s)	724
RsaNI	GTAC	1 cut(s)	723
SapI	GCTCTTC	3 cut(s)	33, 290, 341
SatI	GCNGC	2 cut(s)	450, 801
Sau3AI	GATC	2 cut(s)	692, 782
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	524, 560
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	322, 336
SfuI	TTCGAA	1 cut(s)	339
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	278, 623
SmoI	CTYRAG	2 cut(s)	278, 623
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	577, 798
SspMI	CTAG	6 cut(s)	23, 53, 426, 519, 617, 810
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	5 cut(s)	518, 663, 747, 809, 815
TaaI	ACNGT	3 cut(s)	317, 686, 743
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	222, 339, 357, 454
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	752
TscAI	CASTG	3 cut(s)	322, 691, 748
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	449, 800
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	138, 486, 747, 752
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	322, 691, 748
Tth111I	GACNNNGTC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmaJI	CCTAGG	2 cut(s)	518, 809
XspI	CTAG	6 cut(s)	23, 53, 426, 519, 617, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.