Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Reverse (-)

10035452 .. 10039891

Gene Structure 4440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACTACCTCCACGGCTTCGCTTGTTCTTCCTTCCCTCACCCCCAAAACCCTAGCCCTCTACTCCCCCAAACCCACTTCCGTCTCCCTCTTCTCTCTCTCCTCCTTCTCCTCCCTCAAACCCATTTCGATTTCGGCTTCATTTCTCAGCTCCGGCAAGGCGTCGAGGTCGTTTGTGCGACACGTCGCCGTTTCGGACTTCGAGCAGGATGAGGAGGTTCTCAGCGGCGACGAAGCCGAGCCCAATTTCTCGCCTGACCTTAAGCTCTTCGTCGGGAACTTGCCCTTCACTGTTGACAGTGCTCAGCTGGCTGAGCTGTTTGAGGGTGCTGGAAATGTTGAGATGGTTGAGGTTATATATGACAAGACGACTGGGAGAAGCAGAGGGTTTGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGTCAGTTCAATGGCTATGAACTTGATGGACGGGCGTTGAGAGTAAACTATGGACCTCCCCCACCTAGGACTGAGGATTCTTTCAGAGGTGCCAGAGGTGGTTCCCCCAGAGGTGGTGGAGGTTATGGTGACTCTTCCAACCGTCTGTATGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCACTTGAAAACTTGTTTAATGAGCAAGGAAAGGTTTTGGAGGCCAAGGTGGTATTTGACAGGGACAGTGGCCGGTCGAGGGGTTTTGGTTTTGTGACATATGGATCTGCTGAAGAAATGAACAGTGCCATTGAATCTTTGGATGGCGTTGACCTGGGTGGTAGATCTATTCGCGTCACCGCGGCAGAACCAAGGCCGCCAAGGCGTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

278

Amino Acids

29.73

Weight (kDa)

5.07

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	89 - 159	4.2e-19	RNA recognition motif
RRM_1	PF00076	194 - 264	4.1e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	2 cut(s)	792, 800
AciI	CCGC	4 cut(s)	225, 798, 800, 815
AclWI	GGATC	1 cut(s)	730
AcoI	YGGCCR	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	2 cut(s)	161, 823
AfiI	CCNNNNNNNGG	4 cut(s)	501, 548, 601, 697
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	445, 626, 752
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	5 cut(s)	150, 265, 307, 316, 431
AluI	AGCT	5 cut(s)	150, 265, 307, 316, 431
Alw21I	GWGCWC	2 cut(s)	304, 415
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	730
AoxI	GGCC	3 cut(s)	660, 688, 812
ApeKI	GCWGC	2 cut(s)	428, 431
AspA2I	CCTAGG	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	31, 575, 787
AvaII	GGWCC	1 cut(s)	488
AvrII	CCTAGG	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	304, 415
BbvI	GCAGC	2 cut(s)	418, 440
BccI	CCATC	3 cut(s)	337, 455, 755
BceAI	ACGGC	2 cut(s)	30, 173
BciT130I	CCWGG	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	53, 501
BfrI	CTTAAG	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	820
BglII	AGATCT	1 cut(s)	782
BisI	GCNGC	5 cut(s)	226, 429, 432, 801, 815
BlnI	CCTAGG	1 cut(s)	500
BlpI	GCTNAGC	2 cut(s)	303, 312
BlsI	GCNGC	5 cut(s)	227, 430, 433, 802, 816
Bme1390I	CCNGG	1 cut(s)	773
Bme18I	GGWCC	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	526, 538
BmrFI	CCNGG	1 cut(s)	773
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu1102I	GCTNAGC	2 cut(s)	303, 312
BsaHI	GRCGYC	2 cut(s)	161, 823
BsaJI	CCNNGG	7 cut(s)	12, 500, 663, 772, 798, 809, 818
Bsc4I	CCNNNNNNNGG	4 cut(s)	501, 548, 601, 697
Bse118I	RCCGGY	1 cut(s)	690
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	7 cut(s)	12, 500, 663, 772, 798, 809, 818
BseGI	GGATG	2 cut(s)	214, 766
BseLI	CCNNNNNNNGG	4 cut(s)	501, 548, 601, 697
BseMII	CTCAG	6 cut(s)	160, 235, 303, 317, 428, 498
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	91, 100, 227
BseXI	GCAGC	2 cut(s)	418, 440
Bsh1236I	CGCG	2 cut(s)	792, 800
Bsh1285I	CGRYCG	1 cut(s)	695
BshFI	GGCC	3 cut(s)	662, 690, 814
BshNI	GGYRCC	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	695
BsiHKAI	GWGCWC	2 cut(s)	304, 415
BsiSI	CCGG	2 cut(s)	153, 691
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	4 cut(s)	501, 548, 601, 697
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	662, 690, 814
Bsp1286I	GDGCHC	3 cut(s)	243, 304, 415
Bsp143I	GATC	2 cut(s)	722, 782
Bsp1720I	GCTNAGC	2 cut(s)	303, 312
BspACI	CCGC	4 cut(s)	225, 798, 800, 815
BspANI	GGCC	3 cut(s)	662, 690, 814
BspCNI	CTCAG	6 cut(s)	159, 234, 304, 316, 427, 499
BspFNI	CGCG	2 cut(s)	792, 800
BspLI	GGNNCC	2 cut(s)	526, 538
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	7 cut(s)	12, 500, 663, 772, 798, 809, 818
BssMI	GATC	2 cut(s)	722, 782
BssNI	GRCGYC	2 cut(s)	161, 823
BssT1I	CCWWGG	4 cut(s)	500, 663, 809, 818
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	5 cut(s)	292, 299, 578, 686, 743
Bst6I	CTCTTC	3 cut(s)	95, 272, 574
BstACI	GRCGYC	2 cut(s)	161, 823
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	6 cut(s)	146, 221, 303, 312, 414, 507
BstDSI	CCRYGG	2 cut(s)	12, 798
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	214, 766
BstFNI	CGCG	2 cut(s)	792, 800
BstKTI	GATC	2 cut(s)	725, 785
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	722, 782
BstMCI	CGRYCG	1 cut(s)	695
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 313, 820
BstNI	CCWGG	1 cut(s)	773
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	771
BstUI	CGCG	2 cut(s)	792, 800
BstV1I	GCAGC	2 cut(s)	418, 440
BstX2I	RGATCY	2 cut(s)	722, 782
BstYI	RGATCY	2 cut(s)	722, 782
BsuRI	GGCC	3 cut(s)	662, 690, 814
BtgI	CCRYGG	2 cut(s)	12, 798
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	214, 766
BtsIMutI	CAGTG	4 cut(s)	288, 304, 691, 748
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	488
Cfr42I	CCGCGG	1 cut(s)	801
CseI	GACGC	3 cut(s)	150, 781, 812
CviAII	CATG	2 cut(s)	403, 600
DdeI	CTNAG	6 cut(s)	146, 221, 303, 312, 414, 507
DpnI	GATC	2 cut(s)	724, 784
DpnII	GATC	2 cut(s)	722, 782
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	3 cut(s)	95, 272, 574
EarI	CTCTTC	3 cut(s)	95, 272, 574
Eco130I	CCWWGG	4 cut(s)	500, 663, 809, 818
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	4 cut(s)	500, 663, 809, 818
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	4 cut(s)	500, 663, 809, 818
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	2 cut(s)	406, 603
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	2 cut(s)	402, 599
FauNDI	CATATG	1 cut(s)	718
Fnu4HI	GCNGC	5 cut(s)	226, 429, 432, 801, 815
FokI	GGATG	2 cut(s)	221, 773
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	226, 429, 432, 801, 815
FspBI	CTAG	2 cut(s)	53, 501
GluI	GCNGC	5 cut(s)	226, 429, 432, 801, 815
HaeIII	GGCC	3 cut(s)	662, 690, 814
HapII	CCGG	2 cut(s)	153, 691
HgaI	GACGC	3 cut(s)	150, 781, 812
Hin1I	GRCGYC	2 cut(s)	161, 823
Hin1II	CATG	2 cut(s)	406, 603
HincII	GTYRAC	3 cut(s)	295, 610, 769
HindII	GTYRAC	3 cut(s)	295, 610, 769
HinfI	GANTC	3 cut(s)	512, 566, 752
HpaII	CCGG	2 cut(s)	153, 691
HphI	GGTGA	3 cut(s)	31, 575, 787
Hpy166II	GTNNAC	4 cut(s)	295, 481, 610, 769
Hpy188I	TCNGA	2 cut(s)	196, 521
Hpy188III	TCNNGA	2 cut(s)	274, 416
Hpy8I	GTNNAC	4 cut(s)	295, 481, 610, 769
Hpy99I	CGWCG	4 cut(s)	166, 188, 233, 275
HpyAV	CCTTC	3 cut(s)	42, 115, 295
HpyCH4III	ACNGT	5 cut(s)	292, 299, 578, 686, 743
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 313, 820
HpyF3I	CTNAG	6 cut(s)	146, 221, 303, 312, 414, 507
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	2 cut(s)	161, 823
Hsp92II	CATG	2 cut(s)	406, 603
KspI	CCGCGG	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	722, 782
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	2 cut(s)	418, 440
MaeI	CTAG	2 cut(s)	53, 501
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	5 cut(s)	397, 563, 590, 712, 793
MalI	GATC	2 cut(s)	724, 784
MboI	GATC	2 cut(s)	722, 782
MboII	GAAGA	5 cut(s)	20, 82, 259, 561, 743
MflI	RGATCY	2 cut(s)	722, 782
MhlI	GDGCHC	3 cut(s)	243, 304, 415
MluCI	AATT	3 cut(s)	244, 613, 827
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	597
MseI	TTAA	2 cut(s)	261, 636
MspA1I	CMGCKG	4 cut(s)	225, 307, 431, 800
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	2 cut(s)	153, 691
MspR9I	CCNGG	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	773
MvnI	CGCG	2 cut(s)	792, 800
MwoI	GCNNNNNNNGC	3 cut(s)	308, 313, 820
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	2 cut(s)	722, 782
NlaIII	CATG	2 cut(s)	406, 603
NlaIV	GGNNCC	2 cut(s)	526, 538
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	4 cut(s)	397, 563, 712, 793
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	512, 752
PflFI	GACNNNGTC	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	227, 430, 433, 802, 816
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	771
PspEI	GGTNACC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	526, 538
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	722, 782
PsyI	GACNNNGTC	1 cut(s)	403
PvuII	CAGCTG	2 cut(s)	307, 431
SacII	CCGCGG	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	261, 636
SatI	GCNGC	5 cut(s)	226, 429, 432, 801, 815
Sau3AI	GATC	2 cut(s)	722, 782
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	3 cut(s)	243, 304, 415
Sfr303I	CCGCGG	1 cut(s)	801
SgrBI	CCGCGG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	244, 613, 827
SsiI	CCGC	4 cut(s)	225, 798, 800, 815
SspMI	CTAG	2 cut(s)	53, 501
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	4 cut(s)	500, 663, 809, 818
TaaI	ACNGT	5 cut(s)	292, 299, 578, 686, 743
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	5 cut(s)	128, 164, 201, 407, 695
TasI	AATT	3 cut(s)	244, 613, 827
TauI	GCSGC	3 cut(s)	228, 803, 817
TfiI	GAWTC	2 cut(s)	512, 752
Tru1I	TTAA	2 cut(s)	261, 636
Tru9I	TTAA	2 cut(s)	261, 636
TscAI	CASTG	4 cut(s)	295, 304, 691, 748
TseFI	GTSAC	4 cut(s)	397, 563, 712, 793
TseI	GCWGC	2 cut(s)	428, 431
Tsp45I	GTSAC	4 cut(s)	397, 563, 712, 793
TspDTI	ATGAA	3 cut(s)	129, 468, 752
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	4 cut(s)	295, 304, 691, 748
Tth111I	GACNNNGTC	1 cut(s)	403
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmaJI	CCTAGG	1 cut(s)	500
XspI	CTAG	2 cut(s)	53, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.